4HGMB

Shark ignar variable domain
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
489
structure length
478
Chain Sequence
KSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVAEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCSLVNRRPCFSALE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Shark V-NAR
publication title Atypical Antigen Recognition Mode of a Shark Immunoglobulin New Antigen Receptor (IgNAR) Variable Domain Characterized by Humanization and Structural Analysis.
pubmed doi rcsb
source organism Squalus acanthias
total genus 173
structure length 478
sequence length 489
ec nomenclature
pdb deposition date 2012-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00273 Serum_albumin Serum albumin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4hgmB02
2BXMA 4K71A 2VUFA 2VUEA 1HK5A 3LU8A 1E78A 3JRYA 2BXGA 1E7GA 2XW1A 3B9LA 4HGKA 4G04A 4ZBQA 1E7CA 1AO6A 2BXBA 5IIUA 4E99A 4F5TA 2VDBA 1E7HA 4N0UD 5IJ5A 1J7EA 1LOTA 2BXKA 3V03A 3TDLA 2BXFA 4N0FD 1HK2A 1E7IA 3V08A 1MA9A 4PO0A 1HK1A 2I30A 3A73A 1UORA 1GNJA 5IFOA 2BXEA 4L9QA 1GNIA 2BXNA 2BXIA 1N5UA 4LB2A 2XVVA 1BJ5A 2BXHA 1HA2A 1KXPD 1HK3A 1KW2A 3JQZA 4HGMB 4EMXA 3B9MA 4BKEA 2BXAA 5ID9A 4OT2A 2XW0A 1J78A 4G03A 4J2VA 2BXLA 4LUHA 2XSIA 1H9ZA 2BX8A 5DBYA 4L9KA 3LU6A 1TF0A 5GHKA 2BXPA 1E7EA 2BXQA 5IIXA 5FUOA 4LA0A 4L8UA 4IW2A 2XVQA 5IJEA 1E7FA 4LB9A 4OR0A 5HOZA 1E7BA 5DQFA 2I2ZA 4F5VA 4LUFA 2BXDA 1BM0A 5IIHA 2BXOA 5IJFA 4IW1A 4JK4A 1HK4A 3UIVA 4F5SA 1BKEA 2YDFA 4F5UA 2XVWA 2XVUA 4Z69A 4ZBRA 4S1YA 2BXCA 3SQJA 3LU7A 1O9XA 3V09A 1E7AA 5ID7A 3CX9A 4K2CA
chains in the Genus database with same CATH superfamily
2K0NA 3H37A 2EFCA 2AJEA 2BXMA 3ECPA 2KWFA 3NVMA 1KDXA 4K71A 3NMUA 2VUFA 2V36A 4D7XA 4FJCB 1MM8A 2VUEA 1HK5A 3LU8A 3FWCC 2LOQA 3VQIA 1E78A 3JRYA 2BXGA 1E7GA 1NT2B 1H5WA 2LQHA 2XW1A 3B9LA 4HGKA 4G04A 4GDKB 4ZBQA 2NQOA 1E7CA 2DYMA 4I9OA 2KBZA 4ZC6A 2OZBB 1AO6A 2BXBA 3M99C 5IIUA 1MUSA 2Z8JA 1TXUA 2NNWA 2OT3A 4E99A 4F5TA 2VDBA 2E0XA 3MHHB 4WA6B 5BPKA 1E7HA 3SIVB 2JUHA 4N0UD 5IJ5A 1J7EA 2CKXA 3H3AA 4TQ0A 2DBUA 1LOTA 2BXKA 3GQUA 