4GOHA

Structure of the substrate-free hmuo, ho from corynebacterium diphtheriae
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
210
structure length
210
Chain Sequence
AGLAVELKQSTAQAHEKAEHSTFMSDLLKGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSRITASPAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLELSDEQREHLLKEATDAFVFNHQVFADLGKGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase
publication title Crystal Structure of the Substrate-Free and the Product-Bound forms of HmuO, a Heme Oxygenase from Corynebacterium diphtheriae
rcsb
source organism Corynebacterium diphtheriae
total genus 87
structure length 210
sequence length 210
ec nomenclature ec 1.14.99.3: Transferred entry: 1.14.14.18.
pdb deposition date 2012-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 4gohA00
4G8UA 3TGMA 1ULXA 4G8WA 1OZEA 1P3VA 1J2CA 1OYLA 4WWJA 1P3TA 1OZWA 4MECA 2DY5A 4GPCA 3CZYA 1RTWA 3MVUA 1WZGA 3B5PA 1WE1A 1VGIA 1WNXA 3B5OA 1WZDA 1J77A 1IW1A 2A6BA 3OQLA 1OTWA 1TO9B 1XK3A 2ZVUA 4G7UA 4RAJA 1TYHA 2RGZA 1OZLA 4G98A 1J02A 1OTVA 5BTQA 1IX3A 4G99A 2F2GA 1S8CA 4NY7A 3HNHA 2QPPA 3IBXA 2A2OA 4WMHA 4GPHA 1TO9A 1DVEA 1UBBA 4WWZA 1T5PA 1OYKA 3HLXA 1YAFA 1IW0A 3HOKA 1RCWA 1WZFA 1WOWA 3MOOA 1SK7A 1Z72A 3NO6A 4LQXA 1XK2A 2RD3A 2QZCA 1V8XA 2Q4XA 1P3UA 2GM7A 4GOHA 1YAKA 1TWNA 1OZRA 1WWMA 1UDDA 3HMLA 2E7EA 2A2MA 2Q32A 4G7PA 1IRMA 1TWRA 4GPFA 1IX4A 3I8RA 4WD4A 4WX0A 4G7LA 1DVGA 4G8PA 1NI6A 3DDEA 1IVJA 1S13A 1WNWA 1XJZA 2Z68A 2QCXA 1XK0A 1WNVA 1XK1A 3I9TA 3BJDA 3I9UA 3RM5A 2GM8A 1N3UA 4FN6A 1N45A 1WOVA 3K4FA 1WOXA 4G7TA
chains in the Genus database with same CATH superfamily
4G8UA 3TGMA 1ULXA 4G8WA 1OZEA 1P3VA 1J2CA 1OYLA 4WWJA 1P3TA 1OZWA 4MECA 2DY5A 4GPCA 3CZYA 1RTWA 3MVUA 1WZGA 3B5PA 1WE1A 1VGIA 1WNXA 3B5OA 1WZDA 1J77A 1IW1A 2A6BA 3OQLA 1OTWA 1TO9B 1XK3A 2ZVUA 4G7UA 4RAJA 1TYHA 2RGZA 1OZLA 4G98A 1J02A 1OTVA 5BTQA 1IX3A 4G99A 2F2GA 1S8CA 4NY7A 3HNHA 2QPPA 3IBXA 2A2OA 4WMHA 4GPHA 1TO9A 1DVEA 1UBBA 4WWZA 1T5PA 1OYKA 3HLXA 1YAFA 1IW0A 3HOKA 1RCWA 1WZFA 1WOWA 3MOOA 1SK7A 1Z72A 3NO6A 4LQXA 1XK2A 2RD3A 2QZCA 1V8XA 2Q4XA 1P3UA 2GM7A 4GOHA 1YAKA 1TWNA 1OZRA 1WWMA 1UDDA 3HMLA 2E7EA 2A2MA 2Q32A 4G7PA 1IRMA 1TWRA 4GPFA 1IX4A 3I8RA 4WD4A 4WX0A 4G7LA 1DVGA 4G8PA 1NI6A 2LCUA 3DDEA 1IVJA 1S13A 1WNWA 1XJZA 2Z68A 2QCXA 1XK0A 1WNVA 1XK1A 3I9TA 3BJDA 3I9UA 3RM5A 2GM8A 1N3UA 4FN6A 1N45A 1WOVA 3K4FA 1WOXA 4G7TA
