4HGMB

Shark ignar variable domain
Total Genus 173
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
489
structure length
478
Chain Sequence
KSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVAEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCSLVNRRPCFSALE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Immune system
molecule keywords Shark V-NAR
publication title Atypical Antigen Recognition Mode of a Shark Immunoglobulin New Antigen Receptor (IgNAR) Variable Domain Characterized by Humanization and Structural Analysis.
pubmed doi rcsb
source organism Squalus acanthias
total genus 173
structure length 478
sequence length 489
ec nomenclature
pdb deposition date 2012-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00273 Serum_albumin Serum albumin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4hgmB02
1BKEA 2BXOA 4G04A 1HA2A 1UORA 2BXNA 4LUFA 1N5UA 3B9LA 1GNJA 5IIHA 2BXPA 3JQZA 4LA0A 2VUEA 1LOTA 4OR0A 3JRYA 1HK1A 4IW1A 1E7BA 5HOZA 4N0UD 2BXHA 3UIVA 1J78A 1E7IA 1MA9A 1BJ5A 2XVUA 1HK5A 5ID7A 1TF0A 1H9ZA 3LU8A 4ZBRA 1HK3A 2BXKA 4J2VA 1E7CA 3A73A 1E7GA 2BXCA 2I2ZA 2BXBA 4OT2A 1O9XA 4G03A 3V03A 4K71A 4PO0A 1HK2A 3V08A 3LU7A 5ID9A 3B9MA 5IJEA 2XVVA 4E99A 4JK4A 1GNIA 1E7EA 4LB9A 4HGKA 5IIUA 1E78A 2BXDA 5IJ5A 4ZBQA 4F5VA 5IJFA 4IW2A 4BKEA 3SQJA 2BXFA 4K2CA 1HK4A 5IFOA 5GHKA 2XW0A 4F5SA 2BX8A 2XVQA 2BXGA 5IIXA 1J7EA 4Z69A 3V09A 2BXIA 3LU6A 2BXMA 5DQFA 5DBYA 1E7HA 2BXQA 2XVWA 1AO6A 2VUFA 2XSIA 4F5UA 3TDLA 4EMXA 1E7AA 5FUOA 4LUHA 4S1YA 1KW2A 4LB2A 4N0FD 4L9QA 4F5TA 2XW1A 1BM0A 2I30A 2YDFA 1KXPD 3CX9A 2BXEA 4L8UA 4L9KA 2VDBA 1E7FA 2BXAA 4HGMB 2BXLA
chains in the Genus database with same CATH superfamily
1BKEA 2BXOA 2DYMA 3NVKA 4G04A 2NQOA 1HA2A 4GDLB 1UORA 2BXNA 4LUFA 3MHHB 2QHBA 1N5UA 3B9LA 2Z8IA 1GNJA 4N3ZA 4WA6B 5IIHA 2BXPA 3JQZA 5GIOA 3KJLA 4LA0A 2VUEA 4TQ1A 1LOTA 4OR0A 4M70B 2LQHA 2QMCA 3JRYA 1HK1A 4IW1A 1E7BA 2KBZA 2EFCA 4W4UB 5HOZA 4N0UD 1KDXA 2BXHA 1SB0A 3UIVA 4NAWB 1J78A 1E7IA 4FK5B 2AJEA 1MA9A 1BJ5A 2Z8KA 4D7XA 3G9KD 2QM6A 1LNSA 2DG5A 2XMOA 2XVUA 1HK5A 3WHSA 1TF0A 