The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
103
|
sequence length |
396
|
structure length |
380
|
Chain Sequence |
NNNQVKQLNAKVRSLITGHYTDKLKVEDNSDLSELVNNVNDLSEVFRLTHENLAQEKNRLTSILSYMTDGVLATDRSGKITVINDMAQKQLNVTREQALECNILDILDDDSYTYNDLITKTPEIVLTRRDEYDEFITLRIRFALNRRESGFISGLIAVLHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDDGALTESVAPSFIKVSLDETNRMMRMITDLLSLSRSHLDVELTNFTAFMNYILDRFDQIQSQQSTEIIRDYPDKSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKVTITMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKARGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Mechanistic insights revealed by the crystal structure of a histidine kinase with signal transducer and sensor domains
pubmed doi rcsb |
molecule keywords |
Putative histidine kinase CovS; VicK-like protein
|
molecule tags |
Transferase
|
source organism |
Streptococcus mutans serotype c
|
total genus |
103
|
structure length |
380
|
sequence length |
396
|
chains with identical sequence |
B
|
ec nomenclature |
ec
2.7.13.1: Protein-histidine pros-kinase. |
pdb deposition date | 2012-11-28 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00512 | HisKA | His Kinase A (phospho-acceptor) domain |
A | PF00989 | PAS | PAS fold |
A | PF02518 | HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein; domain 3 | Helicase, Ruva Protein; domain 3 | ||
Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix Hairpins | ||
Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | Beta-Lactamase | ||
Alpha Beta | 2-Layer Sandwich | Heat Shock Protein 90 | Histidine kinase-like ATPase, C-terminal domain |