4HDLA

Crystal structure of ppca f15l mutant
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
71
structure length
71
Chain Sequence
ADDIVLKAKNGDVKLPHKAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEEMKKGPTKCGECHKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords PpcA
publication title F15L mutant of PpcA
rcsb
source organism Geobacter sulfurreducens
total genus 13
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2012-10-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 4hdlA00
2N91A 1QN1A 1IT1A 1A2IA 1OFWA 3OUEA 1I77A 1L3OA 1GM4A 1AQEA 3H34A 3CARA 1J0OA 1H29A 2Z47A 1KWJA 1J0PA 2EWIA 2CVCA 3CAOA 1F22A 1EHJA 1GWSA 2EWUA 4HC3A 2YXCA 3OUQA 4HB8A 2CDVA 3CYRA 1OS6A 2KMYA 3OV0A 1W7OA 1GMBA 2CYMA 1UPDA 1UP9A 19HCA 3BXUA 3H4NA 2BQ4A 2CTHA 2FFNA 1OFYA 1CZJA 2A3PA 1GYOA 2LZZA 3SJ1X 4HAJA 1WADA 1QN0A 3H33A 2A3MA 2KSUA 1HH5A 2CY3A 3SELX 2E84A 3SJ0X 2YYWA 3SJ4X 1WR5A 4HB6A 1NEWA 2BPNA 1MDVA 1RWJA 2MZ9A 1LM2A 1DUWA 1Z1NX 4HDLA 2EWKA 4HBFA 2YYXA 2LDOA
chains in the Genus database with same CATH superfamily
2N91A 1QN1A 1IT1A 1A2IA 1OFWA 3OUEA 1I77A 1L3OA 1GM4A 1AQEA 3H34A 3CARA 1J0OA 1H29A 2Z47A 1KWJA 1J0PA 2EWIA 2CVCA 3CAOA 1F22A 1EHJA 1GWSA 2EWUA 4HC3A 2YXCA 3OUQA 4HB8A 2CDVA 3CYRA 1OS6A 2KMYA 3OV0A 1W7OA 1GMBA 2CYMA 1UPDA 1UP9A 19HCA 3BXUA 3H4NA 2BQ4A 2CTHA 2FFNA 1OFYA 1CZJA 2A3PA 1GYOA 2LZZA 3SJ1X 4HAJA 1WADA 1QN0A 3H33A 2A3MA 2KSUA 1HH5A 2CY3A 3SELX 2E84A 3SJ0X 2YYWA 3SJ4X 1WR5A 4HB6A 1NEWA 2BPNA 1MDVA 1RWJA 2MZ9A 1LM2A 1DUWA 1Z1NX 4HDLA 2EWKA 4HBFA 2YYXA 2LDOA
chains in the Genus database with same CATH topology
2N91A 1QN1A 1IT1A 1A2IA 1OFWA 3OUEA 1I77A 1L3OA 1GM4A 1AQEA 3H34A 3CARA 1J0OA 1H29A 2Z47A 1KWJA 1J0PA 2EWIA 2CVCA 3CAOA 1F22A 1EHJA 1GWSA 2EWUA 4HC3A 2YXCA 3OUQA 4HB8A 2CDVA 3CYRA 1OS6A 2KMYA 3OV0A 1W7OA 1GMBA 2CYMA 1UPDA 1UP9A 19HCA 3BXUA 3H4NA 2BQ4A 2CTHA 2FFNA 1OFYA 1CZJA 2A3PA 1GYOA 2LZZA 3SJ1X 4HAJA 1WADA 1QN0A 3H33A 2A3MA 2KSUA 1HH5A 2CY3A 3SELX 2E84A 3SJ0X 2YYWA 3SJ4X 1WR5A 4HB6A 1NEWA 2BPNA 1MDVA 1RWJA 2MZ9A 1LM2A 1DUWA 1Z1NX 4HDLA 2EWKA 4HBFA 2YYXA 2LDOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N91 A;  1QN1 A;  1IT1 A;  1A2I A;  1OFW A;  3OUE A;  1I77 A;  1L3O A;  1GM4 A;  1AQE A;  3H34 A;  3CAR A;  1J0O A;  1H29 