4HM2A

Naphthalene 1,2-dioxygenase bound to ethylphenylsulfide
Total Genus 161
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Naphthalene 1,2-Dioxygenase bound to ethylphenylsulfide
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 161
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm2A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm2A01
3N0QA 4QCKA 3GKQA 5BOKA 1O7WA 1EZVE 1O7PA 4QDCA 3CWBE 2JZAA 1L0LE 1NU1E 3GZYA 4QDDA 3VCPA 3H1IE 4AIVA 1WW9A 3VCAA 1G8JB 3GB4A 4NBDD 4NBED 3VMID 1NDOA 4PV1D 4NBHA 3GOBA 1ULIA 1G8KB 2YFLA 4QURA 1UUWA 1KYOE 2E4QA 5KLIC 4HM8A 2FYUE 3VMGD 2GBWA 2D2CD 4P1CH 4NBEA 2DE6D 2ZYLA 1NTKE 1PP9E 1PPJE 2HMKA 3VMIA 1FQTA 4NB9A 4NBBA 3GZXA 1SQXE 3L75E 4HM3A 5AEUA 3GCEA 4NBGD 2BCCE 1Z02A 3EQQA 2IBZE 2ZT9D 3GL0A 4OGQD 1NYKA 3L74E 2A06E 1O7NA 3H1KE 3TGUE 5KLVE 2YFJA 3L72E 3EN1A 2DE6A 3GCFA 4NBBD 4HM7A 4H0LD 2BMQA 1Q90C 4QUQA 1BE3E 4HM5A 4NB8D 2YFIA 3L73E 4HM0A 3L71E 2XR8A 1ULJA 3VMHD 2QPZA 4NBAA 1SJGA 2I7FA 4HM2A 4EMJB 2NVEA 4QDFB 2DE7D 2NWFA 2DE5A 1SQVE 4HM6A 4HM1A 4NB9D 4H44D 3VMGA 2B1XA 1BCCE 2YIUC 4PD4E 2HMJA 2HMNA 1JM1A 2HMLA 2CKFA 2HMOA 2XSOA 4HM4A 1ZRTE 5KKZC 4HKVA 2NUMA 3H1LE 2XSHA 4NBAD 1Z01A 4P1BH 4NBDA 4U3FE 2GBXA 2QJYC 4NBFA 2NUKA 1RFSA 4NBHD 1SQQE 3CXHE 4QDFA 2E76D 1O7HA 3GL2A 2HMMA 2NVFA 3BCCE 2QJPC 3L70E 3D89A 1O7MA 4NB8A 4QUPA 5AEWA 2BMRA 2YVJB 1L0NE 4HJLA 1O7GA 3FOUA 2E74D 1SQPE 1NTME 4NBGA 1UUVA 2DE5D 1KB9E 3AZCA 5CXMA 3VMHA 3CX5E 2QJKC 3GKEA 1P84E 5HL4A 1SQBE 4NBCA 2DE7A 1EG9A 3C0DA 2Q3WA 2B24A 1Z03A 1VM9A 2NVGA 4H13D 4NBFD 2E4PA 2JO6A 3H1JE 1VF5D 2FYNC 3GTEA 1WQLA 3DQYA 1VCKA 2XRXA 4NBCD 3H1HE 1NTZE 4AAYB 1RIEA 3GTSA 2BMOA 2E75D
chains in the Genus database with same CATH superfamily
3N0QA 4QCKA 3GKQA 5BOKA 1O7WA 1EZVE 1O7PA 4QDCA 3CWBE 2JZAA 1L0LE 1NU1E 3GZYA 4QDDA 3VCPA 3H1IE 4AIVA 1WW9A 3VCAA 1G8JB 3GB4A 4NBDD 4NBED 3VMID 1NDOA 4PV1D 4NBHA 3GOBA 1ULIA 1G8KB 2YFLA 4QURA 1UUWA 1KYOE 2E4QA 5KLIC 4HM8A 2FYUE 3VMGD 2GBWA 2D2CD 4P1CH 4NBEA 2DE6D 2ZYLA 1NTKE 1PP9E 1PPJE 2HMKA 3VMIA 1FQTA 4NB9A 4NBBA 3GZXA 1SQXE 3L75E 4HM3A 