4HH6A

Peptide from eaec t6ss sci1 scii protein
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
157
structure length
157
Chain Sequence
ENSAALLRRLNHYCARALEGAASLCQTRAHAEITPEHWLLKLLEQGEGDLTVLGRRYDWDMDAIWQSLLGWLDNQPRSVRSRPQLAQSLNALLKQAWMVASLQGEEHIRSVHLLGALTENPHLVRCDGLWPLLTLSQSQLQRLSPLLDAQSDECPET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Role and specificity of ClpV ATPases in T6SS secretion.
rcsb
molecule tags Protein binding
source organism Escherichia coli
molecule keywords Putative type VI secretion protein
total genus 56
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 2012-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 4hh6A00
1KSFX 1R6OA 2Y1QA 5GUIA 3FH2A 1MBUA 1R6CX 3PXGA 3FESA 1R6QA 3WDDA 2K77A 5HBNA 2Y1RA 1LZWB 4HH6A 3ZRJA 3WDEA 3ZRIA 4IODA 3WDCA 4IRFA 4Y0BA 1QVRA 1MG9B 4HH5A 4UQWA 4Y0CA 1KHYA 1K6KA 1MBXA 3WDBA 1MBVA 4P15A 1R6BX
chains in the Genus database with same CATH superfamily
1KSFX 1R6OA 2Y1QA 5GUIA 3FH2A 1MBUA 1R6CX 3PXGA 3FESA 1R6QA 3WDDA 2K77A 5HBNA 2Y1RA 1LZWB 4HH6A 3ZRJA 3WDEA 3ZRIA 4IODA 3WDCA 4IRFA 4Y0BA 1QVRA 1MG9B 4HH5A 4UQWA 4Y0CA 1KHYA 1K6KA 1MBXA 3WDBA 1MBVA 4P15A 1R6BX
chains in the Genus database with same CATH topology
1KSFX 1R6OA 2Y1QA 5GUIA 3FH2A 1MBUA 1R6CX 3PXGA 3FESA 1R6QA 3WDDA 2K77A 5HBNA 2Y1RA 1LZWB 4HH6A 3ZRJA 3WDEA 3ZRIA 4IODA 3WDCA 4IRFA 4Y0BA 1QVRA 1MG9B 4HH5A 4UQWA 4Y0CA 1KHYA 1K6KA 1MBXA 3WDBA 1MBVA 4P15A 1R6BX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KSF X;  1R6O A;  2Y1Q A;  5GUI A;  3FH2 A;  1MBU A;  1R6C X;  3PXG A;  3FES A;  1R6Q A;  3WDD A;  2K77 A;  5HBN A;  2Y1R A;  1LZW B;  4HH6 A;  3ZRJ A;  3WDE A;  3ZRI A;  4IOD A;  3WDC A;  4IRF A;  4Y0B A;  1QVR A;  1MG9 B;  4HH5 A;  4UQW A;  4Y0C A;  1KHY A;  1K6K A;  1MBX A;  3WDB A;  1MBV A;  4P15 A;  1R6B X; 
#chains in the Genus database with same CATH topology
 1KSF X;  1R6O A;  2Y1Q A;  5GUI A;  3FH2 A;  1MBU A;  1R6C X;  3PXG A;  3FES A;  1R6Q A;  3WDD A;  2K77 A;  5HBN A;  2Y1R A;  1LZW B;  4HH6 A;  3ZRJ A;  3WDE A;  3ZRI A;  4IOD A;  3WDC A;  4IRF A;  4Y0B A;  1QVR A;  1MG9 B;  4HH5 A;  4UQW A;  4Y0C A;  1KHY A;  1K6K A;  1MBX A;  3WDB A;  1MBV A;  4P15 A;  1R6B X; 
#chains in the Genus database with same CATH homology
 1KSF X;  1R6O A;  2Y1Q A;  5GUI A;  3FH2 A;  1MBU A;  1R6C X;  3PXG A;  3FES A;  1R6Q A;  3WDD A;  2K77 A;  5HBN A;  2Y1R A;  1LZW B;  4HH6 A;  3ZRJ A;  3WDE A;  3ZRI A;  4IOD A;  3WDC A;  4IRF A;  4Y0B A;  1QVR A;  1MG9 B;  4HH5 A;  4UQW A;  4Y0C A;  1KHY A;  1K6K A;  1MBX A;  3WDB A;  1MBV A;  4P15 A;  1R6B X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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