4GK0A

Crystal structure of human rev3-rev7-rev1 complex
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
201
structure length
198
Chain Sequence
LNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPISSDSLLSHVEQLLAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Mitotic spindle assembly checkpoint protein MAD2B
publication title Structural insights into the assembly of human translesion polymerase complexes
pubmed doi rcsb
source organism Homo sapiens
total genus 53
structure length 198
sequence length 201
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02301 HORMA HORMA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.900.10 Alpha Beta 2-Layer Sandwich Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A HORMA domain 4gk0A00
3VU7C 4TZMA 1S2HA 4TZOA 4GK0A 1GO4A 4YK8B 4GK5A 4J2GA 4EXTC 2V64D 4TZSA 3ABEC 1KLQA 1DUJA 2QYFA 2V64A 4AEZB 3GMHA 4TZJA 3ABDA 2VFXA 4TZQA 4TRKA 5LCWZ 5C50B 4TZLA 4TZNA 4FJOC
chains in the Genus database with same CATH superfamily
3VU7C 4TZMA 1S2HA 4TZOA 4GK0A 1GO4A 4YK8B 4GK5A 4J2GA 4EXTC 2V64D 4TZSA 3ABEC 1KLQA 1DUJA 2QYFA 2V64A 4AEZB 3GMHA 4TZJA 3ABDA 2VFXA 4TZQA 4TRKA 5LCWZ 2QYFB 5C50B 4TZLA 4TZNA 4FJOC
chains in the Genus database with same CATH topology
3VU7C 4TZMA 1S2HA 4TZOA 4GK0A 1GO4A 4YK8B 4GK5A 4J2GA 4EXTC 2V64D 4TZSA 3ABEC 1KLQA 1DUJA 2QYFA 2V64A 4AEZB 3GMHA 4TZJA 3ABDA 2VFXA 4TZQA 4TRKA 5LCWZ 5C50B 4TZLA 4TZNA 4FJOC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VU7 C;  4TZM A;  1S2H A;  4TZO A;  4GK0 A;  1GO4 A;  4YK8 B;  4GK5 A;  4J2G A;  4EXT C;  2V64 D;  4TZS A;  3ABE C;  1KLQ A;  1DUJ A;  2QYF A;  2V64 A;  4AEZ B;  3GMH A;  4TZJ A;  3ABD A;  2VFX A;  4TZQ A;  4TRK A;  5LCW Z;  5C50 B;  4TZL A;  4TZN A;  4FJO C; 
#chains in the Genus database with same CATH topology
 3VU7 C;  4TZM A;  1S2H A;  4TZO A;  4GK0 A;  1GO4 A;  4YK8 B;  4GK5 A;  4J2G A;  4EXT C;  2V64 D;  4TZS A;  3ABE C;  1KLQ A;  1DUJ A;  2QYF A;  2V64 A;  4AEZ B;  3GMH A;  4TZJ A;  3ABD A;  2VFX A;  4TZQ A;  4TRK A;  5LCW Z;  2QYF B;  5C50 B;  4TZL A;  4TZN A;  4FJO C; 
#chains in the Genus database with same CATH homology
 3VU7 C;  4TZM A;  1S2H A;  4TZO A;  4GK0 A;  1GO4 A;  4YK8 B;  4GK5 A;  4J2G A;  4EXT C;  2V64 D;  4TZS A;  3ABE C;  1KLQ A;  1DUJ A;  2QYF A;  2V64 A;  4AEZ B;  3GMH A;  4TZJ A;  3ABD A;  2VFX A;  4TZQ A;  4TRK A;  5LCW Z;  5C50 B;  4TZL A;  4TZN A;  4FJO C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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