5AEUA 3GCEA 4NBGD 2BCCE 1Z02A 3EQQA 2IBZE 2ZT9D 3GL0A 4OGQD 1NYKA 3L74E 2A06E 1O7NA 3H1KE 3TGUE 5KLVE 2YFJA 3L72E 3EN1A 2DE6A 3GCFA 4NBBD 4HM7A 4H0LD 2BMQA 1Q90C 4QUQA 1BE3E 4HM5A 4NB8D 2YFIA 3L73E 4HM0A 3L71E 2XR8A 1ULJA 3VMHD 2QPZA 4NBAA 1SJGA 2I7FA 4HM2A 4EMJB 2NVEA 4QDFB 2DE7D 2NWFA 2DE5A 1SQVE 4HM6A 4HM1A 4NB9D 4H44D 3VMGA 2B1XA 1BCCE 2YIUC 4PD4E 2HMJA 2HMNA 1JM1A 2HMLA 2CKFA 2HMOA 2XSOA 4HM4A 1ZRTE 5KKZC 4HKVA 2NUMA 3H1LE 2XSHA 4NBAD 1Z01A 4P1BH 4NBDA 4U3FE 2GBXA 2QJYC 4NBFA 2NUKA 1RFSA 4NBHD 1SQQE 3CXHE 4QDFA 2E76D 1O7HA 3GL2A 2HMMA 2NVFA 3BCCE 2QJPC 3L70E 3D89A 1O7MA 4NB8A 4QUPA 5AEWA 2BMRA 2YVJB 1L0NE 4HJLA 1O7GA 3FOUA 2E74D 1SQPE 1NTME 4NBGA 1UUVA 2DE5D 1KB9E 3AZCA 5CXMA 3VMHA 3CX5E 2QJKC 3GKEA 1P84E 5HL4A 1SQBE 4NBCA 2DE7A 1EG9A 3C0DA 2Q3WA 2B24A 1Z03A 1VM9A 2NVGA 4H13D 4NBFD 2E4PA 2JO6A 3H1JE 1VF5D 2FYNC 3GTEA 1WQLA 3DQYA 1VCKA 2XRXA 4NBCD 3H1HE 1NTZE 4AAYB 1RIEA 3GTSA 2BMOA 2E75D
chains in the Genus database with same CATH topology
3N0QA 4QCKA 3GKQA 5BOKA 1O7WA 1EZVE 1O7PA 4QDCA 3CWBE 2JZAA 1L0LE 1NU1E 3GZYA 4QDDA 3VCPA 3H1IE 4AIVA 1WW9A 3VCAA 1G8JB 3GB4A 4NBDD 4NBED 3VMID 1NDOA 4PV1D 4NBHA 3GOBA 1ULIA 1G8KB 2YFLA 4QURA 1UUWA 1KYOE 2E4QA 5KLIC 4HM8A 2FYUE 3VMGD 2GBWA 2D2CD 4P1CH 4NBEA 2DE6D 2ZYLA 1NTKE 1PP9E 1PPJE 2HMKA 3VMIA 1FQTA 4NB9A 4NBBA 3GZXA 1SQXE 3L75E 4HM3A 5AEUA 3GCEA 4NBGD 2BCCE 1Z02A 3EQQA 2IBZE 2ZT9D 3GL0A 4OGQD 1NYKA 3L74E 2A06E 1O7NA 3H1KE 3TGUE 5KLVE 2YFJA 3L72E 3EN1A 2DE6A 3GCFA 4NBBD 4HM7A 4H0LD 2BMQA 1Q90C 4QUQA 1BE3E 4HM5A 4NB8D 2YFIA 3L73E 4HM0A 3L71E 2XR8A 1ULJA 3VMHD 2QPZA 4NBAA 1SJGA 2I7FA 4HM2A 4EMJB 2NVEA 4QDFB 2DE7D 2NWFA 2DE5A 1SQVE 4HM6A 4HM1A 4NB9D 4H44D 3VMGA 2B1XA 1BCCE 2YIUC 4PD4E 2HMJA 2HMNA 1JM1A 2HMLA 2CKFA 2HMOA 2XSOA 4HM4A 1ZRTE 5KKZC 4HKVA 2NUMA 3H1LE 2XSHA 4NBAD 1Z01A 4P1BH 4NBDA 4U3FE 2GBXA 2QJYC 4NBFA 2NUKA 1RFSA 4NBHD 1SQQE 3CXHE 4QDFA 2E76D 1O7HA 3GL2A 2HMMA 2NVFA 3BCCE 2QJPC 3L70E 3D89A 1O7MA 4NB8A 4QUPA 5AEWA 2BMRA 2YVJB 1L0NE 4HJLA 1O7GA 3FOUA 2E74D 1SQPE 1NTME 4NBGA 1UUVA 2DE5D 1KB9E 3AZCA 5CXMA 3VMHA 3CX5E 2QJKC 