4HM2A

Naphthalene 1,2-dioxygenase bound to ethylphenylsulfide
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to ethylphenylsulfide
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 161
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm2A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm2A01
4HM4A 1NTZE 2E75D 4H44D 1NTME 2HMLA 2NVFA 1KYOE 3GZYA 3C0DA 3GL0A 1VM9A 2YFLA 4NBHD 4NBAA 1SQPE 2JO6A 2ZYLA 4QDCA 4AAYB 2YFIA 1O7GA 1L0NE 1SJGA 2HMMA 4PV1D 5AEWA 1SQVE 1O7HA 2XR8A 4HM3A 3BCCE 2XRXA 4NBED 4NB9D 3H1LE 3GOBA 2B24A 3GCFA 1Z01A 1G8JB 2YVJB 4HM6A 2B1XA 4NBGA 3L72E 4NBCA 3CWBE 4HM2A 4NB8D 1JM1A 2BMQA 3GCEA 2QJPC 4HM1A 3VMHA 2FYNC 1RFSA 2E74D 4HKVA 2CKFA 2DE5D 4QCKA 5AEUA 2A06E 4HJLA 1O7MA 2GBWA 2QJYC 3VMGD 5HL4A 4AIVA 4NBHA 2DE6D 2NUKA 1VCKA 3H1JE 2I7FA 2HMOA 3GTSA 3VCAA 3CXHE 3H1HE 4HM8A 3L71E 2E4QA 1P84E 4U3FE 4QDFA 4NBBD 1SQBE 2ZT9D 3EQQA 3GKEA 2DE7D 1Q90C 1ULJA 4NB9A 1KB9E 2BMRA 4P1CH 5KKZC 1ULIA 1NDOA 2JZAA 3D89A 3DQYA 1FQTA 1O7WA 1ZRTE 4NB8A 4NBDA 1WQLA 4HM0A 2HMKA 2IBZE 3VCPA 2HMJA 2DE5A 1O7NA 3AZCA 5KLVE 4HM5A 1O7PA 4NBFD 1BE3E 2QJKC 1SQXE 1G8KB 2D2CD 4EMJB 4NBBA 4QDFB 3FOUA 3TGUE 2DE7A 4QDDA 4NBEA 3VMID 3GTEA 3L75E 2NUMA 4HM7A 4NBCD 2Q3WA 3GZXA 1VF5D 3EN1A 4QURA 1L0LE 1PPJE 3L70E 5CXMA 3CX5E 1RIEA 2YIUC 3L73E 1Z02A 2GBXA 4QUPA 3H1IE 1BCCE 3H1KE 4NBAD 3VMGA 1PP9E 2NVGA 2BMOA 2DE6A 2YFJA 3L74E 2FYUE 4H13D 4P1BH 2NVEA 1NU1E 4PD4E 4NBFA 4QUQA 1UUWA 2XSHA 1SQQE 3GL2A 1Z03A 2E4PA 1EZVE 4OGQD 2HMNA 1NTKE 3VMIA 4NBGD 1WW9A 4NBDD 3GKQA 3N0QA 4H0LD 2BCCE 2XSOA 5KLIC 1NYKA 3GB4A 1EG9A 2QPZA 1UUVA 2E76D 2NWFA 3VMHD 5BOKA
chains in the Genus database with same CATH superfamily
4HM4A 1NTZE 2E75D 4H44D 1NTME 2HMLA 2NVFA 1KYOE 3GZYA 3C0DA 3GL0A 1VM9A 2YFLA 4NBHD 4NBAA 1SQPE 2JO6A 2ZYLA 4QDCA 4AAYB 2YFIA 1O7GA 1L0NE 1SJGA 2HMMA 4PV1D 5AEWA 1SQVE 1O7HA 2XR8A 4HM3A 3BCCE 2XRXA 4NBED 4NB9D 3H1LE 3GOBA 2B24A 3GCFA 1Z01A 1G8JB 2YVJB 4HM6A 2B1XA 4NBGA 3L72E 4NBCA 3CWBE 4HM2A 4NB8D 1JM1A 2BMQA 3GCEA 2QJPC 4HM1A 3VMHA 2FYNC 1RFSA 2E74D 4HKVA 2CKFA 2DE5D 4QCKA 5AEUA 2A06E 4HJLA 