4GVWA

Three-dimensional structure of the de novo designed serine hydrolase 2bfq_3, northeast structural genomics consortium (nesg) target or248
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
192
structure length
192
Chain Sequence
MEVLFEAKVGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDAEKVVETSLEAVKNFKGSAVKEVAEVHGARKSAEVALKVFERSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein, hydrolase
molecule keywords De novo designed serine hydrolase
publication title Northeast Structural Genomics Consortium Target OR248
rcsb
total genus 72
structure length 192
sequence length 192
ec nomenclature
pdb deposition date 2012-08-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 4gvwA00
1YD9A 5HOLA 4ZYQA 3GQOA 1ZR3A 4J5RA 3H8GA 4ETKA 4R7MA 5E3BA 3EW5A 4ZY0A 2FG1A 1BPNA 4GVVA 3KQZA 2X47A 2J9AA 5FSZA 3H8EA 1TXZA 5CB3A 5HIHA 4GVWA 4X2TA 3IIDA 2FXKA 4JGKA 5FSYA 3PEIA 3V2BA 4IQYA 4R76A 2BFQA 1SPVA 3VFQA 3KR4A 2BFRA 2VRIA 3GPGA 5CBMA 3T8WA 3EJFA 4K3NA 1BLLE 2FAVA 1GYTA 4JVVA 4ETJA 3KR5A 3SIIA 3ETIA 3EJGA 3V45A 3EWOA 5FSXA 3SIJA 4ABKA 3KQXA 4ZI6A 4R6TA 3EWRA 3EWPA 3KZWA 5D8NA 1LCPA 4ZY2A 1LAPA 5AILA 2ACFA 4K0CA 2L8RA 1LANA 4J5QA 4J5SA 3GPQA 3JZTA 5FSVA 3H8FA 4ZX9A 4ZX8A 3GPOA 2DX6A 4ABLA 4JCAA 1TY8A 3EWQA 3Q71A 4J4ZA 3Q6ZA 2EWBA 5CB5A 4D86A 4JLLA 4KSIA 3EKEA 4ESSA 4GUAA 3SIGA 1BPMA 1HJZA 3JRUA 3IJ3A 3SIHA 5CMSA 5FSUA 2EEEA 2XD7A 3GQEA 2AFCA 3IIFA 4KYBA 5DUSA 4ZY1A 4UMLA 1VHUA 2LGRA 1NJRA 4TU0A 1ZR5A 1LAMA
chains in the Genus database with same CATH superfamily
1YD9A 2KQVA 5HOLA 4ZYQA 2JZEA 3GQOA 1ZR3A 4J5RA 3H8GA 4ETKA 4R7MA 5E3BA 3EW5A 4ZY0A 2FG1A 1BPNA 4GVVA 3KQZA 2X47A 2J9AA 5FSZA 3H8EA 1TXZA 5CB3A 5HIHA 4GVWA 4X2TA 3IIDA 2FXKA 4JGKA 5FSYA 3PEIA 3V2BA 4IQYA 4R76A 2BFQA 1SPVA 3VFQA 2WCTA 3KR4A 2BFRA 2VRIA 3GPGA 5CBMA 3T8WA 3EJFA 4K3NA 1BLLE 2FAVA 1GYTA 4JVVA 4ETJA 3KR5A 3SIIA 3ETIA 3EJGA 3V45A 3EWOA 5FSXA 3SIJA 4ABKA 3KQXA 4ZI6A 2RNKA 4R6TA 3EWRA 3EWPA 3KZWA 5D8NA 1LCPA 4ZY2A 1LAPA 5AILA 2ACFA 4K0CA 2L8RA 1LANA 4J5QA 4J5SA 3GPQA 3JZTA 5FSVA 2W2GA 3H8FA 4ZX9A 2JZFA 4ZX8A 3GPOA 2DX6A 4ABLA 1TY8A 4JCAA 3EWQA 3Q71A 4J4ZA 2JZDA 3Q6ZA 2EWBA 5CB5A 4D86A 4JLLA 4KSIA 3EKEA 4ESSA 4GUAA 3SIGA 1BPMA 1HJZA 3JRUA 3IJ3A 3SIHA 5CMSA 5FSUA 2EEEA 2XD7A 3GQEA 2AFCA 3IIFA 4KYBA 5DUSA 4ZY1A 4UMLA 1VHUA 2LGRA 1NJRA 4TU0A 1ZR5A 1LAMA