3ICXA 3TDLA 4Z9OA 3V03A 3WHRA 2BXFA 3WHSA 4M70B 4N0FD 1HK2A 1E7IA 3V08A 1MA9A 3FWBC 4PO0A 4DM0A 1HK1A 2I30A 3A73A 4FK5B 4ZUXV 1UORA 2LQIA 1GNJA 2EFEA 4TQ1A 5IFOA 2BXEA 3BPJA 4L9QA 4GDLB 1GNIA 2BXNA 5GINA 3FNMA 4G01A 3A75A 1MIVA 2BXIA 1N5UA 2DBXA 4LB2A 2XVVA 1BJ5A 4MBEC 1IJGA 2BXHA 4N3ZA 1HA2A 1KXPD 1HK3A 3GA9L 4FIPB 1KW2A 3JQZA 4W4UB 4HGMB 4EMXA 3B9MA 4BKEA 2BXAA 3PLAA 5ID9A 4OT2A 2XW0A 3G9KD 4DHXB 1J78A 4G03A 2AGHB 4J2VA 2BXLA 4LUHA 4OTUA 4ZBKA 3NVIA 3SIUB 2XSIA 1VFIA 2GUTA 1H9ZA 2BX8A 5DBYA 4L9KA 3LU6A 1TF0A 3NVKA 4GDXA 1FOUA 2DBWA 5GHKA 3GQXA 2DYOA 4NAWB 2BXPA 5B5TA 1E7EA 2BXQA 5IIXA 1LNSA 3WHQA 2QMCA 4C31B 3KIKA 5FUOA 4LA0A 2LXTA 4L8UA 4IW2A 2EFHA 2XVQA 5IJEA 1E7FA 4LB9A 4OR0A 5HOZA 3KJLA 1E7BA 5DQFA 4OTTA 2I2ZA 2QHBA 4BY9C 4F5VA 2DG5A 4LUFA 2BXDA 1MIYA 1BM0A 3MHSB 5IIHA 2BXOA 5IJFA 1MUHA 4GG2A 2Z8IA 5GIPA 4IW1A 4JK4A 1HK4A 2XMOA 2ROHA 3UIVA 3W1SA 4F5SA 2Z8KA 5GIOA 1BKEA 2LXSA 2YDFA 1JNBA 5D7GA 2EFDA 2XVWA 1VZSA 2XVUA 2QM6A 4F5UA 4Z69A 4ZBRA 4S1YA 2BXCA 1MIWA 3LU7A 3SQJA 1O9XA 2E0YA 3V09A 1SB0A 1E7AA 5ID7A 3CX9A 4K2CA 4ZCGA
chains in the Genus database with same CATH topology
3H37A 2EFCA 2AJEA 2BXMA 3NVMA 4K71A 3NMUA 2VUFA 2V36A 4FJCB 2VUEA 1HK5A 3LU8A 3FWCC 2LOQA 3VQIA 1E78A 3JRYA 2BXGA 1E7GA 1NT2B 1H5WA 2XW1A 3B9LA 4HGKA 4G04A 4GDKB 4ZBQA 2NQOA 1E7CA 2DYMA 2OZBB 2KBZA 4ZC6A 1AO6A 2BXBA 3M99C 5IIUA 2Z8JA 1TXUA 2NNWA 2OT3A 4E99A 4F5TA 2VDBA 2E0XA 3MHHB 4WA6B 5BPKA 1E7HA 3SIVB 2JUHA 4N0UD 5IJ5A 1J7EA 2CKXA 3H3AA 4TQ0A 2DBUA 1LOTA 2BXKA 3GQUA 3ICXA 3TDLA 4Z9OA 3V03A 3WHRA 2BXFA 3WHSA 4M70B 4N0FD 1HK2A 1E7IA 3V08A 1MA9A 3FWBC 4PO0A 1HK1A 2I30A 3A73A 4FK5B 4ZUXV 1UORA 1GNJA 2EFEA 4TQ1A 5IFOA 2BXEA 4L9QA 4GDLB 1GNIA 2BXNA 5GINA 3FNMA 4G01A 3A75A 1MIVA 2BXIA 1N5UA 2DBXA 4LB2A 2XVVA 1BJ5A 4MBEC 1IJGA 2BXHA 4N3ZA 1HA2A 1KXPD 1HK3A 3GA9L 4FIPB 1KW2A 3JQZA 4W4UB 4HGMB 4EMXA 3B9MA 4BKEA 2BXAA 3PLAA 5ID9A 4OT2A 2XW0A 3G9KD 4DHXB 1J78A 4G03A 4J2VA 2BXLA 4LUHA 4OTUA 4ZBKA 3NVIA 3SIUB 2XSIA 1VFIA 1H9ZA 2BX8A 5DBYA 4L9KA 3LU6A 1TF0A 3NVKA 4GDXA 1FOUA 2DBWA 5GHKA 3GQXA 2DYOA 4NAWB 2BXPA 5B5TA 1E7EA 