1VFIA 1H9ZA 3LU8A 3FNMA 5ID7A 4BY9C 4ZBRA 3W1SA 1VZSA 4TQ0A 1HK3A 2BXKA 5D7GA 4J2VA 1E7CA 5BPKA 3A73A 4G01A 3NVIA 2GUTA 2LXTA 1E7GA 2BXCA 2I2ZA 3VQIA 2BXBA 4ZUXV 4OT2A 1O9XA 3PLAA 4G03A 3V03A 4C31B 2K0NA 4K71A 4PO0A 4OTTA 1HK2A 3V08A 4DM0A 3LU7A 3NVMA 5ID9A 1JNBA 3B9MA 2EFDA 2JUHA 1TXUA 5IJEA 2AGHB 2XVVA 1IJGA 1MUHA 4E99A 2E0XA 4JK4A 2Z8JA 4Z9OA 3BPJA 1GNIA 3WHQA 1E7EA 4LB9A 2LQIA 4HGKA 3GA9L 3WHRA 5IIUA 1E78A 5B5TA 2BXDA 3MHSB 2DBWA 3H3AA 4ZCGA 5IJ5A 4ZBQA 3ECPA 3H37A 4F5VA 1MM8A 4GG2A 5IJFA 4IW2A 4BKEA 4ZBKA 3SQJA 2BXFA 3GQUA 1HK4A 4K2CA 1MIWA 5IFOA 5GHKA 2XW0A 4F5SA 3NMUA 2BX8A 2XVQA 2BXGA 3FWBC 4FIPB 5IIXA 1J7EA 2V36A 3V09A 4Z69A 1NT2B 2BXIA 1MIVA 2BXMA 2LOQA 2LXSA 3LU6A 5DQFA 2CKXA 5DBYA 2EFEA 1E7HA 5GIPA 2OZBB 2KWFA 4DHXB 2DBXA 2DBUA 2BXQA 2XVWA 1AO6A 3SIVB 2E0YA 2VUFA 4MBEC 2XSIA 4F5UA 2EFHA 3TDLA 2DYOA 3KIKA 4FJCB 4EMXA 1E7AA 4GDKB 5FUOA 2NNWA 3A75A 4LUHA 1KW2A 1MIYA 3GQXA 4LB2A 2ROHA 4GDXA 4S1YA 4N0FD 2OT3A 4L9QA 4F5TA 1MUSA 4ZC6A 2XW1A 1BM0A 3FWCC 2I30A 4I9OA 1H5WA 2YDFA 3M99C 4OTUA 1FOUA 1KXPD 3ICXA 3CX9A 3SIUB 2BXEA 5GINA 4L8UA 4L9KA 2VDBA 1E7FA 2BXAA 4HGMB 2BXLA
chains in the Genus database with same CATH topology
1BKEA 2BXOA 2DYMA 3NVKA 4G04A 2NQOA 1HA2A 4GDLB 1UORA 2BXNA 4LUFA 3MHHB 2QHBA 1N5UA 3B9LA 2Z8IA 1GNJA 4N3ZA 4WA6B 5IIHA 2BXPA 3JQZA 5GIOA 3KJLA 4LA0A 2VUEA 4TQ1A 1LOTA 4OR0A 4M70B 2QMCA 3JRYA 1HK1A 4IW1A 1E7BA 2KBZA 2EFCA 4W4UB 5HOZA 4N0UD 2BXHA 3UIVA 4NAWB 1J78A 1E7IA 4FK5B 2AJEA 1MA9A 1BJ5A 2Z8KA 3G9KD 2QM6A 1LNSA 2DG5A 2XMOA 2XVUA 1HK5A 3WHSA 1TF0A 1VFIA 1H9ZA 3LU8A 3FNMA 5ID7A 4BY9C 4ZBRA 3W1SA 1VZSA 4TQ0A 1HK3A 2BXKA 5D7GA 4J2VA 1E7CA 5BPKA 3A73A 4G01A 3NVIA 1E7GA 2BXCA 2I2ZA 3VQIA 2BXBA 4ZUXV 4OT2A 1O9XA 3PLAA 4G03A 3V03A 4C31B 4K71A 4PO0A 4OTTA 1HK2A 3V08A 3LU7A 3NVMA 5ID9A 1JNBA 3B9MA 2EFDA 2JUHA 1TXUA 5IJEA 2XVVA 1IJGA 4E99A 2E0XA 4JK4A 2Z8JA 4Z9OA 1GNIA 3WHQA 1E7EA 4LB9A 4HGKA 3GA9L 3WHRA 5IIUA 1E78A 5B5TA 2BXDA 3MHSB 2DBWA 3H3AA 4ZCGA 5IJ5A 4ZBQA 3H37A 4F5VA 4GG2A 5IJFA 4IW2A 4BKEA 4ZBKA 3SQJA 2BXFA 3GQUA 1HK4A 4K2CA 1MIWA 5IFOA 5GHKA 2XW0A 4F5SA 3NMUA 