chains in the Genus database with same CATH topology
1YD9A 5HOLA 4ZYQA 3GQOA 1ZR3A 4J5RA 3H8GA 4ETKA 4R7MA 5E3BA 3EW5A 4ZY0A 2FG1A 1BPNA 4GVVA 3KQZA 2X47A 2J9AA 5FSZA 3H8EA 1TXZA 5CB3A 5HIHA 4GVWA 4X2TA 3IIDA 2FXKA 4JGKA 5FSYA 3PEIA 3V2BA 4IQYA 4R76A 2BFQA 1SPVA 3VFQA 3KR4A 2BFRA 2VRIA 3GPGA 5CBMA 3T8WA 3EJFA 4K3NA 1BLLE 2FAVA 1GYTA 4JVVA 4ETJA 3KR5A 3SIIA 3ETIA 3EJGA 3V45A 3EWOA 5FSXA 3SIJA 4ABKA 3KQXA 4ZI6A 4R6TA 3EWRA 3EWPA 3KZWA 5D8NA 1LCPA 4ZY2A 1LAPA 5AILA 2ACFA 4K0CA 2L8RA 1LANA 4J5QA 4J5SA 3GPQA 3JZTA 5FSVA 3H8FA 4ZX9A 4ZX8A 3GPOA 2DX6A 4ABLA 4JCAA 1TY8A 3EWQA 3Q71A 4J4ZA 3Q6ZA 2EWBA 5CB5A 4D86A 4JLLA 4KSIA 3EKEA 4ESSA 4GUAA 3SIGA 1BPMA 1HJZA 3JRUA 3IJ3A 3SIHA 5CMSA 5FSUA 2EEEA 2XD7A 3GQEA 2AFCA 3IIFA 4KYBA 5DUSA 4ZY1A 4UMLA 1VHUA 2LGRA 1NJRA 4TU0A 1ZR5A 1LAMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YD9 A;  5HOL A;  4ZYQ A;  3GQO A;  1ZR3 A;  4J5R A;  3H8G A;  4ETK A;  4R7M A;  5E3B A;  3EW5 A;  4ZY0 A;  2FG1 A;  1BPN A;  4GVV A;  3KQZ A;  2X47 A;  2J9A A;  5FSZ A;  3H8E A;  1TXZ A;  5CB3 A;  5HIH A;  4GVW A;  4X2T A;  3IID A;  2FXK A;  4JGK A;  5FSY A;  3PEI A;  3V2B A;  4IQY A;  4R76 A;  2BFQ A;  1SPV A;  3VFQ A;  3KR4 A;  2BFR A;  2VRI A;  3GPG A;  5CBM A;  3T8W A;  3EJF A;  4K3N A;  1BLL E;  2FAV A;  1GYT A;  4JVV A;  4ETJ A;  3KR5 A;  3SII A;  3ETI A;  3EJG A;  3V45 A;  3EWO A;  5FSX A;  3SIJ A;  4ABK A;  3KQX A;  4ZI6 A;  4R6T A;  3EWR A;  3EWP A;  3KZW A;  5D8N A;  1LCP A;  4ZY2 A;  1LAP A;  5AIL A;  2ACF A;  4K0C A;  2L8R A;  1LAN A;  4J5Q A;  4J5S A;  3GPQ A;  3JZT A;  5FSV A;  3H8F A;  4ZX9 A;  4ZX8 A;  3GPO A;  2DX6 A;  4ABL A;  4JCA A;  1TY8 A;  3EWQ A;  3Q71 A;  4J4Z A;  3Q6Z A;  2EWB A;  5CB5 A;  4D86 A;  4JLL A;  4KSI A;  3EKE A;  4ESS A;  4GUA A;  3SIG A;  1BPM A;  1HJZ A;  3JRU A;  3IJ3 A;  3SIH A;  5CMS A;  5FSU A;  2EEE A;  2XD7 A;  3GQE A;  2AFC A;  3IIF A;  4KYB A;  5DUS A;  4ZY1 A;  4UML A;  1VHU A;  2LGR A;  1NJR A;  4TU0 A;  1ZR5 A;  1LAM A; 
#chains in the Genus database with same CATH topology
