4HJLA

Naphthalene 1,2-dioxygenase bound to 1-chloronaphthalene
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Naphthalene 1,2-Dioxygenase bound to 1-chloronaphthalene
rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 160
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hjlA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hjlA01
2HMOA 1UUWA 3VMGD 1O7HA 4HM8A 3VMID 1SQQE 4HM3A 4NB9D 4U3FE 4AAYB 1NTKE 4AIVA 2BCCE 4PD4E 4P1CH 3GL0A 1Z01A 4NBGA 2QJYC 1NTZE 1BE3E 1PPJE 4HM7A 4HM0A 5KKZC 2HMNA 4QCKA 3L73E 1NU1E 2GBXA 3VMIA 2XRXA 2CKFA 4NB9A 1RFSA 3GCEA 3BCCE 3L75E 3GOBA 3GKEA 4QDDA 3GCFA 3GZXA 1EZVE 1L0NE 3H1JE 3H1LE 2GBWA 5AEUA 4EMJB 4NBAA 3H1IE 4HM2A 1FQTA 2BMOA 3AZCA 2QPZA 4HJLA 3VMHD 4NBBD 2HMJA 4HM6A 2HMKA 1SQPE 1L0LE 1VF5D 3H1HE 1ZRTE 3TGUE 2FYUE 1O7NA 1ULJA 1P84E 4NBFD 4NBCA 1O7GA 2DE7D 2DE5D 2DE6D 2YFIA 3DQYA 3L71E 4QURA 3H1KE 2HMLA 2NWFA 4NBAD 3L74E 1KYOE 2B1XA 3EQQA 3GL2A 2NVGA 4QUQA 1SQVE 3GTSA 4NB8D 1Z02A 2XSOA 3GZYA 3N0QA 2ZYLA 3GKQA 3EN1A 1BCCE 4PV1D 4NBHD 2NUMA 5AEWA 2BMQA 1NYKA 2BMRA 2B24A 1SQXE 3GTEA 2IBZE 4NB8A 2YFLA 2YVJB 1O7WA 4NBDA 2YIUC 2DE6A 2DE5A 1WQLA 2Q3WA 4H13D 1SQBE 2NVEA 4NBGD 2XR8A 1G8KB 4HM5A 1WW9A 4QUPA 2ZT9D 1VCKA 2JZAA 2FYNC 4NBDD 3VCPA 4NBED 5BOKA 4NBHA 4HM1A 1NDOA 4H44D 1VM9A 1SJGA 2E74D 1RIEA 2D2CD 1NTME 4NBEA 2HMMA 4HM4A 3C0DA 1Q90C 2E4PA 2YFJA 3D89A 3FOUA 5CXMA 5KLVE 1JM1A 4HKVA 5HL4A 1EG9A 2A06E 2NUKA 1KB9E 4QDFA 1G8JB 3CWBE 3VCAA 4H0LD 3VMGA 4NBBA 1PP9E 2QJPC 2QJKC 2E75D 4P1BH 2XSHA 3L72E 3GB4A 1ULIA 4NBCD 4NBFA 4QDFB 3CX5E 2DE7A 1UUVA 2NVFA 2JO6A 1O7PA 3CXHE 3VMHA 4QDCA 5KLIC 4OGQD 2I7FA 2E4QA 1Z03A 3L70E 2E76D 1O7MA
chains in the Genus database with same CATH superfamily
2HMOA 1UUWA 3VMGD 1O7HA 4HM8A 3VMID 1SQQE 4HM3A 4NB9D 4U3FE 4AAYB 1NTKE 4AIVA 2BCCE 4PD4E 4P1CH 3GL0A 1Z01A 4NBGA 2QJYC 1NTZE 1BE3E 1PPJE 4HM7A 4HM0A 5KKZC 2HMNA 4QCKA 3L73E 1NU1E 2GBXA 3VMIA 2XRXA 2CKFA 4NB9A 1RFSA 3GCEA 3BCCE 3L75E 3GOBA 3GKEA 4QDDA 3GCFA 3GZXA 1EZVE 1L0NE 3H1JE 3H1LE 2GBWA 5AEUA 4EMJB 4NBAA 3H1IE 4HM2A 1FQTA 2BMOA 3AZCA 2QPZA 4HJLA 3VMHD 