2BX8A 2XVQA 2BXGA 3FWBC 4FIPB 5IIXA 1J7EA 2V36A 3V09A 4Z69A 1NT2B 2BXIA 1MIVA 2BXMA 2LOQA 3LU6A 5DQFA 2CKXA 5DBYA 2EFEA 1E7HA 5GIPA 2OZBB 4DHXB 2DBXA 2DBUA 2BXQA 2XVWA 1AO6A 3SIVB 2E0YA 2VUFA 4MBEC 2XSIA 4F5UA 2EFHA 3TDLA 2DYOA 3KIKA 4FJCB 4EMXA 1E7AA 4GDKB 5FUOA 2NNWA 3A75A 4LUHA 1KW2A 1MIYA 3GQXA 4LB2A 2ROHA 4GDXA 4S1YA 4N0FD 2OT3A 4L9QA 4F5TA 4ZC6A 2XW1A 1BM0A 3FWCC 2I30A 4OTUA 1H5WA 2YDFA 3M99C 1FOUA 1KXPD 3ICXA 3CX9A 3SIUB 2BXEA 5GINA 4L8UA 4L9KA 2VDBA 1E7FA 2BXAA 4HGMB 2BXLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BKE A;  2BXO A;  4G04 A;  1HA2 A;  1UOR A;  2BXN A;  4LUF A;  1N5U A;  3B9L A;  1GNJ A;  5IIH A;  2BXP A;  3JQZ A;  4LA0 A;  2VUE A;  1LOT A;  4OR0 A;  3JRY A;  1HK1 A;  4IW1 A;  1E7B A;  5HOZ A;  4N0U D;  2BXH A;  3UIV A;  1J78 A;  1E7I A;  1MA9 A;  1BJ5 A;  2XVU A;  1HK5 A;  5ID7 A;  1TF0 A;  1H9Z A;  3LU8 A;  4ZBR A;  1HK3 A;  2BXK A;  4J2V A;  1E7C A;  3A73 A;  1E7G A;  2BXC A;  2I2Z A;  2BXB A;  4OT2 A;  1O9X A;  4G03 A;  3V03 A;  4K71 A;  4PO0 A;  1HK2 A;  3V08 A;  3LU7 A;  5ID9 A;  3B9M A;  5IJE A;  2XVV A;  4E99 A;  4JK4 A;  1GNI A;  1E7E A;  4LB9 A;  4HGK A;  5IIU A;  1E78 A;  2BXD A;  5IJ5 A;  4ZBQ A;  4F5V A;  5IJF A;  4IW2 A;  4BKE A;  3SQJ A;  2BXF A;  4K2C A;  1HK4 A;  5IFO A;  5GHK A;  2XW0 A;  4F5S A;  2BX8 A;  2XVQ A;  2BXG A;  5IIX A;  1J7E A;  4Z69 A;  3V09 A;  2BXI A;  3LU6 A;  2BXM A;  5DQF A;  5DBY A;  1E7H A;  2BXQ A;  2XVW A;  1AO6 A;  2VUF A;  2XSI A;  4F5U A;  3TDL A;  4EMX A;  1E7A A;  5FUO A;  4LUH A;  4S1Y A;  1KW2 A;  4LB2 A;  4N0F D;  4L9Q A;  4F5T A;  2XW1 A;  1BM0 A;  2I30 A;  2YDF A;  1KXP D;  3CX9 A;  2BXE A;  4L8U A;  4L9K A;  2VDB A;  1E7F A;  2BXA A;  4HGM B;  2BXL A; 
#chains in the Genus database with same CATH topology
 1BKE A;  2BXO A;  2DYM A;  3NVK A;  4G04 A;  2NQO A;  1HA2 A;  4GDL B;  1UOR A;  2BXN A;  4LUF A;  3MHH B;  2QHB A;  1N5U A;  3B9L A;  2Z8I A;  1GNJ A;  4N3Z A;  4WA6 B;  5IIH A;  2BXP A;  3JQZ A;  5GIO A;  3KJL A;  4LA0 A;  2VUE A;  4TQ1 A;  1LOT A;  4OR0 A;  4M70 B;  2LQH A;  2QMC A;  3JRY A;  1HK1 A;  4IW1 