4GVVA

Crystal structure of de novo design serine hydrolase osh55.27, northeast structural genomics consortium (nesg) target or246
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
165
structure length
165
Chain Sequence
ARIRDVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVFRVMFEEIKKAPDTLEVTGVHGTEKSAEAGRRATLEHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
publication title Northeast Structural Genomics Consortium Target OR246
rcsb
molecule keywords De novo design serine hydrolase
total genus 55
structure length 165
sequence length 165
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-08-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 4gvvA00
3SIIA 3GPOA 1TY8A 3T8WA 2LGRA 4GUAA 2EWBA 4K0CA 3EW5A 3EWQA 3GPGA 4GVVA 2FXKA 3KZWA 3KQZA 2FAVA 1LAMA 4J5QA 2XD7A 2DX6A 2FG1A 2L8RA 1SPVA 3ETIA 4J5RA 4ABLA 4ESSA 4X2TA 4D86A 5CB5A 1YD9A 4JLLA 5E3BA 3IIDA 3SIJA 3GQEA 1BPNA 1BPMA 3H8GA 5HOLA 4J4ZA 1ZR5A 4UMLA 1GYTA 4IQYA 4JCAA 2J9AA 3EWOA 3EJFA 1BLLE 5CB3A 2AFCA 4KSIA 3SIGA 3PEIA 3V45A 5FSUA 3IIFA 3H8FA 2X47A 4K3NA 5CMSA 4ZY1A 1LAPA 5FSXA 1TXZA 1LANA 3IJ3A 3VFQA 4ZYQA 4GVWA 4ETJA 1ZR3A 3EJGA 5FSVA 5AILA 4J5SA 2ACFA 3Q71A 4TU0A 5CBMA 4R6TA 4ETKA 4ABKA 4ZX8A 1NJRA 4ZI6A 3GQOA 4JVVA 3JRUA 5FSZA 4ZY0A 4ZX9A 3EKEA 5HIHA 3KR5A 3EWPA 4KYBA 4R7MA 3KR4A 4JGKA 3Q6ZA 3GPQA 4ZY2A 3KQXA 3H8EA 5FSYA 4R76A 2VRIA 2BFQA 1LCPA 2BFRA 2EEEA 5DUSA 5D8NA 1HJZA 3EWRA 3SIHA 1VHUA 3JZTA 3V2BA
chains in the Genus database with same CATH superfamily
3SIIA 3GPOA 1TY8A 3T8WA 2KQVA 2LGRA 4GUAA 2EWBA 4K0CA 3EW5A 3EWQA 3GPGA 4GVVA 2FXKA 3KZWA 3KQZA 2FAVA 1LAMA 2W2GA 4J5QA 2XD7A 2DX6A 2FG1A 2L8RA 1SPVA 3ETIA 4J5RA 4ABLA 4ESSA 4X2TA 4D86A 5CB5A 1YD9A 2JZEA 4JLLA 5E3BA 3IIDA 3SIJA 3GQEA 1BPNA 1BPMA 3H8GA 5HOLA 4J4ZA 1ZR5A 2JZFA 4UMLA 1GYTA 4IQYA 4JCAA 2J9AA 3EWOA 3EJFA 1BLLE 5CB3A 2AFCA 4KSIA 3SIGA 3PEIA 3V45A 5FSUA 3IIFA 3H8FA 2X47A 4K3NA 5CMSA 4ZY1A 1LAPA 5FSXA 1TXZA 1LANA 3IJ3A 2RNKA 3VFQA 4ZYQA 2WCTA 4GVWA 4ETJA 1ZR3A 3EJGA 5FSVA 5AILA 4J5SA 2ACFA 3Q71A 4TU0A 5CBMA 4R6TA 4ETKA 4ABKA 4ZX8A 1NJRA 4ZI6A 3GQOA 4JVVA 3JRUA 5FSZA 4ZY0A 4ZX9A 3EKEA 5HIHA 3KR5A 3EWPA 4KYBA 4R7MA 3KR4A 4JGKA 3Q6ZA 3GPQA 2JZDA 4ZY2A 3KQXA 3H8EA 5FSYA 4R76A 2VRIA 2BFQA 1LCPA 2BFRA 2EEEA 5DUSA 5D8NA 1HJZA 3EWRA 3SIHA 1VHUA 3JZTA 3V2BA