4NBBD 2HMJA 4HM6A 2HMKA 1SQPE 1L0LE 1VF5D 3H1HE 1ZRTE 3TGUE 2FYUE 1O7NA 1ULJA 1P84E 4NBFD 4NBCA 1O7GA 2DE7D 2DE5D 2DE6D 2YFIA 3DQYA 3L71E 4QURA 3H1KE 2HMLA 2NWFA 4NBAD 3L74E 1KYOE 2B1XA 3EQQA 3GL2A 2NVGA 4QUQA 1SQVE 3GTSA 4NB8D 1Z02A 2XSOA 3GZYA 3N0QA 2ZYLA 3GKQA 3EN1A 1BCCE 4PV1D 4NBHD 2NUMA 5AEWA 2BMQA 1NYKA 2BMRA 2B24A 1SQXE 3GTEA 2IBZE 4NB8A 2YFLA 2YVJB 1O7WA 4NBDA 2YIUC 2DE6A 2DE5A 1WQLA 2Q3WA 4H13D 1SQBE 2NVEA 4NBGD 2XR8A 1G8KB 4HM5A 1WW9A 4QUPA 2ZT9D 1VCKA 2JZAA 2FYNC 4NBDD 3VCPA 4NBED 5BOKA 4NBHA 4HM1A 1NDOA 4H44D 1VM9A 1SJGA 2E74D 1RIEA 2D2CD 1NTME 4NBEA 2HMMA 4HM4A 3C0DA 1Q90C 2E4PA 2YFJA 3D89A 3FOUA 5CXMA 5KLVE 1JM1A 4HKVA 5HL4A 1EG9A 2A06E 2NUKA 1KB9E 4QDFA 1G8JB 3CWBE 3VCAA 4H0LD 3VMGA 4NBBA 1PP9E 2QJPC 2QJKC 2E75D 4P1BH 2XSHA 3L72E 3GB4A 1ULIA 4NBCD 4NBFA 4QDFB 3CX5E 2DE7A 1UUVA 2NVFA 2JO6A 1O7PA 3CXHE 3VMHA 4QDCA 5KLIC 4OGQD 2I7FA 2E4QA 1Z03A 3L70E 2E76D 1O7MA
chains in the Genus database with same CATH topology
2HMOA 1UUWA 3VMGD 1O7HA 4HM8A 3VMID 1SQQE 4HM3A 4NB9D 4U3FE 4AAYB 1NTKE 4AIVA 2BCCE 4PD4E 4P1CH 3GL0A 1Z01A 4NBGA 2QJYC 1NTZE 1BE3E 1PPJE 4HM7A 4HM0A 5KKZC 2HMNA 4QCKA 3L73E 1NU1E 2GBXA 3VMIA 2XRXA 2CKFA 4NB9A 1RFSA 3GCEA 3BCCE 3L75E 3GOBA 3GKEA 4QDDA 3GCFA 3GZXA 1EZVE 1L0NE 3H1JE 3H1LE 2GBWA 5AEUA 4EMJB 4NBAA 3H1IE 4HM2A 1FQTA 2BMOA 3AZCA 2QPZA 4HJLA 3VMHD 4NBBD 2HMJA 4HM6A 2HMKA 1SQPE 1L0LE 1VF5D 3H1HE 1ZRTE 3TGUE 2FYUE 1O7NA 1ULJA 1P84E 4NBFD 4NBCA 1O7GA 2DE7D 2DE5D 2DE6D 2YFIA 3DQYA 3L71E 4QURA 3H1KE 2HMLA 2NWFA 4NBAD 3L74E 1KYOE 2B1XA 3EQQA 3GL2A 2NVGA 4QUQA 1SQVE 3GTSA 4NB8D 1Z02A 2XSOA 3GZYA 3N0QA 2ZYLA 3GKQA 3EN1A 1BCCE 4PV1D 4NBHD 2NUMA 5AEWA 2BMQA 1NYKA 2BMRA 2B24A 1SQXE 3GTEA 2IBZE 4NB8A 2YFLA 2YVJB 1O7WA 4NBDA 2YIUC 2DE6A 2DE5A 1WQLA 2Q3WA 4H13D 1SQBE 2NVEA 4NBGD 2XR8A 1G8KB 4HM5A 1WW9A 4QUPA 2ZT9D 1VCKA 2JZAA 2FYNC 4NBDD 3VCPA 4NBED 5BOKA 4NBHA 4HM1A 1NDOA 4H44D 1VM9A 1SJGA 2E74D 1RIEA 2D2CD 1NTME 4NBEA 2HMMA 4HM4A 3C0DA 1Q90C 2E4PA 2YFJA 3D89A 3FOUA 5CXMA 5KLVE 1JM1A 4HKVA 5HL4A 1EG9A 2A06E 2NUKA 1KB9E 4QDFA 1G8JB 3CWBE 3VCAA 4H0LD 3VMGA 4NBBA 