A;  1E7B A;  2KBZ A;  2EFC A;  4W4U B;  5HOZ A;  4N0U D;  1KDX A;  2BXH A;  1SB0 A;  3UIV A;  4NAW B;  1J78 A;  1E7I A;  4FK5 B;  2AJE A;  1MA9 A;  1BJ5 A;  2Z8K A;  4D7X A;  3G9K D;  2QM6 A;  1LNS A;  2DG5 A;  2XMO A;  2XVU A;  1HK5 A;  3WHS A;  1TF0 A;  1VFI A;  1H9Z A;  3LU8 A;  3FNM A;  5ID7 A;  4BY9 C;  4ZBR A;  3W1S A;  1VZS A;  4TQ0 A;  1HK3 A;  2BXK A;  5D7G A;  4J2V A;  1E7C A;  5BPK A;  3A73 A;  4G01 A;  3NVI A;  2GUT A;  2LXT A;  1E7G A;  2BXC A;  2I2Z A;  3VQI A;  2BXB A;  4ZUX V;  4OT2 A;  1O9X A;  3PLA A;  4G03 A;  3V03 A;  4C31 B;  2K0N A;  4K71 A;  4PO0 A;  4OTT A;  1HK2 A;  3V08 A;  4DM0 A;  3LU7 A;  3NVM A;  5ID9 A;  1JNB A;  3B9M A;  2EFD A;  2JUH A;  1TXU A;  5IJE A;  2AGH B;  2XVV A;  1IJG A;  1MUH A;  4E99 A;  2E0X A;  4JK4 A;  2Z8J A;  4Z9O A;  3BPJ A;  1GNI A;  3WHQ A;  1E7E A;  4LB9 A;  2LQI A;  4HGK A;  3GA9 L;  3WHR A;  5IIU A;  1E78 A;  5B5T A;  2BXD A;  3MHS B;  2DBW A;  3H3A A;  4ZCG A;  5IJ5 A;  4ZBQ A;  3ECP A;  3H37 A;  4F5V A;  1MM8 A;  4GG2 A;  5IJF A;  4IW2 A;  4BKE A;  4ZBK A;  3SQJ A;  2BXF A;  3GQU A;  1HK4 A;  4K2C A;  1MIW A;  5IFO A;  5GHK A;  2XW0 A;  4F5S A;  3NMU A;  2BX8 A;  2XVQ A;  2BXG A;  3FWB C;  4FIP B;  5IIX A;  1J7E A;  2V36 A;  3V09 A;  4Z69 A;  1NT2 B;  2BXI A;  1MIV A;  2BXM A;  2LOQ A;  2LXS A;  3LU6 A;  5DQF A;  2CKX A;  5DBY A;  2EFE A;  1E7H A;  5GIP A;  2OZB B;  2KWF A;  4DHX B;  2DBX A;  2DBU A;  2BXQ A;  2XVW A;  1AO6 A;  3SIV B;  2E0Y A;  2VUF A;  4MBE C;  2XSI A;  4F5U A;  2EFH A;  3TDL A;  2DYO A;  3KIK A;  4FJC B;  4EMX A;  1E7A A;  4GDK B;  5FUO A;  2NNW A;  3A75 A;  4LUH A;  1KW2 A;  1MIY A;  3GQX A;  4LB2 A;  2ROH A;  4GDX A;  4S1Y A;  4N0F D;  2OT3 A;  4L9Q A;  4F5T A;  1MUS A;  4ZC6 A;  2XW1 A;  1BM0 A;  3FWC C;  2I30 A;  4I9O A;  1H5W A;  2YDF A;  3M99 C;  4OTU A;  1FOU A;  1KXP D;  3ICX A;  3CX9 A;  3SIU B;  2BXE A;  5GIN A;  4L8U A;  4L9K A;  2VDB A;  1E7F A;  2BXA A;  4HGM B;  2BXL A; 
#chains in the Genus database with same CATH homology
