4HRQA

Identification of function and mechanistic insights of guanine deaminase from nitrosomonas europaea: role of the c-terminal loop in catalysis
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
189
structure length
189
Chain Sequence
MNDALHIGLPPFLVQANNEPRVLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACNGVIYNARC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Cytidine and deoxycytidylate deaminase zinc-binding region
publication title Identification of function and mechanistic insights of guanine deaminase from Nitrosomonas europaea: role of the C-terminal loop in catalysis
pubmed doi rcsb
source organism Nitrosomonas europaea
total genus 62
structure length 189
sequence length 189
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 4hrqA01
4JXEA 4WIGA 2Z3IA 4LCNA 4I43B 2RPZA 4BGDC 4ILGC 1Z3AA 2ZNVA 3ZPCA 3DH1A 4OCLA 5C2OA 2HVVA 2O3KA 4PQTA 1AF2A 2D30A 1ZABA 3EX8A 2FR5A 1OX7A 4MSDA 2D5NA 1CTTA 2G6VA 2PW9A 4OCLB 3OJ6A 1UX1A 1VQ2A 4P9DA 1P6OA 2QLCA 2OG4A 4F7OA 2W4LA 3ZEFB 2Z3GA 4MSQA 3RZUA 1UAQA 4OCNA 3RZVA 2P87A 1UX0A 2Z3HA 2NX8A 3SBGA 4HRQA 2P8RA 3MPZA 4D10F 4OCNB 4E0QA 5M52C 2B3ZA 4P9CA 1WWRA 2G84A 4OCMA 4G3MA 3DMOA 2HVWA 1OI0A 3R2NA 4MSJA 2ZNRA 4OCMB 3ZPGA 4P9EA 1WN6A 5GAOA 3E1UA 1YSDA 2O7PA 4LCPA 4WIFA 2OBCA 4QFTA 4KITC 4HRWA 1R5XA 4LD2A 1WN5A 4ZD4A 4OWPA 2NYTA 1ALNA 4LC5A 5M59B 4ZFRA 4LCOA 4EG2A 4F3WA 4ZFTA 3IJFX 2KKSA 4OWPB 4O8XA 4ZD5A 1UWZA 1MQ0A 2O95A 4MS7A 2FR6A 4O8YA 3B8FA 5DCAJ 2KCQA 4O8XB 4MSMA 1TIYA 1RB7A 1YSBA 4O8YB 1WKQA 1CTUA 2A8NA 5CW6A 3G8QA 2Z3JA 1R5TA 3OCQA 1JTKA 4K1RA 2O96A 4NQLA 4LD4A 2HXVA 2B3JA
chains in the Genus database with same CATH superfamily
4JXEA 4WIGA 2Z3IA 4LCNA 4I43B 2RPZA 4BGDC 1VK9A 1Z3AA 2B1IA 2ZNVA 4ILGC 3ZPCA 3DH1A 4OCLA 5C2OA 2HVVA 1ZCZA 2O3KA 4PQTA 1AF2A 2D30A 1ZABA 3EX8A 2FR5A 1OX7A 4MSDA 2D5NA 1CTTA 2G6VA 2PW9A 4OCLB 3OJ6A 1OZ0A 1PKXA 1UX1A 1VQ2A 4P9DA 4EHIA 3BH1A 1P6OA 2QLCA 2OG4A 4F7OA 2W4LA 3ZEFB 1THZA 2Z3GA 4MSQA 3RZUA 2IU0A 1UAQA 4OCNA 3RZVA 2P87A 1UX0A 2Z3HA 2NX8A 4A1OA 3SBGA 4HRQA 2P8RA 3ZZMA 3MPZA 4D10F 4GGMX 4OCNB 4E0QA 5M52C 2B3ZA 1PL0A 4P9CA 1WWRA 2G84A 4OCMA 4G3MA 3DMOA 2HVWA 1OI0A 3R2NA 4MSJA 3VX8A 2ZNRA 4OCMB 3ZPGA 4P9EA 1WN6A 5GAOA 3E1UA 1YSDA 2O7PA 4LCPA 4WIFA 2OBCA 4J6EA 4QFTA 4KITC 4HRWA 1R5XA 4LD2A 1WN5A 4ZD4A 4OWPA 2NYTA 1ALNA 4LC5A 5M59B 4ZFRA 1P4RA 4LCOA 4EG2A 4F3WA 4ZFTA 2KKSA 3IJFX 4OWPB 4O8XA 4ZD5A 1UWZA 1MQ0A 2O95A 4MS7A 2FR6A 4O8YA 2IU3A 3B8FA 5DCAJ 2KCQA 4O8XB 4MSMA 1TIYA 1RB7A 1YSBA 4O8YB 1WKQA 1CTUA 2A8NA 5CW6A 3G8QA 2Z3JA 2B1GA 1G8MA 1R5TA 1M9NA 3OCQA 1JTKA 4K1RA 2O96A 4NQLA 4LD4A 2HXVA 2B3JA