1PP9E 2QJPC 2QJKC 2E75D 4P1BH 2XSHA 3L72E 3GB4A 1ULIA 4NBCD 4NBFA 4QDFB 3CX5E 2DE7A 1UUVA 2NVFA 2JO6A 1O7PA 3CXHE 3VMHA 4QDCA 5KLIC 4OGQD 2I7FA 2E4QA 1Z03A 3L70E 2E76D 1O7MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HMO A;  1UUW A;  3VMG D;  1O7H A;  4HM8 A;  3VMI D;  1SQQ E;  4HM3 A;  4NB9 D;  4U3F E;  4AAY B;  1NTK E;  4AIV A;  2BCC E;  4PD4 E;  4P1C H;  3GL0 A;  1Z01 A;  4NBG A;  2QJY C;  1NTZ E;  1BE3 E;  1PPJ E;  4HM7 A;  4HM0 A;  5KKZ C;  2HMN A;  4QCK A;  3L73 E;  1NU1 E;  2GBX A;  3VMI A;  2XRX A;  2CKF A;  4NB9 A;  1RFS A;  3GCE A;  3BCC E;  3L75 E;  3GOB A;  3GKE A;  4QDD A;  3GCF A;  3GZX A;  1EZV E;  1L0N E;  3H1J E;  3H1L E;  2GBW A;  5AEU A;  4EMJ B;  4NBA A;  3H1I E;  4HM2 A;  1FQT A;  2BMO A;  3AZC A;  2QPZ A;  4HJL A;  3VMH D;  4NBB D;  2HMJ A;  4HM6 A;  2HMK A;  1SQP E;  1L0L E;  1VF5 D;  3H1H E;  1ZRT E;  3TGU E;  2FYU E;  1O7N A;  1ULJ A;  1P84 E;  4NBF D;  4NBC A;  1O7G A;  2DE7 D;  2DE5 D;  2DE6 D;  2YFI A;  3DQY A;  3L71 E;  4QUR A;  3H1K E;  2HML A;  2NWF A;  4NBA D;  3L74 E;  1KYO E;  2B1X A;  3EQQ A;  3GL2 A;  2NVG A;  4QUQ A;  1SQV E;  3GTS A;  4NB8 D;  1Z02 A;  2XSO A;  3GZY A;  3N0Q A;  2ZYL A;  3GKQ A;  3EN1 A;  1BCC E;  4PV1 D;  4NBH D;  2NUM A;  5AEW A;  2BMQ A;  1NYK A;  2BMR A;  2B24 A;  1SQX E;  3GTE A;  2IBZ E;  4NB8 A;  2YFL A;  2YVJ B;  1O7W A;  4NBD A;  2YIU C;  2DE6 A;  2DE5 A;  1WQL A;  2Q3W A;  4H13 D;  1SQB E;  2NVE A;  4NBG D;  2XR8 A;  1G8K B;  4HM5 A;  1WW9 A;  4QUP A;  2ZT9 D;  1VCK A;  2JZA A;  2FYN C;  4NBD D;  3VCP A;  4NBE D;  5BOK A;  4NBH A;  4HM1 A;  1NDO A;  4H44 D;  1VM9 A;  1SJG A;  2E74 D;  1RIE A;  2D2C D;  1NTM E;  4NBE A;  2HMM A;  4HM4 A;  3C0D A;  1Q90 C;  2E4P A;  2YFJ A;  3D89 A;  3FOU A;  5CXM A;  5KLV E;  1JM1 A;  4HKV A;  5HL4 A;  1EG9 A;  2A06 E;  2NUK A;  1KB9 E;  4QDF A;  1G8J B;  3CWB E;  3VCA A;  4H0L D;  3VMG A;  4NBB A;  1PP9 E;  2QJP C;  2QJK C;  2E75 D;  4P1B H;  2XSH A;  3L72 E;  3GB4 A;  1ULI A;  4NBC D;  4NBF A;  4QDF B;  3CX5 E;  2DE7 A;  1UUV A;  2NVF A;  2JO6 A;  1O7P A;  3CXH E;  3VMH A;  4QDC A;  5KLI C;  4OGQ D;  2I7F A;  2E4Q A;  1Z03 A;  3L70 E;  2E76 D;  1O7M A; 
