4HHSA

Crystal structure of fatty acid alpha-dioxygenase (arabidopsis thaliana)
Total Genus 256
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
256
sequence length
639
structure length
639
Chain Sequence
MKVITSLISSILLKFIHKDFHEIYARMSLLDRFLLLIVHGVDKMVPWHKLPVFLGLTYLEVRRHLHQQYNLLNVGQTPTGIRFDPANYPYRTADGKFNDPFNEGVGSQNSFFGRNCPPVDQKSKLRRPDPMVVATKLLGRKKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTHQIELVAPKEVASKCPLSSFRFLKTKEVPTGFFEIKTGSQNIRTPWWDSSVIYGSNSKTLDRVRTYKDGKLKISEETGLLLHDEDGLAISGDIRNSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSAVVAKIHTIDWTVQLLKTDTLLAGMRANWYGLLGKKFKDSFGHAGSSILGGVVGMKKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVPGTNKSLPLIQEISMRDLIGRKGEETMSHIGFTKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQARPDHVDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVYDGDVEELDLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFFTSDFNETIYTKKGLEWVNTTESLKDVIDRHYPDMTDKWMNSESAFSVWDSPPLTKNPIPLYLRIPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Alpha-dioxygenase
publication title The crystal structure of alpha-Dioxygenase provides insight into diversity in the cyclooxygenase-peroxidase superfamily.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 256
structure length 639
sequence length 639
ec nomenclature
pdb deposition date 2012-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 4hhsA01
4DL1C 4KVLA 4PNXA 2NQXA 3S4FA 1IGZA 3QMOA 3PY4A 1U67A 5FF1A 4C1MC 3NTBA 4FM5A 2O86A 3R5OA 4LJJA 1EQHA 3OGWA 5FIWC 4Y55A 3QL6A 3PGHA 3F9PC 4RS0A 5IKQA 2AYLA 5KIRA 5IKRA 4IG5A 3QF1A 1D7WC 3RR3A 3GCJA 4E1GA 4HHSA 3FNLA 1DDXA 5JW1A 1MYPC 2PT3A 4QJQA 4RUTA 3R5QA 5JVYA 1D5LC 3HS6A 3N8XA 2OYEP 3UBAA 3ERIA 4OTJA 1FE2A 4GM7A 4O1ZA 4KSZA 2R5LA 3SXVA 4NJBA 3TGYA 3R4XA 2OJVA 3NIUA 3GCLA 3LN1A 3N8FA 4OEKA 3R55A 1Q4GA 1PTHA 5GLSA 1PRHA 2Z5ZA 3ZS0C 6COXA 1EBVA 4RRYA 1DIYA 1CQEA 4NT3A 3N8YB 4QYQA 3N8WB 2QRBA 3I6NA 2E9EA 2EFBA 3KRKA 1DNUC 3BXIA 3NT1A 4RRXA 5GH0A 4HHRA 2EHAA 3FAQA 3N8ZA 3N8VA 1PGEA 5F19A 3NYHA 5B72A 4OTYA 1IGXA 5F1AA 1CVUA 5JVZA 2OYUP 3QH0A 2IKCA 4GN6A 4RRZA 1D2VC 4Z0LA 3N8YA 4KVJA 4M11A 4RRWA 3GCKA 3LN0A 3NTGA 3N8WA 3OLUA 2IPSA 2GJMA 3MDLA 3OLTA 1HT5A 3HS7A 3ZS1C 5COXA 1CXPC 2PUMA 4KVKA 3TZIA 1HT8A 3MQEA 4MSFA 5HPWA 4M10A 3RKEA 5IKVA 1EQGA 1MHLC 3V6QA 5IKTA 3KK6A 1DNWC 2QPKA 3GC1A 5FDQA 2QQTA 3Q7DA 3NAKA 3Q9KA 3HS5A 1PXXA 4PH9A 4COXA 3KRQA 4N7AA 3ERHA 1CX2A