A;  2Z47 A;  1KWJ A;  1J0P A;  2EWI A;  2CVC A;  3CAO A;  1F22 A;  1EHJ A;  1GWS A;  2EWU A;  4HC3 A;  2YXC A;  3OUQ A;  4HB8 A;  2CDV A;  3CYR A;  1OS6 A;  2KMY A;  3OV0 A;  1W7O A;  1GMB A;  2CYM A;  1UPD A;  1UP9 A;  19HC A;  3BXU A;  3H4N A;  2BQ4 A;  2CTH A;  2FFN A;  1OFY A;  1CZJ A;  2A3P A;  1GYO A;  2LZZ A;  3SJ1 X;  4HAJ A;  1WAD A;  1QN0 A;  3H33 A;  2A3M A;  2KSU A;  1HH5 A;  2CY3 A;  3SEL X;  2E84 A;  3SJ0 X;  2YYW A;  3SJ4 X;  1WR5 A;  4HB6 A;  1NEW A;  2BPN A;  1MDV A;  1RWJ A;  2MZ9 A;  1LM2 A;  1DUW A;  1Z1N X;  4HDL A;  2EWK A;  4HBF A;  2YYX A;  2LDO A; 
#chains in the Genus database with same CATH topology
 2N91 A;  1QN1 A;  1IT1 A;  1A2I A;  1OFW A;  3OUE A;  1I77 A;  1L3O A;  1GM4 A;  1AQE A;  3H34 A;  3CAR A;  1J0O A;  1H29 A;  2Z47 A;  1KWJ A;  1J0P A;  2EWI A;  2CVC A;  3CAO A;  1F22 A;  1EHJ A;  1GWS A;  2EWU A;  4HC3 A;  2YXC A;  3OUQ A;  4HB8 A;  2CDV A;  3CYR A;  1OS6 A;  2KMY A;  3OV0 A;  1W7O A;  1GMB A;  2CYM A;  1UPD A;  1UP9 A;  19HC A;  3BXU A;  3H4N A;  2BQ4 A;  2CTH A;  2FFN A;  1OFY A;  1CZJ A;  2A3P A;  1GYO A;  2LZZ A;  3SJ1 X;  4HAJ A;  1WAD A;  1QN0 A;  3H33 A;  2A3M A;  2KSU A;  1HH5 A;  2CY3 A;  3SEL X;  2E84 A;  3SJ0 X;  2YYW A;  3SJ4 X;  1WR5 A;  4HB6 A;  1NEW A;  2BPN A;  1MDV A;  1RWJ A;  2MZ9 A;  1LM2 A;  1DUW A;  1Z1N X;  4HDL A;  2EWK A;  4HBF A;  2YYX A;  2LDO A; 
#chains in the Genus database with same CATH homology
 2N91 A;  1QN1 A;  1IT1 A;  1A2I A;  1OFW A;  3OUE A;  1I77 A;  1L3O A;  1GM4 A;  1AQE A;  3H34 A;  3CAR A;  1J0O A;  1H29 A;  2Z47 A;  1KWJ A;  1J0P A;  2EWI A;  2CVC A;  3CAO A;  1F22 A;  1EHJ A;  1GWS A;  2EWU A;  4HC3 A;  2YXC A;  3OUQ A;  4HB8 A;  2CDV A;  3CYR A;  1OS6 A;  2KMY A;  3OV0 A;  1W7O A;  1GMB A;  2CYM A;  1UPD A;  1UP9 A;  19HC A;  3BXU A;  3H4N A;  2BQ4 A;  2CTH A;  2FFN A;  1OFY A;  1CZJ A;  2A3P A;  1GYO A;  2LZZ A;  3SJ1 X;  4HAJ A;  1WAD A;  1QN0 A;  3H33 A;  2A3M A;  2KSU A;  1HH5 A;  2CY3 A;  3SEL X;  2E84 A;  3SJ0 X;  2YYW A;  3SJ4 X;  1WR5 A;  4HB6 A;  1NEW A;  2BPN A;  1MDV A;  1RWJ A;  2MZ9 A;  1LM2 A;  1DUW A;  1Z1N X;  4HDL A;  2EWK A;  4HBF A;  2YYX A;  2LDO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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