1O7MA 2GBWA 2QJYC 3VMGD 5HL4A 4AIVA 4NBHA 2DE6D 2NUKA 1VCKA 3H1JE 2I7FA 2HMOA 3GTSA 3VCAA 3CXHE 3H1HE 4HM8A 3L71E 2E4QA 1P84E 4U3FE 4QDFA 4NBBD 1SQBE 2ZT9D 3EQQA 3GKEA 2DE7D 1Q90C 1ULJA 4NB9A 1KB9E 2BMRA 4P1CH 5KKZC 1ULIA 1NDOA 2JZAA 3D89A 3DQYA 1FQTA 1O7WA 1ZRTE 4NB8A 4NBDA 1WQLA 4HM0A 2HMKA 2IBZE 3VCPA 2HMJA 2DE5A 1O7NA 3AZCA 5KLVE 4HM5A 1O7PA 4NBFD 1BE3E 2QJKC 1SQXE 1G8KB 2D2CD 4EMJB 4NBBA 4QDFB 3FOUA 3TGUE 2DE7A 4QDDA 4NBEA 3VMID 3GTEA 3L75E 2NUMA 4HM7A 4NBCD 2Q3WA 3GZXA 1VF5D 3EN1A 4QURA 1L0LE 1PPJE 3L70E 5CXMA 3CX5E 1RIEA 2YIUC 3L73E 1Z02A 2GBXA 4QUPA 3H1IE 1BCCE 3H1KE 4NBAD 3VMGA 1PP9E 2NVGA 2BMOA 2DE6A 2YFJA 3L74E 2FYUE 4H13D 4P1BH 2NVEA 1NU1E 4PD4E 4NBFA 4QUQA 1UUWA 2XSHA 1SQQE 3GL2A 1Z03A 2E4PA 1EZVE 4OGQD 2HMNA 1NTKE 3VMIA 4NBGD 1WW9A 4NBDD 3GKQA 3N0QA 4H0LD 2BCCE 2XSOA 5KLIC 1NYKA 3GB4A 1EG9A 2QPZA 1UUVA 2E76D 2NWFA 3VMHD 5BOKA
chains in the Genus database with same CATH topology
4HM4A 1NTZE 2E75D 4H44D 1NTME 2HMLA 2NVFA 1KYOE 3GZYA 3C0DA 3GL0A 1VM9A 2YFLA 4NBHD 4NBAA 1SQPE 2JO6A 2ZYLA 4QDCA 4AAYB 2YFIA 1O7GA 1L0NE 1SJGA 2HMMA 4PV1D 5AEWA 1SQVE 1O7HA 2XR8A 4HM3A 3BCCE 2XRXA 4NBED 4NB9D 3H1LE 3GOBA 2B24A 3GCFA 1Z01A 1G8JB 2YVJB 4HM6A 2B1XA 4NBGA 3L72E 4NBCA 3CWBE 4HM2A 4NB8D 1JM1A 2BMQA 3GCEA 2QJPC 4HM1A 3VMHA 2FYNC 1RFSA 2E74D 4HKVA 2CKFA 2DE5D 4QCKA 5AEUA 2A06E 4HJLA 1O7MA 2GBWA 2QJYC 3VMGD 5HL4A 4AIVA 4NBHA 2DE6D 2NUKA 1VCKA 3H1JE 2I7FA 2HMOA 3GTSA 3VCAA 3CXHE 3H1HE 4HM8A 3L71E 2E4QA 1P84E 4U3FE 4QDFA 4NBBD 1SQBE 2ZT9D 3EQQA 3GKEA 2DE7D 1Q90C 1ULJA 4NB9A 1KB9E 2BMRA 4P1CH 5KKZC 1ULIA 1NDOA 2JZAA 3D89A 3DQYA 1FQTA 1O7WA 1ZRTE 4NB8A 4NBDA 1WQLA 4HM0A 2HMKA 2IBZE 3VCPA 2HMJA 2DE5A 1O7NA 3AZCA 5KLVE 4HM5A 1O7PA 4NBFD 1BE3E 2QJKC 1SQXE 1G8KB 2D2CD 4EMJB 4NBBA 4QDFB 3FOUA 3TGUE 2DE7A 4QDDA 4NBEA 3VMID 3GTEA 3L75E 2NUMA 4HM7A 4NBCD 2Q3WA 3GZXA 1VF5D 3EN1A 4QURA 1L0LE 1PPJE 3L70E 5CXMA 3CX5E 1RIEA 2YIUC 3L73E 1Z02A 2GBXA 4QUPA 3H1IE 1BCCE 3H1KE 4NBAD 3VMGA 1PP9E 2NVGA 2BMOA 2DE6A 2YFJA 3L74E 2FYUE 4H13D 4P1BH 2NVEA 1NU1E 4PD4E 4NBFA 4QUQA 1UUWA 2XSHA 1SQQE 3GL2A 