4GVVA

Crystal structure of de novo design serine hydrolase osh55.27, northeast structural genomics consortium (nesg) target or246
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
165
structure length
165
Chain Sequence
ARIRDVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVFRVMFEEIKKAPDTLEVTGVHGTEKSAEAGRRATLEHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords De novo design serine hydrolase
publication title Northeast Structural Genomics Consortium Target OR246
rcsb
molecule tags De novo protein
total genus 55
structure length 165
sequence length 165
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-08-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 4gvvA00
1LANA 3KR5A 3SIGA 1NJRA 1TXZA 4UMLA 5FSZA 5E3BA 4GUAA 3JZTA 4ESSA 2BFQA 4R76A 3KZWA 4ETJA 4X2TA 3V45A 4ABKA 3PEIA 3V2BA 4J5RA 3EWQA 1LAPA 1LAMA 3KQZA 3EJFA 3T8WA 1BLLE 2BFRA 2XD7A 5CB5A 4ZY0A 4J5QA 5CMSA 4ZI6A 1BPMA 3Q71A 3GPQA 3H8EA 4ZY1A 1YD9A 1BPNA 3KR4A 5FSUA 4GVWA 3JRUA 3SIJA 2AFCA 3SIIA 2X47A 3H8GA 3EW5A 4ZX8A 3SIHA 4D86A 3EKEA 1ZR3A 2J9AA 2FAVA 5HIHA 3GPGA 4IQYA 5AILA 3GPOA 2FXKA 3GQEA 5FSYA 4JVVA 3EWOA 4JGKA 4KSIA 3ETIA 4KYBA 3H8FA 4ZX9A 2VRIA 3EWRA 4GVVA 5DUSA 5FSXA 3EJGA 3IIFA 5FSVA 4J4ZA 4K3NA 1ZR5A 4K0CA 1HJZA 5CB3A 4ETKA 4JCAA 4R7MA 2L8RA 3GQOA 4JLLA 3VFQA 1LCPA 4TU0A 4ZY2A 2LGRA 1GYTA 3IIDA 5HOLA 1TY8A 4ZYQA 5CBMA 1SPVA 2DX6A 3EWPA 4J5SA 4ABLA 2EEEA 2EWBA 3KQXA 2ACFA 2FG1A 5D8NA 4R6TA 1VHUA 3Q6ZA 3IJ3A
chains in the Genus database with same CATH superfamily
1LANA 3KR5A 3SIGA 1NJRA 1TXZA 4UMLA 5FSZA 5E3BA 4GUAA 3JZTA 4ESSA 2BFQA 4R76A 3KZWA 4ETJA 4X2TA 3V45A 4ABKA 3PEIA 3V2BA 4J5RA 3EWQA 1LAPA 1LAMA 3KQZA 3EJFA 3T8WA 2W2GA 1BLLE 2BFRA 2XD7A 5CB5A 4ZY0A 4J5QA 5CMSA 4ZI6A 1BPMA 3Q71A 3GPQA 3H8EA 4ZY1A 1YD9A 1BPNA 3KR4A 5FSUA 4GVWA 3JRUA 3SIJA 2AFCA 3SIIA 2X47A 3H8GA 3EW5A 4ZX8A 3SIHA 4D86A 3EKEA 1ZR3A 2J9AA 2FAVA 5HIHA 3GPGA 4IQYA 5AILA 3GPOA 2FXKA 3GQEA 5FSYA 4JVVA 3EWOA 4JGKA 4KSIA 3ETIA 4KYBA 3H8FA 4ZX9A 2VRIA 3EWRA 4GVVA 5DUSA 5FSXA 2JZFA 3EJGA 3IIFA 5FSVA 4J4ZA 4K3NA 1ZR5A 4K0CA 1HJZA 5CB3A 4ETKA 4JCAA 4R7MA 2L8RA 3GQOA 4JLLA 3VFQA 2WCTA 1LCPA 2JZDA 4TU0A 4ZY2A 2LGRA 1GYTA 3IIDA 5HOLA 1TY8A 4ZYQA 5CBMA 1SPVA 2DX6A 2KQVA 3EWPA 4J5SA 4ABLA 2EEEA 2EWBA 3KQXA 2ACFA 2FG1A 5D8NA 4R6TA 2JZEA 2RNKA 1VHUA 3Q6ZA 3IJ3A