chains in the Genus database with same CATH topology
4JXEA 4WIGA 2Z3IA 4LCNA 4I43B 2RPZA 4BGDC 4ILGC 1Z3AA 2ZNVA 3ZPCA 3DH1A 4OCLA 5C2OA 2HVVA 2O3KA 4PQTA 1AF2A 2D30A 1ZABA 3EX8A 2FR5A 1OX7A 4MSDA 2D5NA 1CTTA 2G6VA 2PW9A 4OCLB 3OJ6A 1UX1A 1VQ2A 4P9DA 1P6OA 2QLCA 2OG4A 4F7OA 2W4LA 3ZEFB 2Z3GA 4MSQA 3RZUA 1UAQA 4OCNA 3RZVA 2P87A 1UX0A 2Z3HA 2NX8A 3SBGA 4HRQA 2P8RA 3MPZA 4D10F 4OCNB 4E0QA 5M52C 2B3ZA 4P9CA 1WWRA 2G84A 4OCMA 4G3MA 3DMOA 2HVWA 1OI0A 3R2NA 4MSJA 2ZNRA 4OCMB 3ZPGA 4P9EA 1WN6A 5GAOA 3E1UA 1YSDA 2O7PA 4LCPA 4WIFA 2OBCA 4QFTA 4KITC 4HRWA 1R5XA 4LD2A 1WN5A 4ZD4A 4OWPA 2NYTA 1ALNA 4LC5A 5M59B 4ZFRA 4LCOA 4EG2A 4F3WA 4ZFTA 3IJFX 2KKSA 4OWPB 4O8XA 4ZD5A 1UWZA 1MQ0A 2O95A 4MS7A 2FR6A 4O8YA 3B8FA 5DCAJ 2KCQA 4O8XB 4MSMA 1TIYA 1RB7A 1YSBA 4O8YB 1WKQA 1CTUA 2A8NA 5CW6A 3G8QA 2Z3JA 1R5TA 3OCQA 1JTKA 4K1RA 2O96A 4NQLA 4LD4A 2HXVA 2B3JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JXE A;  4WIG A;  2Z3I A;  4LCN A;  4I43 B;  2RPZ A;  4BGD C;  4ILG C;  1Z3A A;  2ZNV A;  3ZPC A;  3DH1 A;  4OCL A;  5C2O A;  2HVV A;  2O3K A;  4PQT A;  1AF2 A;  2D30 A;  1ZAB A;  3EX8 A;  2FR5 A;  1OX7 A;  4MSD A;  2D5N A;  1CTT A;  2G6V A;  2PW9 A;  4OCL B;  3OJ6 A;  1UX1 A;  1VQ2 A;  4P9D A;  1P6O A;  2QLC A;  2OG4 A;  4F7O A;  2W4L A;  3ZEF B;  2Z3G A;  4MSQ A;  3RZU A;  1UAQ A;  4OCN A;  3RZV A;  2P87 A;  1UX0 A;  2Z3H A;  2NX8 A;  3SBG A;  4HRQ A;  2P8R A;  3MPZ A;  4D10 F;  4OCN B;  4E0Q A;  5M52 C;  2B3Z A;  4P9C A;  1WWR A;  2G84 A;  4OCM A;  4G3M A;  3DMO A;  2HVW A;  1OI0 A;  3R2N A;  4MSJ A;  2ZNR A;  4OCM B;  3ZPG A;  4P9E A;  1WN6 A;  5GAO A;  3E1U A;  1YSD A;  2O7P A;  4LCP A;  4WIF A;  2OBC A;  4QFT A;  4KIT C;  4HRW A;  1R5X A;  4LD2 A;  1WN5 A;  4ZD4 A;  4OWP A;  2NYT A;  1ALN A;  4LC5 A;  5M59 B;  4ZFR A;  4LCO A;  4EG2 A;  4F3W A;  4ZFT A;  3IJF X;  2KKS A;  4OWP B;  4O8X A;  4ZD5 A;  1UWZ A;  1MQ0 A;  2O95 A;  4MS7 A;  2FR6 A;  4O8Y A;  3B8F A;  5DCA J;  2KCQ A;  4O8X B;  4MSM A;  1TIY A;  1RB7 A;  1YSB A;  4O8Y B;  1WKQ A;  1CTU A;  2A8N A;  5CW6 A;  3G8Q A;  2Z3J A;  1R5T A;  3OCQ A;  1JTK A;  4K1R A;  2O96 A;  4NQL A;  4LD4 A;  2HXV A;  2B3J A; 
#chains in the Genus database with same CATH topology