chains in the Genus database with same CATH superfamily
4DL1C 4KVLA 4PNXA 2NQXA 3S4FA 1IGZA 3QMOA 3PY4A 1U67A 5FF1A 4C1MC 3NTBA 4FM5A 2O86A 3R5OA 4LJJA 1EQHA 3OGWA 5FIWC 4Y55A 3QL6A 3PGHA 3F9PC 4RS0A 5IKQA 2AYLA 5KIRA 5IKRA 4IG5A 3QF1A 1D7WC 3RR3A 3GCJA 4E1GA 4HHSA 3FNLA 1DDXA 5JW1A 1MYPC 2PT3A 4QJQA 4RUTA 3R5QA 5JVYA 1D5LC 3HS6A 3N8XA 2OYEP 3UBAA 3ERIA 4OTJA 1FE2A 4GM7A 4O1ZA 4KSZA 2R5LA 3SXVA 4NJBA 3TGYA 3R4XA 2OJVA 3NIUA 3GCLA 3LN1A 3N8FA 4OEKA 3R55A 1Q4GA 1PTHA 5GLSA 1PRHA 2Z5ZA 3ZS0C 6COXA 1EBVA 4RRYA 1DIYA 1CQEA 4NT3A 3N8YB 4QYQA 3N8WB 2QRBA 3I6NA 2E9EA 2EFBA 3KRKA 1DNUC 3BXIA 3NT1A 4RRXA 5GH0A 4HHRA 2EHAA 3FAQA 3N8ZA 3N8VA 1PGEA 5F19A 3NYHA 5B72A 4OTYA 1IGXA 5F1AA 1CVUA 5JVZA 2OYUP 3QH0A 2IKCA 4GN6A 4RRZA 1D2VC 4Z0LA 3N8YA 4KVJA 4M11A 4RRWA 3GCKA 3LN0A 3NTGA 3N8WA 3OLUA 2IPSA 2GJMA 3MDLA 3OLTA 1HT5A 3HS7A 3ZS1C 5COXA 1CXPC 2PUMA 4KVKA 3TZIA 1HT8A 3MQEA 4MSFA 5HPWA 4M10A 3RKEA 5IKVA 1EQGA 1MHLC 3V6QA 5IKTA 3KK6A 1DNWC 2QPKA 3GC1A 5FDQA 2QQTA 3Q7DA 3NAKA 3Q9KA 3HS5A 1PXXA 4PH9A 4COXA 3KRQA 4N7AA 3ERHA 1CX2A
chains in the Genus database with same CATH topology
4DL1C 4KVLA 4PNXA 2NQXA 3S4FA 1IGZA 3QMOA 3PY4A 1U67A 5FF1A 4C1MC 3NTBA 4FM5A 2O86A 3R5OA 4LJJA 1EQHA 3OGWA 5FIWC 4Y55A 3QL6A 3PGHA 3F9PC 4RS0A 5IKQA 2AYLA 5KIRA 5IKRA 4IG5A 3QF1A 1D7WC 3RR3A 3GCJA 4E1GA 4HHSA 3FNLA 1DDXA 5JW1A 1MYPC 2PT3A 4QJQA 4RUTA 3R5QA 5JVYA 1D5LC 3HS6A 3N8XA 2OYEP 3UBAA 3ERIA 4OTJA 1FE2A 4GM7A 4O1ZA 4KSZA 2R5LA 3SXVA 4NJBA 3TGYA 3R4XA 2OJVA 3NIUA 3GCLA 3LN1A 3N8FA 4OEKA 3R55A 1Q4GA 1PTHA 5GLSA 1PRHA 2Z5ZA 3ZS0C 6COXA 1EBVA 4RRYA 1DIYA 1CQEA 4NT3A 3N8YB 4QYQA 3N8WB 2QRBA 3I6NA 2E9EA 2EFBA 3KRKA 1DNUC 3BXIA 3NT1A 4RRXA 5GH0A 4HHRA 2EHAA 3FAQA 3N8ZA 3N8VA 1PGEA 5F19A 3NYHA 5B72A 4OTYA 1IGXA 5F1AA 1CVUA 5JVZA 2OYUP 3QH0A 2IKCA 4GN6A 4RRZA 1D2VC 4Z0LA 3N8YA 4KVJA 4M11A 4RRWA 3GCKA 3LN0A 3NTGA 3N8WA 3OLUA 2IPSA 2GJMA 3MDLA 3OLTA 1HT5A 3HS7A 3ZS1C 5COXA 1CXPC 2PUMA 4KVKA 3TZIA 1HT8A 3MQEA 4MSFA 5HPWA 4M10A 3RKEA 5IKVA 1EQGA 1MHLC 3V6QA 5IKTA 3KK6A 1DNWC 2QPKA 3GC1A 5FDQA 2QQTA 3Q7DA 3NAKA 3Q9KA 3HS5A 1PXXA 4PH9A 4COXA 3KRQA 4N7AA 3ERHA 1CX2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DL1 C;  4KVL A;  4PNX A;  2NQX A;  3S4F A;  1IGZ A;  3QMO A;  3PY4 A;  1U67 