4HZ9A

Crystal structure of the type vi native effector-immunity complex tae3-tai3 from ralstonia pickettii
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
118
structure length
118
Chain Sequence
YKGISAANYAASNIEPNSVGRCAEYVRKAIEWGGISLQRTRSAKDYGPSLLAAGFHEAIGSPMKGDVIVIQPAPGHPHGHMAIYDGSHWISDFKQLHGFYPGPAYRSAKPAYKTYRYH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Putative cytoplasmic protein
publication title Structural insights into the inhibition of type VI effector Tae3 by its immunity protein Tai3
pubmed doi rcsb
source organism Ralstonia pickettii
total genus 32
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2012-11-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4hz9A00
4F4MA 2IO7A 3KW0A 3PVQA 2IOBA 3PBIA 4JXBA 4EQ8A 2LRJA 2VOBA 3I86A 4FGDA 2IO9A 3S0QA 4FQAA 4HZBA 4Q4NA 3NPFA 3O98A 4Q4GX 2K1GA 2VPMA 3A2ZA 3PBCA 4FQBA 2EVRA 4HZ9A 2HBWA 4Q4TA 4EOBA 4F0WA 4CGKA 2K3AA 4R0KA 4CSHA 4F0VA 4HPEA 2IOAA 2XIVA 3H41A 4FGIA 3VPJA 2VPSA 4FDYA 3VPIA 4FGEA 2FG0A 3A2YA 3A30A 2IF6A 4LJ1A 2IO8A 3M1UA 3NE0A 4EQAA 4CT3A 3GT2A 4OLKA
chains in the Genus database with same CATH superfamily
4F4MA 2IO7A 3KW0A 3PVQA 4HFFA 2IOBA 3PBIA 4JXBA 4EQ8A 2LRJA 2VOBA 3I86A 4FGDA 2IO9A 3S0QA 2WP7A 4FQAA 4HZBA 4J30A 4Q4NA 3NPFA 3O98A 4JURA 4Q4GX 2K1GA 2VPMA 3A2ZA 3PBCA 4FQBA 2EVRA 4HFLA 2HBWA 4HZ9A 4Q4TA 4EOBA 4F0WA 4CGKA 2K3AA 4R0KA 4CSHA 4F0VA 4HFKA 4HPEA 2IOAA 2XIVA 3H41A 4FGIA 3VPJA 2VPSA 4FDYA 3VPIA 4FGEA 2FG0A 3A2YA 3A30A 2IF6A 4LJ1A 2IO8A 3M1UA 3NE0A 4EQAA 3EBQA 4J32A 4CT3A 3GT2A 4OLKA
chains in the Genus database with same CATH topology
4F4MA 2IO7A 3KW0A 3PVQA 2IOBA 3PBIA 4JXBA 4EQ8A 2LRJA 2VOBA 3I86A 4FGDA 2IO9A 3S0QA 4FQAA 4HZBA 4Q4NA 3NPFA 3O98A 4Q4GX 2K1GA 2VPMA 3A2ZA 3PBCA 4FQBA 2EVRA 4HZ9A 2HBWA 4Q4TA 4EOBA 4F0WA 4CGKA 2K3AA 4R0KA 4CSHA 4F0VA 4HPEA 2IOAA 2XIVA 3H41A 4FGIA 3VPJA 2VPSA 4FDYA 3VPIA 4FGEA 2FG0A 3A2YA 3A30A 2IF6A 4LJ1A 2IO8A 3M1UA 3NE0A 4EQAA 4CT3A 3GT2A 4OLKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F4M A;  2IO7 A;  3KW0 A;  3PVQ A;  2IOB A;  3PBI A;  4JXB A;  4EQ8 A;  2LRJ A;  2VOB A;  3I86 A;  4FGD A;  2IO9 A;  3S0Q A;  4FQA A;  4HZB A;  4Q4N A;  3NPF A;  3O98 A;  4Q4G X;  2K1G A;  2VPM A;  3A2Z A;  3PBC A;  4FQB A;  2EVR A;  4HZ9 A;  2HBW A;  4Q4T A;  4EOB A;  4F0W A;  4CGK A;  2K3A A;  4R0K A;  4CSH A;  4F0V A;  4HPE A;  2IOA A;  2XIV A;  3H41 A;  4FGI A;  3VPJ A;  2VPS A;  4FDY A;  3VPI A;  4FGE A;  2FG0 A;  3A2Y A;  3A30 A;  2IF6 A;  4LJ1 A;  2IO8 A;  3M1U A;  3NE0 A;  4EQA A;  4CT3 A;  3GT2 A;  4OLK A; 
#chains in the Genus database with same CATH topology
 4F4M A;  2IO7 A;  3KW0 A;  3PVQ A;  4HFF A;  2IOB A;  3PBI A;  4JXB A;  4EQ8 A;  2LRJ A;  2VOB A;  3I86 A;  4FGD A;  2IO9 A;  3S0Q A;  2WP7 A;  4FQA A;  4HZB A;  4J30 A;  4Q4N A;  3NPF A;  3O98 A;  4JUR A;  4Q4G X;  2K1G A;  2VPM A;  3A2Z A;  3PBC A;  4FQB A;  2EVR A;  4HFL A;  2HBW A;  4HZ9 A;  4Q4T A;  4EOB A;  4F0W A;  4CGK A;  2K3A A;  4R0K A;  4CSH A;  4F0V A;  4HFK A;  4HPE A;  2IOA A;  2XIV A;  3H41 A;  4FGI A;  3VPJ A;  2VPS A;  4FDY A;  3VPI A;  4FGE A;  2FG0 A;  3A2Y A;  3A30 A;  2IF6 A;  4LJ1 A;  2IO8 A;  3M1U A;  3NE0 A;  4EQA A;  3EBQ A;  4J32 A;  4CT3 A;  3GT2 A;  4OLK A; 
#chains in the Genus database with same CATH homology
 4F4M A;  2IO7 A;  3KW0 A;  3PVQ A;  2IOB A;  3PBI A;  4JXB A;  4EQ8 A;  2LRJ A;  2VOB A;  3I86 A;  4FGD A;  2IO9 A;  3S0Q A;  4FQA A;  4HZB A;  4Q4N A;  3NPF A;  3O98 A;  4Q4G X;  2K1G A;  2VPM A;  3A2Z A;  3PBC A;  4FQB A;  2EVR A;  4HZ9 A;  2HBW A;  4Q4T A;  4EOB A;  4F0W A;  4CGK A;  2K3A A;  4R0K A;  4CSH A;  4F0V A;  4HPE A;  2IOA A;  2XIV A;  3H41 A;  4FGI A;  3VPJ A;  2VPS A;  4FDY A;  3VPI A;  4FGE A;  2FG0 A;  3A2Y A;  3A30 A;  2IF6 A;  4LJ1 A;  2IO8 A;  3M1U A;  3NE0 A;  4EQA A;  4CT3 A;  3GT2 A;  4OLK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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