chains in the Genus database with same CATH topology
1LANA 3KR5A 3SIGA 1NJRA 1TXZA 4UMLA 5FSZA 5E3BA 4GUAA 3JZTA 4ESSA 2BFQA 4R76A 3KZWA 4ETJA 4X2TA 3V45A 4ABKA 3PEIA 3V2BA 4J5RA 3EWQA 1LAPA 1LAMA 3KQZA 3EJFA 3T8WA 1BLLE 2BFRA 2XD7A 5CB5A 4ZY0A 4J5QA 5CMSA 4ZI6A 1BPMA 3Q71A 3GPQA 3H8EA 4ZY1A 1YD9A 1BPNA 3KR4A 5FSUA 4GVWA 3JRUA 3SIJA 2AFCA 3SIIA 2X47A 3H8GA 3EW5A 4ZX8A 3SIHA 4D86A 3EKEA 1ZR3A 2J9AA 2FAVA 5HIHA 3GPGA 4IQYA 5AILA 3GPOA 2FXKA 3GQEA 5FSYA 4JVVA 3EWOA 4JGKA 4KSIA 3ETIA 4KYBA 3H8FA 4ZX9A 2VRIA 3EWRA 4GVVA 5DUSA 5FSXA 3EJGA 3IIFA 5FSVA 4J4ZA 4K3NA 1ZR5A 4K0CA 1HJZA 5CB3A 4ETKA 4JCAA 4R7MA 2L8RA 3GQOA 4JLLA 3VFQA 1LCPA 4TU0A 4ZY2A 2LGRA 1GYTA 3IIDA 5HOLA 1TY8A 4ZYQA 5CBMA 1SPVA 2DX6A 3EWPA 4J5SA 4ABLA 2EEEA 2EWBA 3KQXA 2ACFA 2FG1A 5D8NA 4R6TA 1VHUA 3Q6ZA 3IJ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LAN A;  3KR5 A;  3SIG A;  1NJR A;  1TXZ A;  4UML A;  5FSZ A;  5E3B A;  4GUA A;  3JZT A;  4ESS A;  2BFQ A;  4R76 A;  3KZW A;  4ETJ A;  4X2T A;  3V45 A;  4ABK A;  3PEI A;  3V2B A;  4J5R A;  3EWQ A;  1LAP A;  1LAM A;  3KQZ A;  3EJF A;  3T8W A;  1BLL E;  2BFR A;  2XD7 A;  5CB5 A;  4ZY0 A;  4J5Q A;  5CMS A;  4ZI6 A;  1BPM A;  3Q71 A;  3GPQ A;  3H8E A;  4ZY1 A;  1YD9 A;  1BPN A;  3KR4 A;  5FSU A;  4GVW A;  3JRU A;  3SIJ A;  2AFC A;  3SII A;  2X47 A;  3H8G A;  3EW5 A;  4ZX8 A;  3SIH A;  4D86 A;  3EKE A;  1ZR3 A;  2J9A A;  2FAV A;  5HIH A;  3GPG A;  4IQY A;  5AIL A;  3GPO A;  2FXK A;  3GQE A;  5FSY A;  4JVV A;  3EWO A;  4JGK A;  4KSI A;  3ETI A;  4KYB A;  3H8F A;  4ZX9 A;  2VRI A;  3EWR A;  4GVV A;  5DUS A;  5FSX A;  3EJG A;  3IIF A;  5FSV A;  4J4Z A;  4K3N A;  1ZR5 A;  4K0C A;  1HJZ A;  5CB3 A;  4ETK A;  4JCA A;  4R7M A;  2L8R A;  3GQO A;  4JLL A;  3VFQ A;  1LCP A;  4TU0 A;  4ZY2 A;  2LGR A;  1GYT A;  3IID A;  5HOL A;  1TY8 A;  4ZYQ A;  5CBM A;  1SPV A;  2DX6 A;  3EWP A;  4J5S A;  4ABL A;  2EEE A;  2EWB A;  3KQX A;  2ACF A;  2FG1 A;  5D8N A;  4R6T A;  1VHU A;  3Q6Z A;  3IJ3 A; 
#chains in the Genus database with same CATH topology