3GKEA 1P84E 5HL4A 1SQBE 4NBCA 2DE7A 1EG9A 3C0DA 2Q3WA 2B24A 1Z03A 1VM9A 2NVGA 4H13D 4NBFD 2E4PA 2JO6A 3H1JE 1VF5D 2FYNC 3GTEA 1WQLA 3DQYA 1VCKA 2XRXA 4NBCD 3H1HE 1NTZE 4AAYB 1RIEA 3GTSA 2BMOA 2E75D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N0Q A;  4QCK A;  3GKQ A;  5BOK A;  1O7W A;  1EZV E;  1O7P A;  4QDC A;  3CWB E;  2JZA A;  1L0L E;  1NU1 E;  3GZY A;  4QDD A;  3VCP A;  3H1I E;  4AIV A;  1WW9 A;  3VCA A;  1G8J B;  3GB4 A;  4NBD D;  4NBE D;  3VMI D;  1NDO A;  4PV1 D;  4NBH A;  3GOB A;  1ULI A;  1G8K B;  2YFL A;  4QUR A;  1UUW A;  1KYO E;  2E4Q A;  5KLI C;  4HM8 A;  2FYU E;  3VMG D;  2GBW A;  2D2C D;  4P1C H;  4NBE A;  2DE6 D;  2ZYL A;  1NTK E;  1PP9 E;  1PPJ E;  2HMK A;  3VMI A;  1FQT A;  4NB9 A;  4NBB A;  3GZX A;  1SQX E;  3L75 E;  4HM3 A;  5AEU A;  3GCE A;  4NBG D;  2BCC E;  1Z02 A;  3EQQ A;  2IBZ E;  2ZT9 D;  3GL0 A;  4OGQ D;  1NYK A;  3L74 E;  2A06 E;  1O7N A;  3H1K E;  3TGU E;  5KLV E;  2YFJ A;  3L72 E;  3EN1 A;  2DE6 A;  3GCF A;  4NBB D;  4HM7 A;  4H0L D;  2BMQ A;  1Q90 C;  4QUQ A;  1BE3 E;  4HM5 A;  4NB8 D;  2YFI A;  3L73 E;  4HM0 A;  3L71 E;  2XR8 A;  1ULJ A;  3VMH D;  2QPZ A;  4NBA A;  1SJG A;  2I7F A;  4HM2 A;  4EMJ B;  2NVE A;  4QDF B;  2DE7 D;  2NWF A;  2DE5 A;  1SQV E;  4HM6 A;  4HM1 A;  4NB9 D;  4H44 D;  3VMG A;  2B1X A;  1BCC E;  2YIU C;  4PD4 E;  2HMJ A;  2HMN A;  1JM1 A;  2HML A;  2CKF A;  2HMO A;  2XSO A;  4HM4 A;  1ZRT E;  5KKZ C;  4HKV A;  2NUM A;  3H1L E;  2XSH A;  4NBA D;  1Z01 A;  4P1B H;  4NBD A;  4U3F E;  2GBX A;  2QJY C;  4NBF A;  2NUK A;  1RFS A;  4NBH D;  1SQQ E;  3CXH E;  4QDF A;  2E76 D;  1O7H A;  3GL2 A;  2HMM A;  2NVF A;  3BCC E;  2QJP C;  3L70 E;  3D89 A;  1O7M A;  4NB8 A;  4QUP A;  5AEW A;  2BMR A;  2YVJ B;  1L0N E;  4HJL A;  1O7G A;  3FOU A;  2E74 D;  1SQP E;  1NTM E;  4NBG A;  1UUV A;  2DE5 D;  1KB9 E;  3AZC A;  5CXM A;  3VMH A;  3CX5 E;  2QJK C;  3GKE A;  1P84 E;  5HL4 A;  1SQB E;  4NBC A;  2DE7 A;  1EG9 A;  3C0D A;  2Q3W A;  2B24 A;  1Z03 A;  1VM9 A;  2NVG A;  4H13 D;  4NBF D;  2E4P A;  2JO6 A;  3H1J E;  1VF5 D;  2FYN C;  3GTE A;  1WQL A;  3DQY A;  1VCK A;  2XRX A;  4NBC D;  3H1H E;  1NTZ E;  4AAY B;  1RIE A;  3GTS A;  2BMO A;  2E75 D; 
