4HFKA

Crystal structure of the type vi effector-immunity complex tae4-tai4 from enterobacter cloacae
Total Genus 41
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
160
structure length
160
Chain Sequence
MRPAFGAAWNRFKEVNVNVEQVGKLLGGKVQHNIDAGIFKNACPIRMSYVLNYCGIPVPSNSKYATVTGSDKKRYMFRVKDMIAFLPTVLGKADISVSSPTPAQFAGKQGIIIFTGHGWLDATGHVTLWNGNICSDDCHFLGSPGNGSFIPTNATFWSLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure of the type VI effector-immunity complex (Tae4-Tai4) provides novel insights into the inhibition mechanism of the effector by its immunity protein.
pubmed doi rcsb
molecule tags Hydrolase
source organism Enterobacter cloacae
molecule keywords Putative cytoplasmic protein
total genus 41
structure length 160
sequence length 160
chains with identical sequence C
ec nomenclature
pdb deposition date 2012-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14113 Tae4 Type VI secretion system (T6SS), amidase effector protein 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.70 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase fold (from Nostoc punctiforme) 4hfkA00
4J30A 4HFFA 4HFKA 4J32A 4JURA 4HFLA
chains in the Genus database with same CATH superfamily
2K3AA 4J30A 4EQ8A 3GT2A 3S0QA 3O98A 3M1UA 2VOBA 4F4MA 4F0WA 4HFKA 3PBIA 3PBCA 4FQBA 4OLKA 4Q4GX 4J32A 3VPJA 4EQAA 2IO9A 4FGEA 2LRJA 3NE0A 3KW0A 4HFLA 2XIVA 4FQAA 4HFFA 2K1GA 3I86A 4HZBA 4LJ1A 2IO8A 4HZ9A 4JXBA 2HBWA 3NPFA 2VPMA 4CT3A 4Q4TA 3VPIA 4FGIA 3A30A 3EBQA 3A2YA 3A2ZA 4R0KA 2IF6A 2EVRA 4FDYA 2WP7A 2IO7A 2IOBA 2VPSA 4HPEA 2FG0A 4F0VA 4CGKA 3H41A 4Q4NA 3PVQA 4CSHA 2IOAA 4JURA 4EOBA 4FGDA
chains in the Genus database with same CATH topology
2WP7A 4J30A 4HFFA 4HFKA 3EBQA 4J32A 4JURA 4HFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J30 A;  4HFF A;  4HFK A;  4J32 A;  4JUR A;  4HFL A; 
#chains in the Genus database with same CATH topology
 2K3A A;  4J30 A;  4EQ8 A;  3GT2 A;  3S0Q A;  3O98 A;  3M1U A;  2VOB A;  4F4M A;  4F0W A;  4HFK A;  3PBI A;  3PBC A;  4FQB A;  4OLK A;  4Q4G X;  4J32 A;  3VPJ A;  4EQA A;  2IO9 A;  4FGE A;  2LRJ A;  3NE0 A;  3KW0 A;  4HFL A;  2XIV A;  4FQA A;  4HFF A;  2K1G A;  3I86 A;  4HZB A;  4LJ1 A;  2IO8 A;  4HZ9 A;  4JXB A;  2HBW A;  3NPF A;  2VPM A;  4CT3 A;  4Q4T A;  3VPI A;  4FGI A;  3A30 A;  3EBQ A;  3A2Y A;  3A2Z A;  4R0K A;  2IF6 A;  2EVR A;  4FDY A;  2WP7 A;  2IO7 A;  2IOB A;  2VPS A;  4HPE A;  2FG0 A;  4F0V A;  4CGK A;  3H41 A;  4Q4N A;  3PVQ A;  4CSH A;  2IOA A;  4JUR A;  4EOB A;  4FGD A; 
#chains in the Genus database with same CATH homology
 2WP7 A;  4J30 A;  4HFF A;  4HFK A;  3EBQ A;  4J32 A;  4JUR A;  4HFL A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...