4GV5A

X-ray structure of crotamine, a cell-penetrating peptide from the brazilian snake crotalus durissus terrificus
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
42
structure length
42
Chain Sequence
YKQCHKKGGHCFPKEKICLPPSSDFGKMDCRWRWKCCKKGSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Crotamine Ile-19
publication title Structure of the polypeptide crotamine from the Brazilian rattlesnake Crotalus durissus terrificus.
pubmed doi rcsb
total genus 10
structure length 42
sequence length 42
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2012-08-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.20.10 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 4gv5A00
1ZLIB 2JTOA 1B8WA 1ZUEA 2MUBA 1ATXA 1SH1A 3D4UB 1SHIA 2K2XA 1APFA 4GV5A 2H9XA 1WXNA 1AHLA 1ZUFA 1WQKA 2RNGA 1ZLHB 2SH1A 1D6BA 3LMSB 1H5OA 2BDSA 1Z99A 2MN3A 1BDSA
chains in the Genus database with same CATH superfamily
1EL6A 2HJ9C 3MYVA 3KEZA 4YIRA 1ZLIB 2HJEA 1GL9B 2JTOA 2JR3A 1B8WA 1ZUEA 2B9KA 1ZHHB 2MUBA 1ATXA 1SH1A 2QSGA 2IKEA 3D4UB 1SHIA 2QSHA 2K2XA 3IF4A 1APFA 1GKUB 4GV5A 2XXLA 2H9XA 1WXNA 3MCXA 1AHLA 1ZUFA 1WQKA 2DLAA 2QSFA 2RNGA 1ZLHB 3C30A 2SH1A 2IKDA 1D6BA 3C38A 3LMSB 1H5OA 2BDSA 1Z99A 2MN3A 1BDSA
chains in the Genus database with same CATH topology
2HJ9C 3MYVA 3KEZA 4YIRA 1ZLIB 2HJEA 2JTOA 2JR3A 1B8WA 1ZUEA 2B9KA 1ZHHB 2MUBA 1ATXA 1SH1A 2QSGA 2IKEA 3D4UB 1SHIA 2QSHA 2K2XA 1APFA 4GV5A 2XXLA 2H9XA 1WXNA 3MCXA 1AHLA 1ZUFA 1WQKA 2DLAA 2QSFA 2RNGA 1ZLHB 3C30A 2SH1A 2IKDA 1D6BA 3C38A 3LMSB 1H5OA 2BDSA 1Z99A 2MN3A 1BDSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZLI B;  2JTO A;  1B8W A;  1ZUE A;  2MUB A;  1ATX A;  1SH1 A;  3D4U B;  1SHI A;  2K2X A;  1APF A;  4GV5 A;  2H9X A;  1WXN A;  1AHL A;  1ZUF A;  1WQK A;  2RNG A;  1ZLH B;  2SH1 A;  1D6B A;  3LMS B;  1H5O A;  2BDS A;  1Z99 A;  2MN3 A;  1BDS A; 
#chains in the Genus database with same CATH topology
 1EL6 A;  2HJ9 C;  3MYV A;  3KEZ A;  4YIR A;  1ZLI B;  2HJE A;  1GL9 B;  2JTO A;  2JR3 A;  1B8W A;  1ZUE A;  2B9K A;  1ZHH B;  2MUB A;  1ATX A;  1SH1 A;  2QSG A;  2IKE A;  3D4U B;  1SHI A;  2QSH A;  2K2X A;  3IF4 A;  1APF A;  1GKU B;  4GV5 A;  2XXL A;  2H9X A;  1WXN A;  3MCX A;  1AHL A;  1ZUF A;  1WQK A;  2DLA A;  2QSF A;  2RNG A;  1ZLH B;  3C30 A;  2SH1 A;  2IKD A;  1D6B A;  3C38 A;  3LMS B;  1H5O A;  2BDS A;  1Z99 A;  2MN3 A;  1BDS A; 
#chains in the Genus database with same CATH homology
 2HJ9 C;  3MYV A;  3KEZ A;  4YIR A;  1ZLI B;  2HJE A;  2JTO A;  2JR3 A;  1B8W A;  1ZUE A;  2B9K A;  1ZHH B;  2MUB A;  1ATX A;  1SH1 A;  2QSG A;  2IKE A;  3D4U B;  1SHI A;  2QSH A;  2K2X A;  1APF A;  4GV5 A;  2XXL A;  2H9X A;  1WXN A;  3MCX A;  1AHL A;  1ZUF A;  1WQK A;  2DLA A;  2QSF A;  2RNG A;  1ZLH B;  3C30 A;  2SH1 A;  2IKD A;  1D6B A;  3C38 A;  3LMS B;  1H5O A;  2BDS A;  1Z99 A;  2MN3 A;  1BDS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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