#chains in the Genus database with same CATH topology
 2HMO A;  1UUW A;  3VMG D;  1O7H A;  4HM8 A;  3VMI D;  1SQQ E;  4HM3 A;  4NB9 D;  4U3F E;  4AAY B;  1NTK E;  4AIV A;  2BCC E;  4PD4 E;  4P1C H;  3GL0 A;  1Z01 A;  4NBG A;  2QJY C;  1NTZ E;  1BE3 E;  1PPJ E;  4HM7 A;  4HM0 A;  5KKZ C;  2HMN A;  4QCK A;  3L73 E;  1NU1 E;  2GBX A;  3VMI A;  2XRX A;  2CKF A;  4NB9 A;  1RFS A;  3GCE A;  3BCC E;  3L75 E;  3GOB A;  3GKE A;  4QDD A;  3GCF A;  3GZX A;  1EZV E;  1L0N E;  3H1J E;  3H1L E;  2GBW A;  5AEU A;  4EMJ B;  4NBA A;  3H1I E;  4HM2 A;  1FQT A;  2BMO A;  3AZC A;  2QPZ A;  4HJL A;  3VMH D;  4NBB D;  2HMJ A;  4HM6 A;  2HMK A;  1SQP E;  1L0L E;  1VF5 D;  3H1H E;  1ZRT E;  3TGU E;  2FYU E;  1O7N A;  1ULJ A;  1P84 E;  4NBF D;  4NBC A;  1O7G A;  2DE7 D;  2DE5 D;  2DE6 D;  2YFI A;  3DQY A;  3L71 E;  4QUR A;  3H1K E;  2HML A;  2NWF A;  4NBA D;  3L74 E;  1KYO E;  2B1X A;  3EQQ A;  3GL2 A;  2NVG A;  4QUQ A;  1SQV E;  3GTS A;  4NB8 D;  1Z02 A;  2XSO A;  3GZY A;  3N0Q A;  2ZYL A;  3GKQ A;  3EN1 A;  1BCC E;  4PV1 D;  4NBH D;  2NUM A;  5AEW A;  2BMQ A;  1NYK A;  2BMR A;  2B24 A;  1SQX E;  3GTE A;  2IBZ E;  4NB8 A;  2YFL A;  2YVJ B;  1O7W A;  4NBD A;  2YIU C;  2DE6 A;  2DE5 A;  1WQL A;  2Q3W A;  4H13 D;  1SQB E;  2NVE A;  4NBG D;  2XR8 A;  1G8K B;  4HM5 A;  1WW9 A;  4QUP A;  2ZT9 D;  1VCK A;  2JZA A;  2FYN C;  4NBD D;  3VCP A;  4NBE D;  5BOK A;  4NBH A;  4HM1 A;  1NDO A;  4H44 D;  1VM9 A;  1SJG A;  2E74 D;  1RIE A;  2D2C D;  1NTM E;  4NBE A;  2HMM A;  4HM4 A;  3C0D A;  1Q90 C;  2E4P A;  2YFJ A;  3D89 A;  3FOU A;  5CXM A;  5KLV E;  1JM1 A;  4HKV A;  5HL4 A;  1EG9 A;  2A06 E;  2NUK A;  1KB9 E;  4QDF A;  1G8J B;  3CWB E;  3VCA A;  4H0L D;  3VMG A;  4NBB A;  1PP9 E;  2QJP C;  2QJK C;  2E75 D;  4P1B H;  2XSH A;  3L72 E;  3GB4 A;  1ULI A;  4NBC D;  4NBF A;  4QDF B;  3CX5 E;  2DE7 A;  1UUV A;  2NVF A;  2JO6 A;  1O7P A;  3CXH E;  3VMH A;  4QDC A;  5KLI C;  4OGQ D;  2I7F A;  2E4Q A;  1Z03 A;  3L70 E;  2E76 D;  1O7M A; 
