4HG3A

Structural insights into yeast nit2: wild-type yeast nit2 in complex with alpha-ketoglutarate
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
304
structure length
304
Chain Sequence
KLKRVAVAQLCSSADLTKNLKVVKELISEAIQKKADVVFLPEASDYLSQNPLHSRYLAQKSPKFIRQLQSSITDLVRDNSRNIDVSIGVHLPPSEQDLLEGNDRVRNVLLYIDHEGKILQEYQKLHLFDVDVPNGPILKESKSVQPGKAIPDIIESPLGKLGSAICYDIRFPEFSLKLRSMGAEILCFPSAFTIKTGEAHWELLGRARAVDTQCYVLMPGQVGMHDLSDPEWEKQSHMSALEKSSRRESWGHSMVIDPWGKIIAHADPSTVGPQLILADLDRELLQEIRNKMPLWNQRRDDLFH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Probable hydrolase NIT2
publication title Structures of enzyme-intermediate complexes of yeast Nit2: insights into its catalytic mechanism and different substrate specificity compared with mammalian Nit2
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 92
structure length 304
sequence length 304
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.128: Deaminated glutathione amidase.
pdb deposition date 2012-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 4hg3A00
5H8IA 4IZWA 1UF8A 1ERZA 2E2LA 4GYNA 2PLQA 4HG3A 2GGLA 2VHHA 3HKXA 4IZSA 4IZUA 3ILVA 3IW3A 4HG5A 1UF7A 1J31A 3SEZA 5KHAA 4GYLA 5JQNA 2GGKA 1UF4A 2E11A 2E2KA 3SEQA 3KI8A 5H8KA 4KZFA 3N05A 2DYUA 2UXYA 4CYGA 4H5UA 2DYVA 2W1VA 4IZVA 5H8LA 4CYYA 2VHIA 3DLAA 3SYTA 3IVZA 3P8KA 3SZGA 1FO6A 4HGDA 4CYFA 1UF5A 5H8JA 4LF0A 4F4HA 3WUYA 1F89A 3SDBA 3KLCA 4IZTA 1EMSA
chains in the Genus database with same CATH superfamily
5H8IA 4IZWA 1UF8A 1ERZA 2E2LA 4GYNA 2PLQA 4HG3A 2GGLA 2VHHA 3HKXA 4IZSA 4IZUA 3ILVA 3IW3A 4HG5A 1UF7A 1J31A 3SEZA 5KHAA 4GYLA 5JQNA 2GGKA 1UF4A 2E11A 2E2KA 3SEQA 3KI8A 5H8KA 4KZFA 3N05A 2DYUA 2UXYA 4CYGA 4H5UA 2DYVA 2W1VA 4IZVA 5H8LA 4CYYA 2VHIA 3DLAA 3SYTA 3IVZA 3P8KA 3SZGA 1FO6A 4HGDA 4CYFA 1UF5A 5H8JA 4LF0A 4F4HA 3WUYA 1F89A 3SDBA 3KLCA 4IZTA 1EMSA
chains in the Genus database with same CATH topology
5H8IA 4IZWA 1UF8A 1ERZA 2E2LA 4GYNA 2PLQA 4HG3A 2GGLA 2VHHA 3HKXA 4IZSA 4IZUA 3ILVA 3IW3A 4HG5A 1UF7A 1J31A 3SEZA 5KHAA 4GYLA 5JQNA 2GGKA 1UF4A 2E11A 2E2KA 3SEQA 3KI8A 5H8KA 4KZFA 3N05A 2DYUA 2UXYA 4CYGA 4H5UA 2DYVA 2W1VA 4IZVA 5H8LA 4CYYA 2VHIA 3DLAA 3SYTA 3IVZA 3P8KA 3SZGA 1FO6A 4HGDA 4CYFA 1UF5A 5H8JA 4LF0A 4F4HA 3WUYA 1F89A 3SDBA 3KLCA 4IZTA 1EMSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H8I A;  4IZW A;  1UF8 A;  1ERZ A;  2E2L A;  4GYN A;  2PLQ A;  4HG3 A;  2GGL A;  2VHH A;  3HKX A;  4IZS A;  4IZU A;  3ILV A;  3IW3 A;  4HG5 A;  1UF7 A;  1J31 A;  3SEZ A;  5KHA A;  4GYL A;  5JQN A;  2GGK A;  1UF4 A;  2E11 A;  2E2K A;  3SEQ A;  3KI8 A;  5H8K A;  4KZF A;  3N05 A;  2DYU A;  2UXY A;  4CYG A;  4H5U A;  2DYV A;  2W1V A;  4IZV A;  5H8L A;  4CYY A;  2VHI A;  3DLA A;  3SYT A;  3IVZ A;  3P8K A;  3SZG A;  1FO6 A;  4HGD A;  4CYF A;  1UF5 A;  5H8J A;  4LF0 A;  4F4H A;  3WUY A;  1F89 A;  3SDB A;  3KLC A;  4IZT A;  1EMS A; 
#chains in the Genus database with same CATH topology
 5H8I A;  4IZW A;  1UF8 A;  1ERZ A;  2E2L A;  4GYN A;  2PLQ A;  4HG3 A;  2GGL A;  2VHH A;  3HKX A;  4IZS A;  4IZU A;  3ILV A;  3IW3 A;  4HG5 A;  1UF7 A;  1J31 A;  3SEZ A;  5KHA A;  4GYL A;  5JQN A;  2GGK A;  1UF4 A;  2E11 A;  2E2K A;  3SEQ A;  3KI8 A;  5H8K A;  4KZF A;  3N05 A;  2DYU A;  2UXY A;  4CYG A;  4H5U A;  2DYV A;  2W1V A;  4IZV A;  5H8L A;  4CYY A;  2VHI A;  3DLA A;  3SYT A;  3IVZ A;  3P8K A;  3SZG A;  1FO6 A;  4HGD A;  4CYF A;  1UF5 A;  5H8J A;  4LF0 A;  4F4H A;  3WUY A;  1F89 A;  3SDB A;  3KLC A;  4IZT A;  1EMS A; 
#chains in the Genus database with same CATH homology
 5H8I A;  4IZW A;  1UF8 A;  1ERZ A;  2E2L A;  4GYN A;  2PLQ A;  4HG3 A;  2GGL A;  2VHH A;  3HKX A;  4IZS A;  4IZU A;  3ILV A;  3IW3 A;  4HG5 A;  1UF7 A;  1J31 A;  3SEZ A;  5KHA A;  4GYL A;  5JQN A;  2GGK A;  1UF4 A;  2E11 A;  2E2K A;  3SEQ A;  3KI8 A;  5H8K A;  4KZF A;  3N05 A;  2DYU A;  2UXY A;  4CYG A;  4H5U A;  2DYV A;  2W1V A;  4IZV A;  5H8L A;  4CYY A;  2VHI A;  3DLA A;  3SYT A;  3IVZ A;  3P8K A;  3SZG A;  1FO6 A;  4HGD A;  4CYF A;  1UF5 A;  5H8J A;  4LF0 A;  4F4H A;  3WUY A;  1F89 A;  3SDB A;  3KLC A;  4IZT A;  1EMS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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