chains in the Genus database with same CATH topology
4G8UA 3TGMA 1ULXA 4G8WA 1OZEA 1P3VA 1J2CA 1OYLA 4WWJA 1P3TA 1OZWA 4MECA 2DY5A 4GPCA 3CZYA 1RTWA 3MVUA 1WZGA 3B5PA 1WE1A 1VGIA 1WNXA 3B5OA 1WZDA 1J77A 1IW1A 2A6BA 3OQLA 1OTWA 1TO9B 1XK3A 2ZVUA 4G7UA 4RAJA 1TYHA 2RGZA 1OZLA 4G98A 1J02A 1OTVA 5BTQA 1IX3A 4G99A 2F2GA 1S8CA 4NY7A 3HNHA 2QPPA 3IBXA 2A2OA 4WMHA 4GPHA 1TO9A 1DVEA 1UBBA 4WWZA 1T5PA 1OYKA 3HLXA 1YAFA 1IW0A 3HOKA 1RCWA 1WZFA 1WOWA 3MOOA 1SK7A 1Z72A 3NO6A 4LQXA 1XK2A 2RD3A 2QZCA 1V8XA 2Q4XA 1P3UA 2GM7A 4GOHA 1YAKA 1TWNA 1OZRA 1WWMA 1UDDA 3HMLA 2E7EA 2A2MA 2Q32A 4G7PA 1IRMA 1TWRA 4GPFA 1IX4A 3I8RA 4WD4A 4WX0A 4G7LA 1DVGA 4G8PA 1NI6A 3DDEA 1IVJA 1S13A 1WNWA 1XJZA 2Z68A 2QCXA 1XK0A 1WNVA 1XK1A 3I9TA 3BJDA 3I9UA 3RM5A 2GM8A 1N3UA 4FN6A 1N45A 1WOVA 3K4FA 1WOXA 4G7TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G8U A;  3TGM A;  1ULX A;  4G8W A;  1OZE A;  1P3V A;  1J2C A;  1OYL A;  4WWJ A;  1P3T A;  1OZW A;  4MEC A;  2DY5 A;  4GPC A;  3CZY A;  1RTW A;  3MVU A;  1WZG A;  3B5P A;  1WE1 A;  1VGI A;  1WNX A;  3B5O A;  1WZD A;  1J77 A;  1IW1 A;  2A6B A;  3OQL A;  1OTW A;  1TO9 B;  1XK3 A;  2ZVU A;  4G7U A;  4RAJ A;  1TYH A;  2RGZ A;  1OZL A;  4G98 A;  1J02 A;  1OTV A;  5BTQ A;  1IX3 A;  4G99 A;  2F2G A;  1S8C A;  4NY7 A;  3HNH A;  2QPP A;  3IBX A;  2A2O A;  4WMH A;  4GPH A;  1TO9 A;  1DVE A;  1UBB A;  4WWZ A;  1T5P A;  1OYK A;  3HLX A;  1YAF A;  1IW0 A;  3HOK A;  1RCW A;  1WZF A;  1WOW A;  3MOO A;  1SK7 A;  1Z72 A;  3NO6 A;  4LQX A;  1XK2 A;  2RD3 A;  2QZC A;  1V8X A;  2Q4X A;  1P3U A;  2GM7 A;  4GOH A;  1YAK A;  1TWN A;  1OZR A;  1WWM A;  1UDD A;  3HML A;  2E7E A;  2A2M A;  2Q32 A;  4G7P A;  1IRM A;  1TWR A;  4GPF A;  1IX4 A;  3I8R A;  4WD4 A;  4WX0 A;  4G7L A;  1DVG A;  4G8P A;  1NI6 A;  3DDE A;  1IVJ A;  1S13 A;  1WNW A;  1XJZ A;  2Z68 A;  2QCX A;  1XK0 A;  1WNV A;  1XK1 A;  3I9T A;  3BJD A;  3I9U A;  3RM5 A;  2GM8 A;  1N3U A;  4FN6 A;  1N45 A;  1WOV A;  3K4F A;  1WOX A;  4G7T A; 
#chains in the Genus database with same CATH topology