chains in the Genus database with same CATH topology
3SIIA 3GPOA 1TY8A 3T8WA 2LGRA 4GUAA 2EWBA 4K0CA 3EW5A 3EWQA 3GPGA 4GVVA 2FXKA 3KZWA 3KQZA 2FAVA 1LAMA 4J5QA 2XD7A 2DX6A 2FG1A 2L8RA 1SPVA 3ETIA 4J5RA 4ABLA 4ESSA 4X2TA 4D86A 5CB5A 1YD9A 4JLLA 5E3BA 3IIDA 3SIJA 3GQEA 1BPNA 1BPMA 3H8GA 5HOLA 4J4ZA 1ZR5A 4UMLA 1GYTA 4IQYA 4JCAA 2J9AA 3EWOA 3EJFA 1BLLE 5CB3A 2AFCA 4KSIA 3SIGA 3PEIA 3V45A 5FSUA 3IIFA 3H8FA 2X47A 4K3NA 5CMSA 4ZY1A 1LAPA 5FSXA 1TXZA 1LANA 3IJ3A 3VFQA 4ZYQA 4GVWA 4ETJA 1ZR3A 3EJGA 5FSVA 5AILA 4J5SA 2ACFA 3Q71A 4TU0A 5CBMA 4R6TA 4ETKA 4ABKA 4ZX8A 1NJRA 4ZI6A 3GQOA 4JVVA 3JRUA 5FSZA 4ZY0A 4ZX9A 3EKEA 5HIHA 3KR5A 3EWPA 4KYBA 4R7MA 3KR4A 4JGKA 3Q6ZA 3GPQA 4ZY2A 3KQXA 3H8EA 5FSYA 4R76A 2VRIA 2BFQA 1LCPA 2BFRA 2EEEA 5DUSA 5D8NA 1HJZA 3EWRA 3SIHA 1VHUA 3JZTA 3V2BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SII A;  3GPO A;  1TY8 A;  3T8W A;  2LGR A;  4GUA A;  2EWB A;  4K0C A;  3EW5 A;  3EWQ A;  3GPG A;  4GVV A;  2FXK A;  3KZW A;  3KQZ A;  2FAV A;  1LAM A;  4J5Q A;  2XD7 A;  2DX6 A;  2FG1 A;  2L8R A;  1SPV A;  3ETI A;  4J5R A;  4ABL A;  4ESS A;  4X2T A;  4D86 A;  5CB5 A;  1YD9 A;  4JLL A;  5E3B A;  3IID A;  3SIJ A;  3GQE A;  1BPN A;  1BPM A;  3H8G A;  5HOL A;  4J4Z A;  1ZR5 A;  4UML A;  1GYT A;  4IQY A;  4JCA A;  2J9A A;  3EWO A;  3EJF A;  1BLL E;  5CB3 A;  2AFC A;  4KSI A;  3SIG A;  3PEI A;  3V45 A;  5FSU A;  3IIF A;  3H8F A;  2X47 A;  4K3N A;  5CMS A;  4ZY1 A;  1LAP A;  5FSX A;  1TXZ A;  1LAN A;  3IJ3 A;  3VFQ A;  4ZYQ A;  4GVW A;  4ETJ A;  1ZR3 A;  3EJG A;  5FSV A;  5AIL A;  4J5S A;  2ACF A;  3Q71 A;  4TU0 A;  5CBM A;  4R6T A;  4ETK A;  4ABK A;  4ZX8 A;  1NJR A;  4ZI6 A;  3GQO A;  4JVV A;  3JRU A;  5FSZ A;  4ZY0 A;  4ZX9 A;  3EKE A;  5HIH A;  3KR5 A;  3EWP A;  4KYB A;  4R7M A;  3KR4 A;  4JGK A;  3Q6Z A;  3GPQ A;  4ZY2 A;  3KQX A;  3H8E A;  5FSY A;  4R76 A;  2VRI A;  2BFQ A;  1LCP A;  2BFR A;  2EEE A;  5DUS A;  5D8N A;  1HJZ A;  3EWR A;  3SIH A;  1VHU A;  3JZT A;  3V2B A; 
#chains in the Genus database with same CATH topology