 4JXE A;  4WIG A;  2Z3I A;  4LCN A;  4I43 B;  2RPZ A;  4BGD C;  1VK9 A;  1Z3A A;  2B1I A;  2ZNV A;  4ILG C;  3ZPC A;  3DH1 A;  4OCL A;  5C2O A;  2HVV A;  1ZCZ A;  2O3K A;  4PQT A;  1AF2 A;  2D30 A;  1ZAB A;  3EX8 A;  2FR5 A;  1OX7 A;  4MSD A;  2D5N A;  1CTT A;  2G6V A;  2PW9 A;  4OCL B;  3OJ6 A;  1OZ0 A;  1PKX A;  1UX1 A;  1VQ2 A;  4P9D A;  4EHI A;  3BH1 A;  1P6O A;  2QLC A;  2OG4 A;  4F7O A;  2W4L A;  3ZEF B;  1THZ A;  2Z3G A;  4MSQ A;  3RZU A;  2IU0 A;  1UAQ A;  4OCN A;  3RZV A;  2P87 A;  1UX0 A;  2Z3H A;  2NX8 A;  4A1O A;  3SBG A;  4HRQ A;  2P8R A;  3ZZM A;  3MPZ A;  4D10 F;  4GGM X;  4OCN B;  4E0Q A;  5M52 C;  2B3Z A;  1PL0 A;  4P9C A;  1WWR A;  2G84 A;  4OCM A;  4G3M A;  3DMO A;  2HVW A;  1OI0 A;  3R2N A;  4MSJ A;  3VX8 A;  2ZNR A;  4OCM B;  3ZPG A;  4P9E A;  1WN6 A;  5GAO A;  3E1U A;  1YSD A;  2O7P A;  4LCP A;  4WIF A;  2OBC A;  4J6E A;  4QFT A;  4KIT C;  4HRW A;  1R5X A;  4LD2 A;  1WN5 A;  4ZD4 A;  4OWP A;  2NYT A;  1ALN A;  4LC5 A;  5M59 B;  4ZFR A;  1P4R A;  4LCO A;  4EG2 A;  4F3W A;  4ZFT A;  2KKS A;  3IJF X;  4OWP B;  4O8X A;  4ZD5 A;  1UWZ A;  1MQ0 A;  2O95 A;  4MS7 A;  2FR6 A;  4O8Y A;  2IU3 A;  3B8F A;  5DCA J;  2KCQ A;  4O8X B;  4MSM A;  1TIY A;  1RB7 A;  1YSB A;  4O8Y B;  1WKQ A;  1CTU A;  2A8N A;  5CW6 A;  3G8Q A;  2Z3J A;  2B1G A;  1G8M A;  1R5T A;  1M9N A;  3OCQ A;  1JTK A;  4K1R A;  2O96 A;  4NQL A;  4LD4 A;  2HXV A;  2B3J A; 
#chains in the Genus database with same CATH homology
 4JXE A;  4WIG A;  2Z3I A;  4LCN A;  4I43 B;  2RPZ A;  4BGD C;  4ILG C;  1Z3A A;  2ZNV A;  3ZPC A;  3DH1 A;  4OCL A;  5C2O A;  2HVV A;  2O3K A;  4PQT A;  1AF2 A;  2D30 A;  1ZAB A;  3EX8 A;  2FR5 A;  1OX7 A;  4MSD A;  2D5N A;  1CTT A;  2G6V A;  2PW9 A;  4OCL B;  3OJ6 A;  1UX1 A;  1VQ2 A;  4P9D A;  1P6O A;  2QLC A;  2OG4 A;  4F7O A;  2W4L A;  3ZEF B;  2Z3G A;  4MSQ A;  3RZU A;  1UAQ A;  4OCN A;  3RZV A;  2P87 A;  1UX0 A;  2Z3H A;  2NX8 A;  3SBG A;  4HRQ A;  2P8R A;  3MPZ A;  4D10 F;  4OCN B;  4E0Q A;  5M52 C;  2B3Z A;  4P9C A;  1WWR A;  2G84 A;  4OCM A;  4G3M A;  3DMO A;  2HVW A;  1OI0 A;  3R2N A;  4MSJ A;  2ZNR A;  4OCM B;  3ZPG A;  4P9E A;  1WN6 A;  5GAO A;  3E1U A;  1YSD A;  2O7P A;  4LCP A;  4WIF A;  2OBC A;  4QFT A;  4KIT C;  4HRW A;  1R5X A;  4LD2 A;  1WN5 A;  4ZD4 A;  4OWP A;  2NYT A;  1ALN A;  4LC5 A;  5M59 B;  4ZFR A;  4LCO A;  4EG2 A;  4F3W A;  4ZFT A;  3IJF X;  2KKS A;  4OWP B;  4O8X A;  4ZD5 A;  1UWZ A;  1MQ0 A;  2O95 A;  4MS7 A;  2FR6 A;  4O8Y A;  3B8F A;  5DCA J;  2KCQ A;  4O8X B;  4MSM A;  1TIY A;  1RB7 A;  1YSB A;  4O8Y B;  1WKQ A;  1CTU A;  2A8N A;  5CW6 A;  3G8Q A;  2Z3J A;  1R5T A;  3OCQ A;  1JTK A;  4K1R A;  2O96 A;  4NQL A;  4LD4 A;  2HXV A;  2B3J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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