 4G8U A;  3TGM A;  1ULX A;  4G8W A;  1OZE A;  1P3V A;  1J2C A;  1OYL A;  4WWJ A;  1P3T A;  1OZW A;  4MEC A;  2DY5 A;  4GPC A;  3CZY A;  1RTW A;  3MVU A;  1WZG A;  3B5P A;  1WE1 A;  1VGI A;  1WNX A;  3B5O A;  1WZD A;  1J77 A;  1IW1 A;  2A6B A;  3OQL A;  1OTW A;  1TO9 B;  1XK3 A;  2ZVU A;  4G7U A;  4RAJ A;  1TYH A;  2RGZ A;  1OZL A;  4G98 A;  1J02 A;  1OTV A;  5BTQ A;  1IX3 A;  4G99 A;  2F2G A;  1S8C A;  4NY7 A;  3HNH A;  2QPP A;  3IBX A;  2A2O A;  4WMH A;  4GPH A;  1TO9 A;  1DVE A;  1UBB A;  4WWZ A;  1T5P A;  1OYK A;  3HLX A;  1YAF A;  1IW0 A;  3HOK A;  1RCW A;  1WZF A;  1WOW A;  3MOO A;  1SK7 A;  1Z72 A;  3NO6 A;  4LQX A;  1XK2 A;  2RD3 A;  2QZC A;  1V8X A;  2Q4X A;  1P3U A;  2GM7 A;  4GOH A;  1YAK A;  1TWN A;  1OZR A;  1WWM A;  1UDD A;  3HML A;  2E7E A;  2A2M A;  2Q32 A;  4G7P A;  1IRM A;  1TWR A;  4GPF A;  1IX4 A;  3I8R A;  4WD4 A;  4WX0 A;  4G7L A;  1DVG A;  4G8P A;  1NI6 A;  2LCU A;  3DDE A;  1IVJ A;  1S13 A;  1WNW A;  1XJZ A;  2Z68 A;  2QCX A;  1XK0 A;  1WNV A;  1XK1 A;  3I9T A;  3BJD A;  3I9U A;  3RM5 A;  2GM8 A;  1N3U A;  4FN6 A;  1N45 A;  1WOV A;  3K4F A;  1WOX A;  4G7T A; 
#chains in the Genus database with same CATH homology
 4G8U A;  3TGM A;  1ULX A;  4G8W A;  1OZE A;  1P3V A;  1J2C A;  1OYL A;  4WWJ A;  1P3T A;  1OZW A;  4MEC A;  2DY5 A;  4GPC A;  3CZY A;  1RTW A;  3MVU A;  1WZG A;  3B5P A;  1WE1 A;  1VGI A;  1WNX A;  3B5O A;  1WZD A;  1J77 A;  1IW1 A;  2A6B A;  3OQL A;  1OTW A;  1TO9 B;  1XK3 A;  2ZVU A;  4G7U A;  4RAJ A;  1TYH A;  2RGZ A;  1OZL A;  4G98 A;  1J02 A;  1OTV A;  5BTQ A;  1IX3 A;  4G99 A;  2F2G A;  1S8C A;  4NY7 A;  3HNH A;  2QPP A;  3IBX A;  2A2O A;  4WMH A;  4GPH A;  1TO9 A;  1DVE A;  1UBB A;  4WWZ A;  1T5P A;  1OYK A;  3HLX A;  1YAF A;  1IW0 A;  3HOK A;  1RCW A;  1WZF A;  1WOW A;  3MOO A;  1SK7 A;  1Z72 A;  3NO6 A;  4LQX A;  1XK2 A;  2RD3 A;  2QZC A;  1V8X A;  2Q4X A;  1P3U A;  2GM7 A;  4GOH A;  1YAK A;  1TWN A;  1OZR A;  1WWM A;  1UDD A;  3HML A;  2E7E A;  2A2M A;  2Q32 A;  4G7P A;  1IRM A;  1TWR A;  4GPF A;  1IX4 A;  3I8R A;  4WD4 A;  4WX0 A;  4G7L A;  1DVG A;  4G8P A;  1NI6 A;  3DDE A;  1IVJ A;  1S13 A;  1WNW A;  1XJZ A;  2Z68 A;  2QCX A;  1XK0 A;  1WNV A;  1XK1 A;  3I9T A;  3BJD A;  3I9U A;  3RM5 A;  2GM8 A;  1N3U A;  4FN6 A;  1N45 A;  1WOV A;  3K4F A;  1WOX A;  4G7T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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