 1BKE A;  2BXO A;  2DYM A;  3NVK A;  4G04 A;  2NQO A;  1HA2 A;  4GDL B;  1UOR A;  2BXN A;  4LUF A;  3MHH B;  2QHB A;  1N5U A;  3B9L A;  2Z8I A;  1GNJ A;  4N3Z A;  4WA6 B;  5IIH A;  2BXP A;  3JQZ A;  5GIO A;  3KJL A;  4LA0 A;  2VUE A;  4TQ1 A;  1LOT A;  4OR0 A;  4M70 B;  2QMC A;  3JRY A;  1HK1 A;  4IW1 A;  1E7B A;  2KBZ A;  2EFC A;  4W4U B;  5HOZ A;  4N0U D;  2BXH A;  3UIV A;  4NAW B;  1J78 A;  1E7I A;  4FK5 B;  2AJE A;  1MA9 A;  1BJ5 A;  2Z8K A;  3G9K D;  2QM6 A;  1LNS A;  2DG5 A;  2XMO A;  2XVU A;  1HK5 A;  3WHS A;  1TF0 A;  1VFI A;  1H9Z A;  3LU8 A;  3FNM A;  5ID7 A;  4BY9 C;  4ZBR A;  3W1S A;  1VZS A;  4TQ0 A;  1HK3 A;  2BXK A;  5D7G A;  4J2V A;  1E7C A;  5BPK A;  3A73 A;  4G01 A;  3NVI A;  1E7G A;  2BXC A;  2I2Z A;  3VQI A;  2BXB A;  4ZUX V;  4OT2 A;  1O9X A;  3PLA A;  4G03 A;  3V03 A;  4C31 B;  4K71 A;  4PO0 A;  4OTT A;  1HK2 A;  3V08 A;  3LU7 A;  3NVM A;  5ID9 A;  1JNB A;  3B9M A;  2EFD A;  2JUH A;  1TXU A;  5IJE A;  2XVV A;  1IJG A;  4E99 A;  2E0X A;  4JK4 A;  2Z8J A;  4Z9O A;  1GNI A;  3WHQ A;  1E7E A;  4LB9 A;  4HGK A;  3GA9 L;  3WHR A;  5IIU A;  1E78 A;  5B5T A;  2BXD A;  3MHS B;  2DBW A;  3H3A A;  4ZCG A;  5IJ5 A;  4ZBQ A;  3H37 A;  4F5V A;  4GG2 A;  5IJF A;  4IW2 A;  4BKE A;  4ZBK A;  3SQJ A;  2BXF A;  3GQU A;  1HK4 A;  4K2C A;  1MIW A;  5IFO A;  5GHK A;  2XW0 A;  4F5S A;  3NMU A;  2BX8 A;  2XVQ A;  2BXG A;  3FWB C;  4FIP B;  5IIX A;  1J7E A;  2V36 A;  3V09 A;  4Z69 A;  1NT2 B;  2BXI A;  1MIV A;  2BXM A;  2LOQ A;  3LU6 A;  5DQF A;  2CKX A;  5DBY A;  2EFE A;  1E7H A;  5GIP A;  2OZB B;  4DHX B;  2DBX A;  2DBU A;  2BXQ A;  2XVW A;  1AO6 A;  3SIV B;  2E0Y A;  2VUF A;  4MBE C;  2XSI A;  4F5U A;  2EFH A;  3TDL A;  2DYO A;  3KIK A;  4FJC B;  4EMX A;  1E7A A;  4GDK B;  5FUO A;  2NNW A;  3A75 A;  4LUH A;  1KW2 A;  1MIY A;  3GQX A;  4LB2 A;  2ROH A;  4GDX A;  4S1Y A;  4N0F D;  2OT3 A;  4L9Q A;  4F5T A;  4ZC6 A;  2XW1 A;  1BM0 A;  3FWC C;  2I30 A;  4OTU A;  1H5W A;  2YDF A;  3M99 C;  1FOU A;  1KXP D;  3ICX A;  3CX9 A;  3SIU B;  2BXE A;  5GIN A;  4L8U A;  4L9K A;  2VDB A;  1E7F A;  2BXA A;  4HGM B;  2BXL A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...