4HILA

1.25a resolution structure of rat type b cytochrome b5
Total Genus 26
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
85
structure length
85
Chain Sequence
PAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Electron transport
molecule keywords Cytochrome b5 type B
publication title 1.25A Resolution Structure of Rat Type B Cytochrome b5
rcsb
source organism Rattus norvegicus
total genus 26
structure length 85
sequence length 85
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 4hilA00
1CXYA 1I8CA 1U9MA 2I89A 3X32A 1DO9A 1JEXA 1B5MA 1SOXA 1J0QA 1AQAA 1MNYA 3OZZB 1I5UA 1LCOA 1ES1A 1AXXA 2AXXA 1HKOA 1F04A 1M59A 1BFXA 1LQXA 1LTDA 1M2MA 1J03A 2KEOA 2IBJA 2M33A 1EUEA 3X33A 1B5AA 1IEUA 3X34A 1B5BA 1SH4A 3LF5A 3NERA 3KS0A 1MJ4A 1AWPA 1AW3A 2I96A 3X35A 1U9UA 1ICCA 1IETA 1LJ0A 1KBIA 1M2IA 1I87A 1EHBA 1X3XA 1LDCA 4B8NA 4HINA 1FCBA 1CYOA 1F03A 1LR6A 2OZ0A 3MUSA 1NX7A 4X8YA 4HILA 1IB7A 1T0GA 1M20A 1BLVA
chains in the Genus database with same CATH superfamily
1CXYA 1I8CA 1U9MA 2I89A 3X32A 1DO9A 1JEXA 1B5MA 1SOXA 1J0QA 1AQAA 1MNYA 3OZZB 1I5UA 1LCOA 1ES1A 1AXXA 2AXXA 1HKOA 1F04A 1M59A 1BFXA 1LQXA 1LTDA 1M2MA 1J03A 2KEOA 2IBJA 2M33A 1EUEA 3X33A 1B5AA 1IEUA 3X34A 1B5BA 1SH4A 3LF5A 3NERA 3KS0A 1MJ4A 1AWPA 1AW3A 2I96A 3X35A 1U9UA 1ICCA 1IETA 1LJ0A 1KBIA 1M2IA 1I87A 1EHBA 1X3XA 1LDCA 4B8NA 4HINA 1FCBA 1CYOA 1F03A 1LR6A 2OZ0A 3MUSA 1NX7A 4X8YA 4HILA 1IB7A 1T0GA 1M20A 1BLVA
chains in the Genus database with same CATH topology
1CXYA 1I8CA 1U9MA 2I89A 3X32A 1DO9A 1JEXA 1B5MA 1SOXA 1J0QA 1AQAA 1MNYA 3OZZB 1I5UA 1LCOA 1ES1A 1AXXA 2AXXA 1HKOA 1F04A 1M59A 1BFXA 1LQXA 1LTDA 1M2MA 1J03A 2KEOA 2IBJA 2M33A 1EUEA 3X33A 1B5AA 1IEUA 3X34A 1B5BA 1SH4A 3LF5A 3NERA 3KS0A 1MJ4A 1AWPA 1AW3A 2I96A 3X35A 1U9UA 1ICCA 1IETA 1LJ0A 1KBIA 1M2IA 1I87A 1EHBA 1X3XA 1LDCA 4B8NA 4HINA 1FCBA 1CYOA 1F03A 1LR6A 2OZ0A 3MUSA 1NX7A 4X8YA 4HILA 1IB7A 1T0GA 1M20A 1BLVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CXY A;  1I8C A;  1U9M A;  2I89 A;  3X32 A;  1DO9 A;  1JEX A;  1B5M A;  1SOX A;  1J0Q A;  1AQA A;  1MNY A;  3OZZ B;  1I5U A;  1LCO A;  1ES1 A;  1AXX A;  2AXX A;  1HKO A;  1F04 A;  1M59 A;  1BFX A;  1LQX A;  1LTD A;  1M2M A;  1J03 A;  2KEO A;  2IBJ A;  2M33 A;  1EUE A;  3X33 A;  1B5A A;  1IEU A;  3X34 A;  1B5B A;  1SH4 A;  3LF5 A;  3NER A;  3KS0 A;  1MJ4 A;  1AWP A;  1AW3 A;  2I96 A;  3X35 A;  1U9U A;  1ICC A;  1IET A;  1LJ0 A;  1KBI A;  1M2I A;  1I87 A;  1EHB A;  1X3X A;  1LDC A;  4B8N A;  4HIN A;  1FCB A;  1CYO A;  1F03 A;  1LR6 A;  2OZ0 A;  3MUS A;  1NX7 A;  4X8Y A;  4HIL A;  1IB7 A;  1T0G A;  1M20 A;  1BLV A; 
#chains in the Genus database with same CATH topology
 1CXY A;  1I8C A;  1U9M A;  2I89 A;  3X32 A;  1DO9 A;  1JEX A;  1B5M A;  1SOX A;  1J0Q A;  1AQA A;  1MNY A;  3OZZ B;  1I5U A;  1LCO A;  1ES1 A;  1AXX A;  2AXX A;  1HKO A;  1F04 A;  1M59 A;  1BFX A;  1LQX A;  1LTD A;  1M2M A;  1J03 A;  2KEO A;  2IBJ A;  2M33 A;  1EUE A;  3X33 A;  1B5A A;  1IEU A;  3X34 A;  1B5B A;  1SH4 A;  3LF5 A;  3NER A;  3KS0 A;  1MJ4 A;  1AWP A;  1AW3 A;  2I96 A;  3X35 A;  1U9U A;  1ICC A;  1IET A;  1LJ0 A;  1KBI A;  1M2I A;  1I87 A;  1EHB A;  1X3X A;  1LDC A;  4B8N A;  4HIN A;  1FCB A;  1CYO A;  1F03 A;  1LR6 A;  2OZ0 A;  3MUS A;  1NX7 A;  4X8Y A;  4HIL A;  1IB7 A;  1T0G A;  1M20 A;  1BLV A; 
#chains in the Genus database with same CATH homology
 1CXY A;  1I8C A;  1U9M A;  2I89 A;  3X32 A;  1DO9 A;  1JEX A;  1B5M A;  1SOX A;  1J0Q A;  1AQA A;  1MNY A;  3OZZ B;  1I5U A;  1LCO A;  1ES1 A;  1AXX A;  2AXX A;  1HKO A;  1F04 A;  1M59 A;  1BFX A;  1LQX A;  1LTD A;  1M2M A;  1J03 A;  2KEO A;  2IBJ A;  2M33 A;  1EUE A;  3X33 A;  1B5A A;  1IEU A;  3X34 A;  1B5B A;  1SH4 A;  3LF5 A;  3NER A;  3KS0 A;  1MJ4 A;  1AWP A;  1AW3 A;  2I96 A;  3X35 A;  1U9U A;  1ICC A;  1IET A;  1LJ0 A;  1KBI A;  1M2I A;  1I87 A;  1EHB A;  1X3X A;  1LDC A;  4B8N A;  4HIN A;  1FCB A;  1CYO A;  1F03 A;  1LR6 A;  2OZ0 A;  3MUS A;  1NX7 A;  4X8Y A;  4HIL A;  1IB7 A;  1T0G A;  1M20 A;  1BLV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...