4HINA

2.4a resolution structure of bovine cytochrome b5 (s71l)
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
81
structure length
81
Chain Sequence
VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELLKTFIIGELHPDDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title 2.4A Resolution Structure of Bovine Cytochrome b5 (S71L)
rcsb
molecule tags Electron transport
source organism Bos taurus
molecule keywords Cytochrome b5
total genus 22
structure length 81
sequence length 81
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 4hinA00
2OZ0A 1EUEA 1MNYA 1AWPA 1LDCA 1M2MA 1NX7A 1U9MA 3LF5A 3NERA 1U9UA 2I96A 1IB7A 1BFXA 1M20A 1IEUA 1AW3A 1AQAA 1LCOA 2AXXA 1B5AA 1AXXA 3X33A 1DO9A 1HKOA 3X32A 1LTDA 1I8CA 3X35A 1KBIA 1M2IA 3KS0A 1EHBA 1T0GA 1FCBA 1LR6A 3OZZB 4HILA 1X3XA 1LJ0A 4X8YA 1CYOA 1SH4A 1F03A 1JEXA 1M59A 1CXYA 1LQXA 2IBJA 1I87A 1BLVA 1SOXA 2KEOA 1J0QA 3MUSA 4B8NA 1F04A 1I5UA 1IETA 2M33A 1B5BA 1ICCA 2I89A 1J03A 1MJ4A 4HINA 3X34A 1ES1A 1B5MA
chains in the Genus database with same CATH superfamily
2OZ0A 1EUEA 1MNYA 1AWPA 1LDCA 1M2MA 1NX7A 1U9MA 3LF5A 3NERA 1U9UA 2I96A 1IB7A 1BFXA 1M20A 1IEUA 1AW3A 1AQAA 1LCOA 2AXXA 1B5AA 1AXXA 3X33A 1DO9A 1HKOA 3X32A 1LTDA 1I8CA 3X35A 1KBIA 1M2IA 3KS0A 1EHBA 1T0GA 1FCBA 1LR6A 3OZZB 4HILA 1X3XA 1LJ0A 4X8YA 1CYOA 1SH4A 1F03A 1JEXA 1M59A 1CXYA 1LQXA 2IBJA 1I87A 1BLVA 1SOXA 2KEOA 1J0QA 3MUSA 4B8NA 1F04A 1I5UA 1IETA 2M33A 1B5BA 1ICCA 2I89A 1J03A 1MJ4A 4HINA 3X34A 1ES1A 1B5MA
chains in the Genus database with same CATH topology
2OZ0A 1EUEA 1MNYA 1AWPA 1LDCA 1M2MA 1NX7A 1U9MA 3LF5A 3NERA 1U9UA 2I96A 1IB7A 1BFXA 1M20A 1IEUA 1AW3A 1AQAA 1LCOA 2AXXA 1B5AA 1AXXA 3X33A 1DO9A 1HKOA 3X32A 1LTDA 1I8CA 3X35A 1KBIA 1M2IA 3KS0A 1EHBA 1T0GA 1FCBA 1LR6A 3OZZB 4HILA 1X3XA 1LJ0A 4X8YA 1CYOA 1SH4A 1F03A 1JEXA 1M59A 1CXYA 1LQXA 2IBJA 1I87A 1BLVA 1SOXA 2KEOA 1J0QA 3MUSA 4B8NA 1F04A 1I5UA 1IETA 2M33A 1B5BA 1ICCA 2I89A 1J03A 1MJ4A 4HINA 3X34A 1ES1A 1B5MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZ0 A;  1EUE A;  1MNY A;  1AWP A;  1LDC A;  1M2M A;  1NX7 A;  1U9M A;  3LF5 A;  3NER A;  1U9U A;  2I96 A;  1IB7 A;  1BFX A;  1M20 A;  1IEU A;  1AW3 A;  1AQA A;  1LCO A;  2AXX A;  1B5A A;  1AXX A;  3X33 A;  1DO9 A;  1HKO A;  3X32 A;  1LTD A;  1I8C A;  3X35 A;  1KBI A;  1M2I A;  3KS0 A;  1EHB A;  1T0G A;  1FCB A;  1LR6 A;  3OZZ B;  4HIL A;  1X3X A;  1LJ0 A;  4X8Y A;  1CYO A;  1SH4 A;  1F03 A;  1JEX A;  1M59 A;  1CXY A;  1LQX A;  2IBJ A;  1I87 A;  1BLV A;  1SOX A;  2KEO A;  1J0Q A;  3MUS A;  4B8N A;  1F04 A;  1I5U A;  1IET A;  2M33 A;  1B5B A;  1ICC A;  2I89 A;  1J03 A;  1MJ4 A;  4HIN A;  3X34 A;  1ES1 A;  1B5M A; 
#chains in the Genus database with same CATH topology
 2OZ0 A;  1EUE A;  1MNY A;  1AWP A;  1LDC A;  1M2M A;  1NX7 A;  1U9M A;  3LF5 A;  3NER A;  1U9U A;  2I96 A;  1IB7 A;  1BFX A;  1M20 A;  1IEU A;  1AW3 A;  1AQA A;  1LCO A;  2AXX A;  1B5A A;  1AXX A;  3X33 A;  1DO9 A;  1HKO A;  3X32 A;  1LTD A;  1I8C A;  3X35 A;  1KBI A;  1M2I A;  3KS0 A;  1EHB A;  1T0G A;  1FCB A;  1LR6 A;  3OZZ B;  4HIL A;  1X3X A;  1LJ0 A;  4X8Y A;  1CYO A;  1SH4 A;  1F03 A;  1JEX A;  1M59 A;  1CXY A;  1LQX A;  2IBJ A;  1I87 A;  1BLV A;  1SOX A;  2KEO A;  1J0Q A;  3MUS A;  4B8N A;  1F04 A;  1I5U A;  1IET A;  2M33 A;  1B5B A;  1ICC A;  2I89 A;  1J03 A;  1MJ4 A;  4HIN A;  3X34 A;  1ES1 A;  1B5M A; 
#chains in the Genus database with same CATH homology
 2OZ0 A;  1EUE A;  1MNY A;  1AWP A;  1LDC A;  1M2M A;  1NX7 A;  1U9M A;  3LF5 A;  3NER A;  1U9U A;  2I96 A;  1IB7 A;  1BFX A;  1M20 A;  1IEU A;  1AW3 A;  1AQA A;  1LCO A;  2AXX A;  1B5A A;  1AXX A;  3X33 A;  1DO9 A;  1HKO A;  3X32 A;  1LTD A;  1I8C A;  3X35 A;  1KBI A;  1M2I A;  3KS0 A;  1EHB A;  1T0G A;  1FCB A;  1LR6 A;  3OZZ B;  4HIL A;  1X3X A;  1LJ0 A;  4X8Y A;  1CYO A;  1SH4 A;  1F03 A;  1JEX A;  1M59 A;  1CXY A;  1LQX A;  2IBJ A;  1I87 A;  1BLV A;  1SOX A;  2KEO A;  1J0Q A;  3MUS A;  4B8N A;  1F04 A;  1I5U A;  1IET A;  2M33 A;  1B5B A;  1ICC A;  2I89 A;  1J03 A;  1MJ4 A;  4HIN A;  3X34 A;  1ES1 A;  1B5M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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