 1LAN A;  3KR5 A;  3SIG A;  1NJR A;  1TXZ A;  4UML A;  5FSZ A;  5E3B A;  4GUA A;  3JZT A;  4ESS A;  2BFQ A;  4R76 A;  3KZW A;  4ETJ A;  4X2T A;  3V45 A;  4ABK A;  3PEI A;  3V2B A;  4J5R A;  3EWQ A;  1LAP A;  1LAM A;  3KQZ A;  3EJF A;  3T8W A;  2W2G A;  1BLL E;  2BFR A;  2XD7 A;  5CB5 A;  4ZY0 A;  4J5Q A;  5CMS A;  4ZI6 A;  1BPM A;  3Q71 A;  3GPQ A;  3H8E A;  4ZY1 A;  1YD9 A;  1BPN A;  3KR4 A;  5FSU A;  4GVW A;  3JRU A;  3SIJ A;  2AFC A;  3SII A;  2X47 A;  3H8G A;  3EW5 A;  4ZX8 A;  3SIH A;  4D86 A;  3EKE A;  1ZR3 A;  2J9A A;  2FAV A;  5HIH A;  3GPG A;  4IQY A;  5AIL A;  3GPO A;  2FXK A;  3GQE A;  5FSY A;  4JVV A;  3EWO A;  4JGK A;  4KSI A;  3ETI A;  4KYB A;  3H8F A;  4ZX9 A;  2VRI A;  3EWR A;  4GVV A;  5DUS A;  5FSX A;  2JZF A;  3EJG A;  3IIF A;  5FSV A;  4J4Z A;  4K3N A;  1ZR5 A;  4K0C A;  1HJZ A;  5CB3 A;  4ETK A;  4JCA A;  4R7M A;  2L8R A;  3GQO A;  4JLL A;  3VFQ A;  2WCT A;  1LCP A;  2JZD A;  4TU0 A;  4ZY2 A;  2LGR A;  1GYT A;  3IID A;  5HOL A;  1TY8 A;  4ZYQ A;  5CBM A;  1SPV A;  2DX6 A;  2KQV A;  3EWP A;  4J5S A;  4ABL A;  2EEE A;  2EWB A;  3KQX A;  2ACF A;  2FG1 A;  5D8N A;  4R6T A;  2JZE A;  2RNK A;  1VHU A;  3Q6Z A;  3IJ3 A; 
#chains in the Genus database with same CATH homology
 1LAN A;  3KR5 A;  3SIG A;  1NJR A;  1TXZ A;  4UML A;  5FSZ A;  5E3B A;  4GUA A;  3JZT A;  4ESS A;  2BFQ A;  4R76 A;  3KZW A;  4ETJ A;  4X2T A;  3V45 A;  4ABK A;  3PEI A;  3V2B A;  4J5R A;  3EWQ A;  1LAP A;  1LAM A;  3KQZ A;  3EJF A;  3T8W A;  1BLL E;  2BFR A;  2XD7 A;  5CB5 A;  4ZY0 A;  4J5Q A;  5CMS A;  4ZI6 A;  1BPM A;  3Q71 A;  3GPQ A;  3H8E A;  4ZY1 A;  1YD9 A;  1BPN A;  3KR4 A;  5FSU A;  4GVW A;  3JRU A;  3SIJ A;  2AFC A;  3SII A;  2X47 A;  3H8G A;  3EW5 A;  4ZX8 A;  3SIH A;  4D86 A;  3EKE A;  1ZR3 A;  2J9A A;  2FAV A;  5HIH A;  3GPG A;  4IQY A;  5AIL A;  3GPO A;  2FXK A;  3GQE A;  5FSY A;  4JVV A;  3EWO A;  4JGK A;  4KSI A;  3ETI A;  4KYB A;  3H8F A;  4ZX9 A;  2VRI A;  3EWR A;  4GVV A;  5DUS A;  5FSX A;  3EJG A;  3IIF A;  5FSV A;  4J4Z A;  4K3N A;  1ZR5 A;  4K0C A;  1HJZ A;  5CB3 A;  4ETK A;  4JCA A;  4R7M A;  2L8R A;  3GQO A;  4JLL A;  3VFQ A;  1LCP A;  4TU0 A;  4ZY2 A;  2LGR A;  1GYT A;  3IID A;  5HOL A;  1TY8 A;  4ZYQ A;  5CBM A;  1SPV A;  2DX6 A;  3EWP A;  4J5S A;  4ABL A;  2EEE A;  2EWB A;  3KQX A;  2ACF A;  2FG1 A;  5D8N A;  4R6T A;  1VHU A;  3Q6Z A;  3IJ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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