#chains in the Genus database with same CATH topology
 3N0Q A;  4QCK A;  3GKQ A;  5BOK A;  1O7W A;  1EZV E;  1O7P A;  4QDC A;  3CWB E;  2JZA A;  1L0L E;  1NU1 E;  3GZY A;  4QDD A;  3VCP A;  3H1I E;  4AIV A;  1WW9 A;  3VCA A;  1G8J B;  3GB4 A;  4NBD D;  4NBE D;  3VMI D;  1NDO A;  4PV1 D;  4NBH A;  3GOB A;  1ULI A;  1G8K B;  2YFL A;  4QUR A;  1UUW A;  1KYO E;  2E4Q A;  5KLI C;  4HM8 A;  2FYU E;  3VMG D;  2GBW A;  2D2C D;  4P1C H;  4NBE A;  2DE6 D;  2ZYL A;  1NTK E;  1PP9 E;  1PPJ E;  2HMK A;  3VMI A;  1FQT A;  4NB9 A;  4NBB A;  3GZX A;  1SQX E;  3L75 E;  4HM3 A;  5AEU A;  3GCE A;  4NBG D;  2BCC E;  1Z02 A;  3EQQ A;  2IBZ E;  2ZT9 D;  3GL0 A;  4OGQ D;  1NYK A;  3L74 E;  2A06 E;  1O7N A;  3H1K E;  3TGU E;  5KLV E;  2YFJ A;  3L72 E;  3EN1 A;  2DE6 A;  3GCF A;  4NBB D;  4HM7 A;  4H0L D;  2BMQ A;  1Q90 C;  4QUQ A;  1BE3 E;  4HM5 A;  4NB8 D;  2YFI A;  3L73 E;  4HM0 A;  3L71 E;  2XR8 A;  1ULJ A;  3VMH D;  2QPZ A;  4NBA A;  1SJG A;  2I7F A;  4HM2 A;  4EMJ B;  2NVE A;  4QDF B;  2DE7 D;  2NWF A;  2DE5 A;  1SQV E;  4HM6 A;  4HM1 A;  4NB9 D;  4H44 D;  3VMG A;  2B1X A;  1BCC E;  2YIU C;  4PD4 E;  2HMJ A;  2HMN A;  1JM1 A;  2HML A;  2CKF A;  2HMO A;  2XSO A;  4HM4 A;  1ZRT E;  5KKZ C;  4HKV A;  2NUM A;  3H1L E;  2XSH A;  4NBA D;  1Z01 A;  4P1B H;  4NBD A;  4U3F E;  2GBX A;  2QJY C;  4NBF A;  2NUK A;  1RFS A;  4NBH D;  1SQQ E;  3CXH E;  4QDF A;  2E76 D;  1O7H A;  3GL2 A;  2HMM A;  2NVF A;  3BCC E;  2QJP C;  3L70 E;  3D89 A;  1O7M A;  4NB8 A;  4QUP A;  5AEW A;  2BMR A;  2YVJ B;  1L0N E;  4HJL A;  1O7G A;  3FOU A;  2E74 D;  1SQP E;  1NTM E;  4NBG A;  1UUV A;  2DE5 D;  1KB9 E;  3AZC A;  5CXM A;  3VMH A;  3CX5 E;  2QJK C;  3GKE A;  1P84 E;  5HL4 A;  1SQB E;  4NBC A;  2DE7 A;  1EG9 A;  3C0D A;  2Q3W A;  2B24 A;  1Z03 A;  1VM9 A;  2NVG A;  4H13 D;  4NBF D;  2E4P A;  2JO6 A;  3H1J E;  1VF5 D;  2FYN C;  3GTE A;  1WQL A;  3DQY A;  1VCK A;  2XRX A;  4NBC D;  3H1H E;  1NTZ E;  4AAY B;  1RIE A;  3GTS A;  2BMO A;  2E75 D; 