 1YD9 A;  2KQV A;  5HOL A;  4ZYQ A;  2JZE A;  3GQO A;  1ZR3 A;  4J5R A;  3H8G A;  4ETK A;  4R7M A;  5E3B A;  3EW5 A;  4ZY0 A;  2FG1 A;  1BPN A;  4GVV A;  3KQZ A;  2X47 A;  2J9A A;  5FSZ A;  3H8E A;  1TXZ A;  5CB3 A;  5HIH A;  4GVW A;  4X2T A;  3IID A;  2FXK A;  4JGK A;  5FSY A;  3PEI A;  3V2B A;  4IQY A;  4R76 A;  2BFQ A;  1SPV A;  3VFQ A;  2WCT A;  3KR4 A;  2BFR A;  2VRI A;  3GPG A;  5CBM A;  3T8W A;  3EJF A;  4K3N A;  1BLL E;  2FAV A;  1GYT A;  4JVV A;  4ETJ A;  3KR5 A;  3SII A;  3ETI A;  3EJG A;  3V45 A;  3EWO A;  5FSX A;  3SIJ A;  4ABK A;  3KQX A;  4ZI6 A;  2RNK A;  4R6T A;  3EWR A;  3EWP A;  3KZW A;  5D8N A;  1LCP A;  4ZY2 A;  1LAP A;  5AIL A;  2ACF A;  4K0C A;  2L8R A;  1LAN A;  4J5Q A;  4J5S A;  3GPQ A;  3JZT A;  5FSV A;  2W2G A;  3H8F A;  4ZX9 A;  2JZF A;  4ZX8 A;  3GPO A;  2DX6 A;  4ABL A;  1TY8 A;  4JCA A;  3EWQ A;  3Q71 A;  4J4Z A;  2JZD A;  3Q6Z A;  2EWB A;  5CB5 A;  4D86 A;  4JLL A;  4KSI A;  3EKE A;  4ESS A;  4GUA A;  3SIG A;  1BPM A;  1HJZ A;  3JRU A;  3IJ3 A;  3SIH A;  5CMS A;  5FSU A;  2EEE A;  2XD7 A;  3GQE A;  2AFC A;  3IIF A;  4KYB A;  5DUS A;  4ZY1 A;  4UML A;  1VHU A;  2LGR A;  1NJR A;  4TU0 A;  1ZR5 A;  1LAM A; 
#chains in the Genus database with same CATH homology
 1YD9 A;  5HOL A;  4ZYQ A;  3GQO A;  1ZR3 A;  4J5R A;  3H8G A;  4ETK A;  4R7M A;  5E3B A;  3EW5 A;  4ZY0 A;  2FG1 A;  1BPN A;  4GVV A;  3KQZ A;  2X47 A;  2J9A A;  5FSZ A;  3H8E A;  1TXZ A;  5CB3 A;  5HIH A;  4GVW A;  4X2T A;  3IID A;  2FXK A;  4JGK A;  5FSY A;  3PEI A;  3V2B A;  4IQY A;  4R76 A;  2BFQ A;  1SPV A;  3VFQ A;  3KR4 A;  2BFR A;  2VRI A;  3GPG A;  5CBM A;  3T8W A;  3EJF A;  4K3N A;  1BLL E;  2FAV A;  1GYT A;  4JVV A;  4ETJ A;  3KR5 A;  3SII A;  3ETI A;  3EJG A;  3V45 A;  3EWO A;  5FSX A;  3SIJ A;  4ABK A;  3KQX A;  4ZI6 A;  4R6T A;  3EWR A;  3EWP A;  3KZW A;  5D8N A;  1LCP A;  4ZY2 A;  1LAP A;  5AIL A;  2ACF A;  4K0C A;  2L8R A;  1LAN A;  4J5Q A;  4J5S A;  3GPQ A;  3JZT A;  5FSV A;  3H8F A;  4ZX9 A;  4ZX8 A;  3GPO A;  2DX6 A;  4ABL A;  4JCA A;  1TY8 A;  3EWQ A;  3Q71 A;  4J4Z A;  3Q6Z A;  2EWB A;  5CB5 A;  4D86 A;  4JLL A;  4KSI A;  3EKE A;  4ESS A;  4GUA A;  3SIG A;  1BPM A;  1HJZ A;  3JRU A;  3IJ3 A;  3SIH A;  5CMS A;  5FSU A;  2EEE A;  2XD7 A;  3GQE A;  2AFC A;  3IIF A;  4KYB A;  5DUS A;  4ZY1 A;  4UML A;  1VHU A;  2LGR A;  1NJR A;  4TU0 A;  1ZR5 A;  1LAM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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