1Z03A 2E4PA 1EZVE 4OGQD 2HMNA 1NTKE 3VMIA 4NBGD 1WW9A 4NBDD 3GKQA 3N0QA 4H0LD 2BCCE 2XSOA 5KLIC 1NYKA 3GB4A 1EG9A 2QPZA 1UUVA 2E76D 2NWFA 3VMHD 5BOKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HM4 A;  1NTZ E;  2E75 D;  4H44 D;  1NTM E;  2HML A;  2NVF A;  1KYO E;  3GZY A;  3C0D A;  3GL0 A;  1VM9 A;  2YFL A;  4NBH D;  4NBA A;  1SQP E;  2JO6 A;  2ZYL A;  4QDC A;  4AAY B;  2YFI A;  1O7G A;  1L0N E;  1SJG A;  2HMM A;  4PV1 D;  5AEW A;  1SQV E;  1O7H A;  2XR8 A;  4HM3 A;  3BCC E;  2XRX A;  4NBE D;  4NB9 D;  3H1L E;  3GOB A;  2B24 A;  3GCF A;  1Z01 A;  1G8J B;  2YVJ B;  4HM6 A;  2B1X A;  4NBG A;  3L72 E;  4NBC A;  3CWB E;  4HM2 A;  4NB8 D;  1JM1 A;  2BMQ A;  3GCE A;  2QJP C;  4HM1 A;  3VMH A;  2FYN C;  1RFS A;  2E74 D;  4HKV A;  2CKF A;  2DE5 D;  4QCK A;  5AEU A;  2A06 E;  4HJL A;  1O7M A;  2GBW A;  2QJY C;  3VMG D;  5HL4 A;  4AIV A;  4NBH A;  2DE6 D;  2NUK A;  1VCK A;  3H1J E;  2I7F A;  2HMO A;  3GTS A;  3VCA A;  3CXH E;  3H1H E;  4HM8 A;  3L71 E;  2E4Q A;  1P84 E;  4U3F E;  4QDF A;  4NBB D;  1SQB E;  2ZT9 D;  3EQQ A;  3GKE A;  2DE7 D;  1Q90 C;  1ULJ A;  4NB9 A;  1KB9 E;  2BMR A;  4P1C H;  5KKZ C;  1ULI A;  1NDO A;  2JZA A;  3D89 A;  3DQY A;  1FQT A;  1O7W A;  1ZRT E;  4NB8 A;  4NBD A;  1WQL A;  4HM0 A;  2HMK A;  2IBZ E;  3VCP A;  2HMJ A;  2DE5 A;  1O7N A;  3AZC A;  5KLV E;  4HM5 A;  1O7P A;  4NBF D;  1BE3 E;  2QJK C;  1SQX E;  1G8K B;  2D2C D;  4EMJ B;  4NBB A;  4QDF B;  3FOU A;  3TGU E;  2DE7 A;  4QDD A;  4NBE A;  3VMI D;  3GTE A;  3L75 E;  2NUM A;  4HM7 A;  4NBC D;  2Q3W A;  3GZX A;  1VF5 D;  3EN1 A;  4QUR A;  1L0L E;  1PPJ E;  3L70 E;  5CXM A;  3CX5 E;  1RIE A;  2YIU C;  3L73 E;  1Z02 A;  2GBX A;  4QUP A;  3H1I E;  1BCC E;  3H1K E;  4NBA D;  3VMG A;  1PP9 E;  2NVG A;  2BMO A;  2DE6 A;  2YFJ A;  3L74 E;  2FYU E;  4H13 D;  4P1B H;  2NVE A;  1NU1 E;  4PD4 E;  4NBF A;  4QUQ A;  1UUW A;  2XSH A;  1SQQ E;  3GL2 A;  1Z03 A;  2E4P A;  1EZV E;  4OGQ D;  2HMN A;  1NTK E;  3VMI A;  4NBG D;  1WW9 A;  4NBD D;  3GKQ A;  3N0Q A;  4H0L D;  2BCC E;  2XSO A;  5KLI C;  1NYK A;  3GB4 A;  1EG9 A;  2QPZ A;  1UUV A;  2E76 D;  2NWF A;  3VMH D;  5BOK A; 
