The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
167
|
sequence length |
465
|
structure length |
465
|
Chain Sequence |
VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQGAGNIGKIARKLAEHKLQPQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
2.25 Angstrom resolution crystal structure of UDP-N-acetylmuramate--L-alanine ligase (murC) from Yersinia pestis CO92 in complex with AMP
rcsb |
| source organism |
Yersinia pestis
|
| molecule tags |
Ligase
|
| molecule keywords |
UDP-N-acetylmuramate--L-alanine ligase
|
| total genus |
167
|
| structure length |
465
|
| sequence length |
465
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
6.3.2.8: UDP-N-acetylmuramate--L-alanine ligase. |
| pdb deposition date | 2012-11-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01225 | Mur_ligase | Mur ligase family, catalytic domain |
| A | PF02875 | Mur_ligase_C | Mur ligase family, glutamate ligase domain |
| A | PF08245 | Mur_ligase_M | Mur ligase middle domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Mur-like, catalytic domain | ||
| Alpha Beta | Alpha-Beta Complex | Protein-Tyrosine Phosphatase; Chain A | Mur ligase, C-terminal domain |