#chains in the Genus database with same CATH homology
 3N0Q A;  4QCK A;  3GKQ A;  5BOK A;  1O7W A;  1EZV E;  1O7P A;  4QDC A;  3CWB E;  2JZA A;  1L0L E;  1NU1 E;  3GZY A;  4QDD A;  3VCP A;  3H1I E;  4AIV A;  1WW9 A;  3VCA A;  1G8J B;  3GB4 A;  4NBD D;  4NBE D;  3VMI D;  1NDO A;  4PV1 D;  4NBH A;  3GOB A;  1ULI A;  1G8K B;  2YFL A;  4QUR A;  1UUW A;  1KYO E;  2E4Q A;  5KLI C;  4HM8 A;  2FYU E;  3VMG D;  2GBW A;  2D2C D;  4P1C H;  4NBE A;  2DE6 D;  2ZYL A;  1NTK E;  1PP9 E;  1PPJ E;  2HMK A;  3VMI A;  1FQT A;  4NB9 A;  4NBB A;  3GZX A;  1SQX E;  3L75 E;  4HM3 A;  5AEU A;  3GCE A;  4NBG D;  2BCC E;  1Z02 A;  3EQQ A;  2IBZ E;  2ZT9 D;  3GL0 A;  4OGQ D;  1NYK A;  3L74 E;  2A06 E;  1O7N A;  3H1K E;  3TGU E;  5KLV E;  2YFJ A;  3L72 E;  3EN1 A;  2DE6 A;  3GCF A;  4NBB D;  4HM7 A;  4H0L D;  2BMQ A;  1Q90 C;  4QUQ A;  1BE3 E;  4HM5 A;  4NB8 D;  2YFI A;  3L73 E;  4HM0 A;  3L71 E;  2XR8 A;  1ULJ A;  3VMH D;  2QPZ A;  4NBA A;  1SJG A;  2I7F A;  4HM2 A;  4EMJ B;  2NVE A;  4QDF B;  2DE7 D;  2NWF A;  2DE5 A;  1SQV E;  4HM6 A;  4HM1 A;  4NB9 D;  4H44 D;  3VMG A;  2B1X A;  1BCC E;  2YIU C;  4PD4 E;  2HMJ A;  2HMN A;  1JM1 A;  2HML A;  2CKF A;  2HMO A;  2XSO A;  4HM4 A;  1ZRT E;  5KKZ C;  4HKV A;  2NUM A;  3H1L E;  2XSH A;  4NBA D;  1Z01 A;  4P1B H;  4NBD A;  4U3F E;  2GBX A;  2QJY C;  4NBF A;  2NUK A;  1RFS A;  4NBH D;  1SQQ E;  3CXH E;  4QDF A;  2E76 D;  1O7H A;  3GL2 A;  2HMM A;  2NVF A;  3BCC E;  2QJP C;  3L70 E;  3D89 A;  1O7M A;  4NB8 A;  4QUP A;  5AEW A;  2BMR A;  2YVJ B;  1L0N E;  4HJL A;  1O7G A;  3FOU A;  2E74 D;  1SQP E;  1NTM E;  4NBG A;  1UUV A;  2DE5 D;  1KB9 E;  3AZC A;  5CXM A;  3VMH A;  3CX5 E;  2QJK C;  3GKE A;  1P84 E;  5HL4 A;  1SQB E;  4NBC A;  2DE7 A;  1EG9 A;  3C0D A;  2Q3W A;  2B24 A;  1Z03 A;  1VM9 A;  2NVG A;  4H13 D;  4NBF D;  2E4P A;  2JO6 A;  3H1J E;  1VF5 D;  2FYN C;  3GTE A;  1WQL A;  3DQY A;  1VCK A;  2XRX A;  4NBC D;  3H1H E;  1NTZ E;  4AAY B;  1RIE A;  3GTS A;  2BMO A;  2E75 D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...