#chains in the Genus database with same CATH topology
 4HM4 A;  1NTZ E;  2E75 D;  4H44 D;  1NTM E;  2HML A;  2NVF A;  1KYO E;  3GZY A;  3C0D A;  3GL0 A;  1VM9 A;  2YFL A;  4NBH D;  4NBA A;  1SQP E;  2JO6 A;  2ZYL A;  4QDC A;  4AAY B;  2YFI A;  1O7G A;  1L0N E;  1SJG A;  2HMM A;  4PV1 D;  5AEW A;  1SQV E;  1O7H A;  2XR8 A;  4HM3 A;  3BCC E;  2XRX A;  4NBE D;  4NB9 D;  3H1L E;  3GOB A;  2B24 A;  3GCF A;  1Z01 A;  1G8J B;  2YVJ B;  4HM6 A;  2B1X A;  4NBG A;  3L72 E;  4NBC A;  3CWB E;  4HM2 A;  4NB8 D;  1JM1 A;  2BMQ A;  3GCE A;  2QJP C;  4HM1 A;  3VMH A;  2FYN C;  1RFS A;  2E74 D;  4HKV A;  2CKF A;  2DE5 D;  4QCK A;  5AEU A;  2A06 E;  4HJL A;  1O7M A;  2GBW A;  2QJY C;  3VMG D;  5HL4 A;  4AIV A;  4NBH A;  2DE6 D;  2NUK A;  1VCK A;  3H1J E;  2I7F A;  2HMO A;  3GTS A;  3VCA A;  3CXH E;  3H1H E;  4HM8 A;  3L71 E;  2E4Q A;  1P84 E;  4U3F E;  4QDF A;  4NBB D;  1SQB E;  2ZT9 D;  3EQQ A;  3GKE A;  2DE7 D;  1Q90 C;  1ULJ A;  4NB9 A;  1KB9 E;  2BMR A;  4P1C H;  5KKZ C;  1ULI A;  1NDO A;  2JZA A;  3D89 A;  3DQY A;  1FQT A;  1O7W A;  1ZRT E;  4NB8 A;  4NBD A;  1WQL A;  4HM0 A;  2HMK A;  2IBZ E;  3VCP A;  2HMJ A;  2DE5 A;  1O7N A;  3AZC A;  5KLV E;  4HM5 A;  1O7P A;  4NBF D;  1BE3 E;  2QJK C;  1SQX E;  1G8K B;  2D2C D;  4EMJ B;  4NBB A;  4QDF B;  3FOU A;  3TGU E;  2DE7 A;  4QDD A;  4NBE A;  3VMI D;  3GTE A;  3L75 E;  2NUM A;  4HM7 A;  4NBC D;  2Q3W A;  3GZX A;  1VF5 D;  3EN1 A;  4QUR A;  1L0L E;  1PPJ E;  3L70 E;  5CXM A;  3CX5 E;  1RIE A;  2YIU C;  3L73 E;  1Z02 A;  2GBX A;  4QUP A;  3H1I E;  1BCC E;  3H1K E;  4NBA D;  3VMG A;  1PP9 E;  2NVG A;  2BMO A;  2DE6 A;  2YFJ A;  3L74 E;  2FYU E;  4H13 D;  4P1B H;  2NVE A;  1NU1 E;  4PD4 E;  4NBF A;  4QUQ A;  1UUW A;  2XSH A;  1SQQ E;  3GL2 A;  1Z03 A;  2E4P A;  1EZV E;  4OGQ D;  2HMN A;  1NTK E;  3VMI A;  4NBG D;  1WW9 A;  4NBD D;  3GKQ A;  3N0Q A;  4H0L D;  2BCC E;  2XSO A;  5KLI C;  1NYK A;  3GB4 A;  1EG9 A;  2QPZ A;  1UUV A;  2E76 D;  2NWF A;  3VMH D;  5BOK A; 