2BXQA 5IIXA 1LNSA 3WHQA 2QMCA 4C31B 3KIKA 5FUOA 4LA0A 4L8UA 4IW2A 2EFHA 2XVQA 5IJEA 1E7FA 4LB9A 4OR0A 5HOZA 3KJLA 1E7BA 5DQFA 4OTTA 2I2ZA 2QHBA 4BY9C 4F5VA 2DG5A 4LUFA 2BXDA 1MIYA 1BM0A 3MHSB 5IIHA 2BXOA 5IJFA 4GG2A 2Z8IA 5GIPA 4IW1A 4JK4A 1HK4A 2XMOA 2ROHA 3UIVA 3W1SA 4F5SA 2Z8KA 5GIOA 1BKEA 2YDFA 1JNBA 5D7GA 2EFDA 2XVWA 1VZSA 2XVUA 2QM6A 4F5UA 4Z69A 4ZBRA 4S1YA 2BXCA 1MIWA 3LU7A 3SQJA 1O9XA 2E0YA 3V09A 1E7AA 5ID7A 3CX9A 4K2CA 4ZCGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BXM A;  4K71 A;  2VUF A;  2VUE A;  1HK5 A;  3LU8 A;  1E78 A;  3JRY A;  2BXG A;  1E7G A;  2XW1 A;  3B9L A;  4HGK A;  4G04 A;  4ZBQ A;  1E7C A;  1AO6 A;  2BXB A;  5IIU A;  4E99 A;  4F5T A;  2VDB A;  1E7H A;  4N0U D;  5IJ5 A;  1J7E A;  1LOT A;  2BXK A;  3V03 A;  3TDL A;  2BXF A;  4N0F D;  1HK2 A;  1E7I A;  3V08 A;  1MA9 A;  4PO0 A;  1HK1 A;  2I30 A;  3A73 A;  1UOR A;  1GNJ A;  5IFO A;  2BXE A;  4L9Q A;  1GNI A;  2BXN A;  2BXI A;  1N5U A;  4LB2 A;  2XVV A;  1BJ5 A;  2BXH A;  1HA2 A;  1KXP D;  1HK3 A;  1KW2 A;  3JQZ A;  4HGM B;  4EMX A;  3B9M A;  4BKE A;  2BXA A;  5ID9 A;  4OT2 A;  2XW0 A;  1J78 A;  4G03 A;  4J2V A;  2BXL A;  4LUH A;  2XSI A;  1H9Z A;  2BX8 A;  5DBY A;  4L9K A;  3LU6 A;  1TF0 A;  5GHK A;  2BXP A;  1E7E A;  2BXQ A;  5IIX A;  5FUO A;  4LA0 A;  4L8U A;  4IW2 A;  2XVQ A;  5IJE A;  1E7F A;  4LB9 A;  4OR0 A;  5HOZ A;  1E7B A;  5DQF A;  2I2Z A;  4F5V A;  4LUF A;  2BXD A;  1BM0 A;  5IIH A;  2BXO A;  5IJF A;  4IW1 A;  4JK4 A;  1HK4 A;  3UIV A;  4F5S A;  1BKE A;  2YDF A;  4F5U A;  2XVW A;  2XVU A;  4Z69 A;  4ZBR A;  4S1Y A;  2BXC A;  3SQJ A;  3LU7 A;  1O9X A;  3V09 A;  1E7A A;  5ID7 A;  3CX9 A;  4K2C A; 
#chains in the Genus database with same CATH topology
 2K0N A;  3H37 A;  2EFC A;  2AJE A;  2BXM A;  3ECP A;  2KWF A;  3NVM A;  1KDX A;  4K71 A;  3NMU A;  2VUF A;  2V36 A;  4D7X A;  4FJC B;  1MM8 A;  2VUE A;  1HK5 A;  3LU8 A;  3FWC C;  2LOQ A;  3VQI A;  1E78 A;  3JRY A;  2BXG A;  1E7G A;  1NT2 B;  1H5W A;  2LQH A;  2XW1 A;  3B9L A;  4HGK A;  4G04 A;  4GDK B;  4ZBQ A;  2NQO A;  1E7C A;  2DYM A;  4I9O A;  2KBZ A;  4ZC6 A;  2OZB B;  1AO6 A;  2BXB A;  3M99 C;  5IIU A;  1MUS A;  2Z8J A;  1TXU A;  2NNW A;  2OT3 A;  4E99 A;  4F5T A;  2VDB A;  2E0X A;  3MHH B;  4WA6 B;  5BPK A;  1E7H A;  3SIV B;  2JUH A;  4N0U D;  5IJ5 A;  1J7E A;  2CKX A;  3H3A A;  4TQ0 A;  2DBU A;  1LOT A;  2BXK A;  3GQU A;  3ICX A;  3TDL A;  4Z9O A;  3V03 A;  3WHR A;  2BXF A;  3WHS A;  4M70 B;  4N0F D;  1HK2 A;  1E7I A;  3V08 A;  1MA9 A;  3FWB C;  4PO0 A;  4DM0 A;  1HK1 A;  2I30 A;  3A73 A;  4FK5 B;  4ZUX V;  1UOR A;  2LQI A;  1GNJ A;  2EFE A;  4TQ1 A;  5IFO A;  2BXE A;  3BPJ A;  4L9Q A;  4GDL B;  1GNI A;  2BXN A;  5GIN A;  3FNM A;  4G01 A;  3A75 A;  1MIV A;  2BXI A;  1N5U A;  2DBX A;  4LB2 A;  2XVV A;  1BJ5 A;  4MBE C;  1IJG A;  2BXH A;  4N3Z A;  1HA2 A;  1KXP D;  1HK3 A;  3GA9 L;  4FIP B;  1KW2 A;  3JQZ A;  4W4U B;  4HGM B;  4EMX A;  3B9M A;  4BKE A;  2BXA A;  3PLA A;  5ID9 A;  4OT2 A;  2XW0 A;  3G9K D;  4DHX B;  1J78 A;  4G03 A;  2AGH B;  4J2V A;  2BXL A;  4LUH A;  4OTU A;  4ZBK A;  3NVI A;  3SIU B;  2XSI A;  1VFI A;  2GUT A;  1H9Z A;  2BX8 A;  5DBY A;  4L9K A;  3LU6 A;  1TF0 A;  3NVK A;  4GDX A;  1FOU A;  2DBW A;  5GHK A;  3GQX A;  2DYO A;  4NAW B;  2BXP A;  5B5T A;  1E7E A;  2BXQ A;  5IIX A;  1LNS A;  3WHQ A;  2QMC A;  4C31 B;  3KIK A;  5FUO A;  4LA0 A;  2LXT A;  4L8U A;  4IW2 A;  2EFH A;  2XVQ A;  5IJE A;  1E7F A;  4LB9 A;  4OR0 A;  5HOZ A;  3KJL A;  1E7B A;  5DQF A;  4OTT A;  2I2Z A;  2QHB A;  4BY9 C;  4F5V A;  2DG5 A;  4LUF A;  2BXD A;  1MIY A;  1BM0 A;  3MHS B;  5IIH A;  2BXO A;  5IJF A;  1MUH A;  4GG2 A;  2Z8I A;  5GIP A;  4IW1 A;  4JK4 A;  1HK4 A;  2XMO A;  2ROH A;  3UIV A;  3W1S A;  4F5S A;  2Z8K A;  5GIO A;  1BKE A;  2LXS A;  2YDF A;  1JNB A;  5D7G A;  2EFD A;  2XVW A;  1VZS A;  2XVU A;  2QM6 A;  4F5U A;  4Z69 A;  4ZBR A;  4S1Y A;  2BXC A;  1MIW A;  3LU7 A;  3SQJ A;  1O9X A;  2E0Y A;  3V09 A;  1SB0 A;  1E7A A;  5ID7 A;  3CX9 A;  4K2C A;  4ZCG A; 
#chains in the Genus database with same CATH homology
