4GOJC

The crystal structure of full length arl3gppnhp in complex with unc119a
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
179
structure length
161
Chain Sequence
PIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords ADP-ribosylation factor-like protein 3
publication title Structural basis for Arl3-specific release of myristoylated ciliary cargo from UNC119.
pubmed doi rcsb
source organism Mus musculus
total genus 38
structure length 161
sequence length 179
chains with identical sequence D
ec nomenclature
pdb deposition date 2012-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF05351 GMP_PDE_delta GMP-PDE, delta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.40 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 GMP phosphodiesterase, delta subunit 4gojC00
4JVBB 4GOJC 5L7KA 1KSHB 4JHPB 5TB5B 3RBQA 4JV6B 5F2UA 4JV8B 3GQQA 3T5GB 1KSGB 3T5IA 1KSJB 4JVFB 5E80A 5TARB 4GOKC 5E8FA
chains in the Genus database with same CATH superfamily
2JI0A 1AJWA 4JVBB 1DOAB 1KSHB 1FT0A 4A02A 4F38B 1DS6B 2JHWA 5HNPA 3GQQA 2VTCA 5ACJA 1FSOA 3T5IA 1FT3A 2LHSA 4OY7A 5E80A 4QI8A 5DQEA 4D7VA 5FOHA 2XWXA 4GOJC 5HGUA 5L7KA 3UAMA 2YETA 2JHYA 3KYSA 2JHXA 3EIIA 5TB5B 4ALCA 5F2UA 3EJAA 1GDFA 4JV8B 2YOWA 2JHZA 1HH4D 4EISA 3T5GB 1KSGB 2JHUA 1FSTA 4OY8A 5ACHA 4B5QA 4EIRA 5E8FA 5DQ8A 4RE1A 4ALEA 5ACGA 1QVYA 5IJUA 4LN0A 4JHPB 3ZUDA 3RBQA 2BXWA 2BENA 5FTZA 2YOYA 2JHTA 2R5OA 1RHOA 4MAHA 5EMVA 5HNOA 3JUAA 4ALRA 4ALSA 3L15A 4EISB 4ALTA 2BEMA 4OY6A 4D7UA 1KMTA 4GBOA 5ACIA 2YOXA 4JV6B 5FJQA 5EMWA 2JHVA 4MAIA 4FMRA 1KSJB 4ALQA 5AA7A 4JVFB 5TARB 4GOKC 5ACFA 2JHSA
chains in the Genus database with same CATH topology
4JVBB 4GOJC 5L7KA 1KSHB 4JHPB 5TB5B 3RBQA 4JV6B 5F2UA 4JV8B 3GQQA 3T5GB 1KSGB 3T5IA 1KSJB 4JVFB 5E80A 5TARB 4GOKC 5E8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JVB B;  4GOJ C;  5L7K A;  1KSH B;  4JHP B;  5TB5 B;  3RBQ A;  4JV6 B;  5F2U A;  4JV8 B;  3GQQ A;  3T5G B;  1KSG B;  3T5I A;  1KSJ B;  4JVF B;  5E80 A;  5TAR B;  4GOK C;  5E8F A; 
#chains in the Genus database with same CATH topology
 2JI0 A;  1AJW A;  4JVB B;  1DOA B;  1KSH B;  1FT0 A;  4A02 A;  4F38 B;  1DS6 B;  2JHW A;  5HNP A;  3GQQ A;  2VTC A;  5ACJ A;  1FSO A;  3T5I A;  1FT3 A;  2LHS A;  4OY7 A;  5E80 A;  4QI8 A;  5DQE A;  4D7V A;  5FOH A;  2XWX A;  4GOJ C;  5HGU A;  5L7K A;  3UAM A;  2YET A;  2JHY A;  3KYS A;  2JHX A;  3EII A;  5TB5 B;  4ALC A;  5F2U A;  3EJA A;  1GDF A;  4JV8 B;  2YOW A;  2JHZ A;  1HH4 D;  4EIS A;  3T5G B;  1KSG B;  2JHU A;  1FST A;  4OY8 A;  5ACH A;  4B5Q A;  4EIR A;  5E8F A;  5DQ8 A;  4RE1 A;  4ALE A;  5ACG A;  1QVY A;  5IJU A;  4LN0 A;  4JHP B;  3ZUD A;  3RBQ A;  2BXW A;  2BEN A;  5FTZ A;  2YOY A;  2JHT A;  2R5O A;  1RHO A;  4MAH A;  5EMV A;  5HNO A;  3JUA A;  4ALR A;  4ALS A;  3L15 A;  4EIS B;  4ALT A;  2BEM A;  4OY6 A;  4D7U A;  1KMT A;  4GBO A;  5ACI A;  2YOX A;  4JV6 B;  5FJQ A;  5EMW A;  2JHV A;  4MAI A;  4FMR A;  1KSJ B;  4ALQ A;  5AA7 A;  4JVF B;  5TAR B;  4GOK C;  5ACF A;  2JHS A; 
#chains in the Genus database with same CATH homology
 4JVB B;  4GOJ C;  5L7K A;  1KSH B;  4JHP B;  5TB5 B;  3RBQ A;  4JV6 B;  5F2U A;  4JV8 B;  3GQQ A;  3T5G B;  1KSG B;  3T5I A;  1KSJ B;  4JVF B;  5E80 A;  5TAR B;  4GOK C;  5E8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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