A;  5FF1 A;  4C1M C;  3NTB A;  4FM5 A;  2O86 A;  3R5O A;  4LJJ A;  1EQH A;  3OGW A;  5FIW C;  4Y55 A;  3QL6 A;  3PGH A;  3F9P C;  4RS0 A;  5IKQ A;  2AYL A;  5KIR A;  5IKR A;  4IG5 A;  3QF1 A;  1D7W C;  3RR3 A;  3GCJ A;  4E1G A;  4HHS A;  3FNL A;  1DDX A;  5JW1 A;  1MYP C;  2PT3 A;  4QJQ A;  4RUT A;  3R5Q A;  5JVY A;  1D5L C;  3HS6 A;  3N8X A;  2OYE P;  3UBA A;  3ERI A;  4OTJ A;  1FE2 A;  4GM7 A;  4O1Z A;  4KSZ A;  2R5L A;  3SXV A;  4NJB A;  3TGY A;  3R4X A;  2OJV A;  3NIU A;  3GCL A;  3LN1 A;  3N8F A;  4OEK A;  3R55 A;  1Q4G A;  1PTH A;  5GLS A;  1PRH A;  2Z5Z A;  3ZS0 C;  6COX A;  1EBV A;  4RRY A;  1DIY A;  1CQE A;  4NT3 A;  3N8Y B;  4QYQ A;  3N8W B;  2QRB A;  3I6N A;  2E9E A;  2EFB A;  3KRK A;  1DNU C;  3BXI A;  3NT1 A;  4RRX A;  5GH0 A;  4HHR A;  2EHA A;  3FAQ A;  3N8Z A;  3N8V A;  1PGE A;  5F19 A;  3NYH A;  5B72 A;  4OTY A;  1IGX A;  5F1A A;  1CVU A;  5JVZ A;  2OYU P;  3QH0 A;  2IKC A;  4GN6 A;  4RRZ A;  1D2V C;  4Z0L A;  3N8Y A;  4KVJ A;  4M11 A;  4RRW A;  3GCK A;  3LN0 A;  3NTG A;  3N8W A;  3OLU A;  2IPS A;  2GJM A;  3MDL A;  3OLT A;  1HT5 A;  3HS7 A;  3ZS1 C;  5COX A;  1CXP C;  2PUM A;  4KVK A;  3TZI A;  1HT8 A;  3MQE A;  4MSF A;  5HPW A;  4M10 A;  3RKE A;  5IKV A;  1EQG A;  1MHL C;  3V6Q A;  5IKT A;  3KK6 A;  1DNW C;  2QPK A;  3GC1 A;  5FDQ A;  2QQT A;  3Q7D A;  3NAK A;  3Q9K A;  3HS5 A;  1PXX A;  4PH9 A;  4COX A;  3KRQ A;  4N7A A;  3ERH A;  1CX2 A; 
#chains in the Genus database with same CATH topology
 4DL1 C;  4KVL A;  4PNX A;  2NQX A;  3S4F A;  1IGZ A;  3QMO A;  3PY4 A;  1U67 A;  5FF1 A;  4C1M C;  3NTB A;  4FM5 A;  2O86 A;  3R5O A;  4LJJ A;  1EQH A;  3OGW A;  5FIW C;  4Y55 A;  3QL6 A;  3PGH A;  3F9P C;  4RS0 A;  5IKQ A;  2AYL A;  5KIR A;  5IKR A;  4IG5 A;  3QF1 A;  1D7W C;  3RR3 A;  3GCJ A;  4E1G A;  4HHS A;  3FNL A;  1DDX A;  5JW1 A;  1MYP C;  2PT3 A;  4QJQ A;  4RUT A;  3R5Q A;  5JVY A;  1D5L C;  3HS6 A;  3N8X A;  2OYE P;  3UBA A;  3ERI A;  4OTJ A;  1FE2 A;  4GM7 A;  4O1Z A;  4KSZ A;  2R5L A;  3SXV A;  4NJB A;  3TGY A;  3R4X A;  2OJV A;  3NIU A;  3GCL A;  3LN1 A;  3N8F A;  4OEK A;  3R55 A;  1Q4G A;  1PTH A;  5GLS A;  1PRH A;  2Z5Z A;  3ZS0 C;  6COX A;  1EBV A;  4RRY A;  1DIY A;  1CQE A;  4NT3 A;  3N8Y B;  4QYQ A;  3N8W B;  2QRB A;  3I6N A;  2E9E A;  2EFB A;  3KRK A;  1DNU C;  3BXI A;  3NT1 A;  4RRX A;  