#chains in the Genus database with same CATH homology
 2HMO A;  1UUW A;  3VMG D;  1O7H A;  4HM8 A;  3VMI D;  1SQQ E;  4HM3 A;  4NB9 D;  4U3F E;  4AAY B;  1NTK E;  4AIV A;  2BCC E;  4PD4 E;  4P1C H;  3GL0 A;  1Z01 A;  4NBG A;  2QJY C;  1NTZ E;  1BE3 E;  1PPJ E;  4HM7 A;  4HM0 A;  5KKZ C;  2HMN A;  4QCK A;  3L73 E;  1NU1 E;  2GBX A;  3VMI A;  2XRX A;  2CKF A;  4NB9 A;  1RFS A;  3GCE A;  3BCC E;  3L75 E;  3GOB A;  3GKE A;  4QDD A;  3GCF A;  3GZX A;  1EZV E;  1L0N E;  3H1J E;  3H1L E;  2GBW A;  5AEU A;  4EMJ B;  4NBA A;  3H1I E;  4HM2 A;  1FQT A;  2BMO A;  3AZC A;  2QPZ A;  4HJL A;  3VMH D;  4NBB D;  2HMJ A;  4HM6 A;  2HMK A;  1SQP E;  1L0L E;  1VF5 D;  3H1H E;  1ZRT E;  3TGU E;  2FYU E;  1O7N A;  1ULJ A;  1P84 E;  4NBF D;  4NBC A;  1O7G A;  2DE7 D;  2DE5 D;  2DE6 D;  2YFI A;  3DQY A;  3L71 E;  4QUR A;  3H1K E;  2HML A;  2NWF A;  4NBA D;  3L74 E;  1KYO E;  2B1X A;  3EQQ A;  3GL2 A;  2NVG A;  4QUQ A;  1SQV E;  3GTS A;  4NB8 D;  1Z02 A;  2XSO A;  3GZY A;  3N0Q A;  2ZYL A;  3GKQ A;  3EN1 A;  1BCC E;  4PV1 D;  4NBH D;  2NUM A;  5AEW A;  2BMQ A;  1NYK A;  2BMR A;  2B24 A;  1SQX E;  3GTE A;  2IBZ E;  4NB8 A;  2YFL A;  2YVJ B;  1O7W A;  4NBD A;  2YIU C;  2DE6 A;  2DE5 A;  1WQL A;  2Q3W A;  4H13 D;  1SQB E;  2NVE A;  4NBG D;  2XR8 A;  1G8K B;  4HM5 A;  1WW9 A;  4QUP A;  2ZT9 D;  1VCK A;  2JZA A;  2FYN C;  4NBD D;  3VCP A;  4NBE D;  5BOK A;  4NBH A;  4HM1 A;  1NDO A;  4H44 D;  1VM9 A;  1SJG A;  2E74 D;  1RIE A;  2D2C D;  1NTM E;  4NBE A;  2HMM A;  4HM4 A;  3C0D A;  1Q90 C;  2E4P A;  2YFJ A;  3D89 A;  3FOU A;  5CXM A;  5KLV E;  1JM1 A;  4HKV A;  5HL4 A;  1EG9 A;  2A06 E;  2NUK A;  1KB9 E;  4QDF A;  1G8J B;  3CWB E;  3VCA A;  4H0L D;  3VMG A;  4NBB A;  1PP9 E;  2QJP C;  2QJK C;  2E75 D;  4P1B H;  2XSH A;  3L72 E;  3GB4 A;  1ULI A;  4NBC D;  4NBF A;  4QDF B;  3CX5 E;  2DE7 A;  1UUV A;  2NVF A;  2JO6 A;  1O7P A;  3CXH E;  3VMH A;  4QDC A;  5KLI C;  4OGQ D;  2I7F A;  2E4Q A;  1Z03 A;  3L70 E;  2E76 D;  1O7M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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