4I5WA

Crystal structure of yeast ap4a phosphorylase apa2 in complex with amp
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
319
structure length
292
Chain Sequence
MIEENLKQKIHDKFVAAKKNGHLKVTHAESKKLKDPQTTTQYWVTFAPSLALDPFANPDEELVVTEDLNGDGEYKLLLNKFPVVPEHSLLVTSEFKDQRSALTPSDLMTAYNVLCSLQGCERYLVFYNCGPHSGSSQDHKHLQIMQMPEKFIPFQDVLCNGKDHFLPTFNAEPLQDDKVSFAHFVLPLPESSDQVDEDLLAMCYVSLMQRALTFFQDLTKSYNVLLTKKWICVVPRSHAKSGPPLMLNINSTGYCGMILVKDREKLENLTEDPHLVDKSLLQCGFPNTAGQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 5',5'''-P-1,P-4-tetraphosphate phosphorylase 2
publication title Structures of yeast Apa2 reveal catalytic insights into a canonical AP4A phosphorylase of the histidine triad superfamily
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 85
structure length 292
sequence length 319
chains with identical sequence B
ec nomenclature ec 2.7.7.5: Sulfate adenylyltransferase (ADP).
pdb deposition date 2012-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09830 ATP_transf ATP adenylyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.70 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT family, subunit A 4i5wA00
4I5TA 4I5VA 4I5WA
chains in the Genus database with same CATH superfamily
4EQHA 3IMIA 1HXQA 1ST0A 4G0AA 6RHNA 1RZYA 3NRDA 4NDHA 4ZKVA 1Y23A 4I5VA 1GUPA 4XBAA 1ST4A 3QGZA 4NDFA 1XMMA 3O1CA 4YKLB 4NDIA 5I2EA 2Q4LA 1ZWJA 5ED3A 2POFA 2R7PA 4EGUA 5CS2A 3OHEA 4FITA 1Z84A 5IN3A 3LB5A 3SPLA 4QDVA 4I5WA 4QEBA 3L7XA 1L9VA 4NK0A 4G0JA 3O1XA 5IPDA 5IPEA 5FITA 5IPBA 3O0MA 5EMTA 1EMSA 2GU0A 2R7JA 2R8FA 3KSVA 3WO5A 1XMLA 3FITA 1VLRA 1FITA 3BL9A 3N1SA 3SP4A 1GUQA 2LJWA 3N1TA 2FHIA 5I2FA 3I4SA 3O1ZA 4I5TA 1AV5A 4NJZA 2EO4A 4NJYA 2FITA 4INCA 4INIA 4NDGA 3ANOA 3OXKA 3TW2A 5RHNA 3SPDA 1KPAA 3OJ7A 4RHNA 3R6FA 6FITA 2R7CA 2OIKA 1KPFA 4QDEA 2H39A 3P0TA 4ZGLA 5ED6A 3SZQA 4EQGA 1KPBA 4EQEA 3OMFA 3I24A 1KPEA 3BLAA 1HXPA 4NJXA 2Q4HA 3BL7A 3RHNA 1FHIA 4ZKLA 5BV3A 1KPCA 5IPCA
chains in the Genus database with same CATH topology
4I5TA 4I5VA 2LJWA 4I5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I5T A;  4I5V A;  4I5W A; 
#chains in the Genus database with same CATH topology
 4EQH A;  3IMI A;  1HXQ A;  1ST0 A;  4G0A A;  6RHN A;  1RZY A;  3NRD A;  4NDH A;  4ZKV A;  1Y23 A;  4I5V A;  1GUP A;  4XBA A;  1ST4 A;  3QGZ A;  4NDF A;  1XMM A;  3O1C A;  4YKL B;  4NDI A;  5I2E A;  2Q4L A;  1ZWJ A;  5ED3 A;  2POF A;  2R7P A;  4EGU A;  5CS2 A;  3OHE A;  4FIT A;  1Z84 A;  5IN3 A;  3LB5 A;  3SPL A;  4QDV A;  4I5W A;  4QEB A;  3L7X A;  1L9V A;  4NK0 A;  4G0J A;  3O1X A;  5IPD A;  5IPE A;  5FIT A;  5IPB A;  3O0M A;  5EMT A;  1EMS A;  2GU0 A;  2R7J A;  2R8F A;  3KSV A;  3WO5 A;  1XML A;  3FIT A;  1VLR A;  1FIT A;  3BL9 A;  3N1S A;  3SP4 A;  1GUQ A;  2LJW A;  3N1T A;  2FHI A;  5I2F A;  3I4S A;  3O1Z A;  4I5T A;  1AV5 A;  4NJZ A;  2EO4 A;  4NJY A;  2FIT A;  4INC A;  4INI A;  4NDG A;  3ANO A;  3OXK A;  3TW2 A;  5RHN A;  3SPD A;  1KPA A;  3OJ7 A;  4RHN A;  3R6F A;  6FIT A;  2R7C A;  2OIK A;  1KPF A;  4QDE A;  2H39 A;  3P0T A;  4ZGL A;  5ED6 A;  3SZQ A;  4EQG A;  1KPB A;  4EQE A;  3OMF A;  3I24 A;  1KPE A;  3BLA A;  1HXP A;  4NJX A;  2Q4H A;  3BL7 A;  3RHN A;  1FHI A;  4ZKL A;  5BV3 A;  1KPC A;  5IPC A; 
#chains in the Genus database with same CATH homology
 4I5T A;  4I5V A;  2LJW A;  4I5W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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