 3H37 A;  2EFC A;  2AJE A;  2BXM A;  3NVM A;  4K71 A;  3NMU A;  2VUF A;  2V36 A;  4FJC B;  2VUE A;  1HK5 A;  3LU8 A;  3FWC C;  2LOQ A;  3VQI A;  1E78 A;  3JRY A;  2BXG A;  1E7G A;  1NT2 B;  1H5W A;  2XW1 A;  3B9L A;  4HGK A;  4G04 A;  4GDK B;  4ZBQ A;  2NQO A;  1E7C A;  2DYM A;  2OZB B;  2KBZ A;  4ZC6 A;  1AO6 A;  2BXB A;  3M99 C;  5IIU A;  2Z8J A;  1TXU A;  2NNW A;  2OT3 A;  4E99 A;  4F5T A;  2VDB A;  2E0X A;  3MHH B;  4WA6 B;  5BPK A;  1E7H A;  3SIV B;  2JUH A;  4N0U D;  5IJ5 A;  1J7E A;  2CKX A;  3H3A A;  4TQ0 A;  2DBU A;  1LOT A;  2BXK A;  3GQU A;  3ICX A;  3TDL A;  4Z9O A;  3V03 A;  3WHR A;  2BXF A;  3WHS A;  4M70 B;  4N0F D;  1HK2 A;  1E7I A;  3V08 A;  1MA9 A;  3FWB C;  4PO0 A;  1HK1 A;  2I30 A;  3A73 A;  4FK5 B;  4ZUX V;  1UOR A;  1GNJ A;  2EFE A;  4TQ1 A;  5IFO A;  2BXE A;  4L9Q A;  4GDL B;  1GNI A;  2BXN A;  5GIN A;  3FNM A;  4G01 A;  3A75 A;  1MIV A;  2BXI A;  1N5U A;  2DBX A;  4LB2 A;  2XVV A;  1BJ5 A;  4MBE C;  1IJG A;  2BXH A;  4N3Z A;  1HA2 A;  1KXP D;  1HK3 A;  3GA9 L;  4FIP B;  1KW2 A;  3JQZ A;  4W4U B;  4HGM B;  4EMX A;  3B9M A;  4BKE A;  2BXA A;  3PLA A;  5ID9 A;  4OT2 A;  2XW0 A;  3G9K D;  4DHX B;  1J78 A;  4G03 A;  4J2V A;  2BXL A;  4LUH A;  4OTU A;  4ZBK A;  3NVI A;  3SIU B;  2XSI A;  1VFI A;  1H9Z A;  2BX8 A;  5DBY A;  4L9K A;  3LU6 A;  1TF0 A;  3NVK A;  4GDX A;  1FOU A;  2DBW A;  5GHK A;  3GQX A;  2DYO A;  4NAW B;  2BXP A;  5B5T A;  1E7E A;  2BXQ A;  5IIX A;  1LNS A;  3WHQ A;  2QMC A;  4C31 B;  3KIK A;  5FUO A;  4LA0 A;  4L8U A;  4IW2 A;  2EFH A;  2XVQ A;  5IJE A;  1E7F A;  4LB9 A;  4OR0 A;  5HOZ A;  3KJL A;  1E7B A;  5DQF A;  4OTT A;  2I2Z A;  2QHB A;  4BY9 C;  4F5V A;  2DG5 A;  4LUF A;  2BXD A;  1MIY A;  1BM0 A;  3MHS B;  5IIH A;  2BXO A;  5IJF A;  4GG2 A;  2Z8I A;  5GIP A;  4IW1 A;  4JK4 A;  1HK4 A;  2XMO A;  2ROH A;  3UIV A;  3W1S A;  4F5S A;  2Z8K A;  5GIO A;  1BKE A;  2YDF A;  1JNB A;  5D7G A;  2EFD A;  2XVW A;  1VZS A;  2XVU A;  2QM6 A;  4F5U A;  4Z69 A;  4ZBR A;  4S1Y A;  2BXC A;  1MIW A;  3LU7 A;  3SQJ A;  1O9X A;  2E0Y A;  3V09 A;  1E7A A;  5ID7 A;  3CX9 A;  4K2C A;  4ZCG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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