 3SII A;  3GPO A;  1TY8 A;  3T8W A;  2KQV A;  2LGR A;  4GUA A;  2EWB A;  4K0C A;  3EW5 A;  3EWQ A;  3GPG A;  4GVV A;  2FXK A;  3KZW A;  3KQZ A;  2FAV A;  1LAM A;  2W2G A;  4J5Q A;  2XD7 A;  2DX6 A;  2FG1 A;  2L8R A;  1SPV A;  3ETI A;  4J5R A;  4ABL A;  4ESS A;  4X2T A;  4D86 A;  5CB5 A;  1YD9 A;  2JZE A;  4JLL A;  5E3B A;  3IID A;  3SIJ A;  3GQE A;  1BPN A;  1BPM A;  3H8G A;  5HOL A;  4J4Z A;  1ZR5 A;  2JZF A;  4UML A;  1GYT A;  4IQY A;  4JCA A;  2J9A A;  3EWO A;  3EJF A;  1BLL E;  5CB3 A;  2AFC A;  4KSI A;  3SIG A;  3PEI A;  3V45 A;  5FSU A;  3IIF A;  3H8F A;  2X47 A;  4K3N A;  5CMS A;  4ZY1 A;  1LAP A;  5FSX A;  1TXZ A;  1LAN A;  3IJ3 A;  2RNK A;  3VFQ A;  4ZYQ A;  2WCT A;  4GVW A;  4ETJ A;  1ZR3 A;  3EJG A;  5FSV A;  5AIL A;  4J5S A;  2ACF A;  3Q71 A;  4TU0 A;  5CBM A;  4R6T A;  4ETK A;  4ABK A;  4ZX8 A;  1NJR A;  4ZI6 A;  3GQO A;  4JVV A;  3JRU A;  5FSZ A;  4ZY0 A;  4ZX9 A;  3EKE A;  5HIH A;  3KR5 A;  3EWP A;  4KYB A;  4R7M A;  3KR4 A;  4JGK A;  3Q6Z A;  3GPQ A;  2JZD A;  4ZY2 A;  3KQX A;  3H8E A;  5FSY A;  4R76 A;  2VRI A;  2BFQ A;  1LCP A;  2BFR A;  2EEE A;  5DUS A;  5D8N A;  1HJZ A;  3EWR A;  3SIH A;  1VHU A;  3JZT A;  3V2B A; 
#chains in the Genus database with same CATH homology
 3SII A;  3GPO A;  1TY8 A;  3T8W A;  2LGR A;  4GUA A;  2EWB A;  4K0C A;  3EW5 A;  3EWQ A;  3GPG A;  4GVV A;  2FXK A;  3KZW A;  3KQZ A;  2FAV A;  1LAM A;  4J5Q A;  2XD7 A;  2DX6 A;  2FG1 A;  2L8R A;  1SPV A;  3ETI A;  4J5R A;  4ABL A;  4ESS A;  4X2T A;  4D86 A;  5CB5 A;  1YD9 A;  4JLL A;  5E3B A;  3IID A;  3SIJ A;  3GQE A;  1BPN A;  1BPM A;  3H8G A;  5HOL A;  4J4Z A;  1ZR5 A;  4UML A;  1GYT A;  4IQY A;  4JCA A;  2J9A A;  3EWO A;  3EJF A;  1BLL E;  5CB3 A;  2AFC A;  4KSI A;  3SIG A;  3PEI A;  3V45 A;  5FSU A;  3IIF A;  3H8F A;  2X47 A;  4K3N A;  5CMS A;  4ZY1 A;  1LAP A;  5FSX A;  1TXZ A;  1LAN A;  3IJ3 A;  3VFQ A;  4ZYQ A;  4GVW A;  4ETJ A;  1ZR3 A;  3EJG A;  5FSV A;  5AIL A;  4J5S A;  2ACF A;  3Q71 A;  4TU0 A;  5CBM A;  4R6T A;  4ETK A;  4ABK A;  4ZX8 A;  1NJR A;  4ZI6 A;  3GQO A;  4JVV A;  3JRU A;  5FSZ A;  4ZY0 A;  4ZX9 A;  3EKE A;  5HIH A;  3KR5 A;  3EWP A;  4KYB A;  4R7M A;  3KR4 A;  4JGK A;  3Q6Z A;  3GPQ A;  4ZY2 A;  3KQX A;  3H8E A;  5FSY A;  4R76 A;  2VRI A;  2BFQ A;  1LCP A;  2BFR A;  2EEE A;  5DUS A;  5D8N A;  1HJZ A;  3EWR A;  3SIH A;  1VHU A;  3JZT A;  3V2B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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