5GH0 A;  4HHR A;  2EHA A;  3FAQ A;  3N8Z A;  3N8V A;  1PGE A;  5F19 A;  3NYH A;  5B72 A;  4OTY A;  1IGX A;  5F1A A;  1CVU A;  5JVZ A;  2OYU P;  3QH0 A;  2IKC A;  4GN6 A;  4RRZ A;  1D2V C;  4Z0L A;  3N8Y A;  4KVJ A;  4M11 A;  4RRW A;  3GCK A;  3LN0 A;  3NTG A;  3N8W A;  3OLU A;  2IPS A;  2GJM A;  3MDL A;  3OLT A;  1HT5 A;  3HS7 A;  3ZS1 C;  5COX A;  1CXP C;  2PUM A;  4KVK A;  3TZI A;  1HT8 A;  3MQE A;  4MSF A;  5HPW A;  4M10 A;  3RKE A;  5IKV A;  1EQG A;  1MHL C;  3V6Q A;  5IKT A;  3KK6 A;  1DNW C;  2QPK A;  3GC1 A;  5FDQ A;  2QQT A;  3Q7D A;  3NAK A;  3Q9K A;  3HS5 A;  1PXX A;  4PH9 A;  4COX A;  3KRQ A;  4N7A A;  3ERH A;  1CX2 A; 
#chains in the Genus database with same CATH homology
 4DL1 C;  4KVL A;  4PNX A;  2NQX A;  3S4F A;  1IGZ A;  3QMO A;  3PY4 A;  1U67 A;  5FF1 A;  4C1M C;  3NTB A;  4FM5 A;  2O86 A;  3R5O A;  4LJJ A;  1EQH A;  3OGW A;  5FIW C;  4Y55 A;  3QL6 A;  3PGH A;  3F9P C;  4RS0 A;  5IKQ A;  2AYL A;  5KIR A;  5IKR A;  4IG5 A;  3QF1 A;  1D7W C;  3RR3 A;  3GCJ A;  4E1G A;  4HHS A;  3FNL A;  1DDX A;  5JW1 A;  1MYP C;  2PT3 A;  4QJQ A;  4RUT A;  3R5Q A;  5JVY A;  1D5L C;  3HS6 A;  3N8X A;  2OYE P;  3UBA A;  3ERI A;  4OTJ A;  1FE2 A;  4GM7 A;  4O1Z A;  4KSZ A;  2R5L A;  3SXV A;  4NJB A;  3TGY A;  3R4X A;  2OJV A;  3NIU A;  3GCL A;  3LN1 A;  3N8F A;  4OEK A;  3R55 A;  1Q4G A;  1PTH A;  5GLS A;  1PRH A;  2Z5Z A;  3ZS0 C;  6COX A;  1EBV A;  4RRY A;  1DIY A;  1CQE A;  4NT3 A;  3N8Y B;  4QYQ A;  3N8W B;  2QRB A;  3I6N A;  2E9E A;  2EFB A;  3KRK A;  1DNU C;  3BXI A;  3NT1 A;  4RRX A;  5GH0 A;  4HHR A;  2EHA A;  3FAQ A;  3N8Z A;  3N8V A;  1PGE A;  5F19 A;  3NYH A;  5B72 A;  4OTY A;  1IGX A;  5F1A A;  1CVU A;  5JVZ A;  2OYU P;  3QH0 A;  2IKC A;  4GN6 A;  4RRZ A;  1D2V C;  4Z0L A;  3N8Y A;  4KVJ A;  4M11 A;  4RRW A;  3GCK A;  3LN0 A;  3NTG A;  3N8W A;  3OLU A;  2IPS A;  2GJM A;  3MDL A;  3OLT A;  1HT5 A;  3HS7 A;  3ZS1 C;  5COX A;  1CXP C;  2PUM A;  4KVK A;  3TZI A;  1HT8 A;  3MQE A;  4MSF A;  5HPW A;  4M10 A;  3RKE A;  5IKV A;  1EQG A;  1MHL C;  3V6Q A;  5IKT A;  3KK6 A;  1DNW C;  2QPK A;  3GC1 A;  5FDQ A;  2QQT A;  3Q7D A;  3NAK A;  3Q9K A;  3HS5 A;  1PXX A;  4PH9 A;  4COX A;  3KRQ A;  4N7A A;  3ERH A;  1CX2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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