#chains in the Genus database with same CATH homology
 4HM4 A;  1NTZ E;  2E75 D;  4H44 D;  1NTM E;  2HML A;  2NVF A;  1KYO E;  3GZY A;  3C0D A;  3GL0 A;  1VM9 A;  2YFL A;  4NBH D;  4NBA A;  1SQP E;  2JO6 A;  2ZYL A;  4QDC A;  4AAY B;  2YFI A;  1O7G A;  1L0N E;  1SJG A;  2HMM A;  4PV1 D;  5AEW A;  1SQV E;  1O7H A;  2XR8 A;  4HM3 A;  3BCC E;  2XRX A;  4NBE D;  4NB9 D;  3H1L E;  3GOB A;  2B24 A;  3GCF A;  1Z01 A;  1G8J B;  2YVJ B;  4HM6 A;  2B1X A;  4NBG A;  3L72 E;  4NBC A;  3CWB E;  4HM2 A;  4NB8 D;  1JM1 A;  2BMQ A;  3GCE A;  2QJP C;  4HM1 A;  3VMH A;  2FYN C;  1RFS A;  2E74 D;  4HKV A;  2CKF A;  2DE5 D;  4QCK A;  5AEU A;  2A06 E;  4HJL A;  1O7M A;  2GBW A;  2QJY C;  3VMG D;  5HL4 A;  4AIV A;  4NBH A;  2DE6 D;  2NUK A;  1VCK A;  3H1J E;  2I7F A;  2HMO A;  3GTS A;  3VCA A;  3CXH E;  3H1H E;  4HM8 A;  3L71 E;  2E4Q A;  1P84 E;  4U3F E;  4QDF A;  4NBB D;  1SQB E;  2ZT9 D;  3EQQ A;  3GKE A;  2DE7 D;  1Q90 C;  1ULJ A;  4NB9 A;  1KB9 E;  2BMR A;  4P1C H;  5KKZ C;  1ULI A;  1NDO A;  2JZA A;  3D89 A;  3DQY A;  1FQT A;  1O7W A;  1ZRT E;  4NB8 A;  4NBD A;  1WQL A;  4HM0 A;  2HMK A;  2IBZ E;  3VCP A;  2HMJ A;  2DE5 A;  1O7N A;  3AZC A;  5KLV E;  4HM5 A;  1O7P A;  4NBF D;  1BE3 E;  2QJK C;  1SQX E;  1G8K B;  2D2C D;  4EMJ B;  4NBB A;  4QDF B;  3FOU A;  3TGU E;  2DE7 A;  4QDD A;  4NBE A;  3VMI D;  3GTE A;  3L75 E;  2NUM A;  4HM7 A;  4NBC D;  2Q3W A;  3GZX A;  1VF5 D;  3EN1 A;  4QUR A;  1L0L E;  1PPJ E;  3L70 E;  5CXM A;  3CX5 E;  1RIE A;  2YIU C;  3L73 E;  1Z02 A;  2GBX A;  4QUP A;  3H1I E;  1BCC E;  3H1K E;  4NBA D;  3VMG A;  1PP9 E;  2NVG A;  2BMO A;  2DE6 A;  2YFJ A;  3L74 E;  2FYU E;  4H13 D;  4P1B H;  2NVE A;  1NU1 E;  4PD4 E;  4NBF A;  4QUQ A;  1UUW A;  2XSH A;  1SQQ E;  3GL2 A;  1Z03 A;  2E4P A;  1EZV E;  4OGQ D;  2HMN A;  1NTK E;  3VMI A;  4NBG D;  1WW9 A;  4NBD D;  3GKQ A;  3N0Q A;  4H0L D;  2BCC E;  2XSO A;  5KLI C;  1NYK A;  3GB4 A;  1EG9 A;  2QPZ A;  1UUV A;  2E76 D;  2NWF A;  3VMH D;  5BOK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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