4I71A

Crystal structure of the trypanosoma brucei inosine-adenosine-guanosine nucleoside hydrolase in complex with a trypanocidal compound
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
330
structure length
324
Chain Sequence
GSHMAKTVILDHDGNKDDFVAMILLLSNPKKVNLIGCICTDADCFVENGFDVTGKIMCAHRLIKTPLFPIGKSTATAVNAFPTEWRFSAKNLDDMPFLNIVEDVALWEKLKPENEAHNGQQLLADLVMKSKEKVTVCVTGPLSNMAWCIEKYGEAFTSKVEECVIMGGAVDVGGNVFLPTTDGSAEWNIYWDPPAAKKVLCCPNIRCVLFSLDATNTVPVRSVDVKGFGAQNQYLLSQMVGTMWAMSTHEEILRDGDAYYAWDALTAAYILEPTIATLEPVALDVDVSKGKSEGRTPRAPCVHVARNPSKQMFHDLVFASTRVC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Inosine-adenosine-guanosine-nucleoside hydrolase
publication title Structures of purine nucleosidase from Trypanosoma brucei bound to isozyme-specific trypanocidals and a novel metalorganic inhibitor
pubmed doi rcsb
source organism Trypanosoma brucei brucei
total genus 130
structure length 324
sequence length 330
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2012-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 4i71A00
1KIEA 3MKMA 2FF1A 3FZ0A 4I72A 4P5FA 1MASA 3G5IA 4WR2A 5TSQA 4KPNA 3T8IA 1R4FA 3EPWA 1YOEA 1HP0A 2FF2A 1KICA 1HOZA 2MASA 3MKNA 4I75A 4I73A 3B9XA 3T8JA 2C40A 3B9GA 2YHGA 4I71A 1EZRA 4I70A 4KL0A 4KPOA 4I74A 3EPXA 1Q8FA
chains in the Genus database with same CATH superfamily
1KIEA 3MKMA 2FF1A 3FZ0A 4I72A 4P5FA 1MASA 3G5IA 4WR2A 5TSQA 4KPNA 3T8IA 1R4FA 3EPWA 1YOEA 1HP0A 2FF2A 1KICA 1HOZA 2MASA 3MKNA 4I75A 4I73A 3B9XA 3T8JA 2C40A 3B9GA 2YHGA 4I71A 1EZRA 4I70A 4KL0A 4KPOA 4I74A 3EPXA 1Q8FA
chains in the Genus database with same CATH topology
1KIEA 3MKMA 2FF1A 3FZ0A 4I72A 4P5FA 1MASA 3G5IA 4WR2A 5TSQA 4KPNA 3T8IA 1R4FA 3EPWA 1YOEA 1HP0A 2FF2A 1KICA 1HOZA 2MASA 3MKNA 4I75A 4I73A 3B9XA 3T8JA 2C40A 3B9GA 2YHGA 4I71A 1EZRA 4I70A 4KL0A 4KPOA 4I74A 3EPXA 1Q8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KIE A;  3MKM A;  2FF1 A;  3FZ0 A;  4I72 A;  4P5F A;  1MAS A;  3G5I A;  4WR2 A;  5TSQ A;  4KPN A;  3T8I A;  1R4F A;  3EPW A;  1YOE A;  1HP0 A;  2FF2 A;  1KIC A;  1HOZ A;  2MAS A;  3MKN A;  4I75 A;  4I73 A;  3B9X A;  3T8J A;  2C40 A;  3B9G A;  2YHG A;  4I71 A;  1EZR A;  4I70 A;  4KL0 A;  4KPO A;  4I74 A;  3EPX A;  1Q8F A; 
#chains in the Genus database with same CATH topology
 1KIE A;  3MKM A;  2FF1 A;  3FZ0 A;  4I72 A;  4P5F A;  1MAS A;  3G5I A;  4WR2 A;  5TSQ A;  4KPN A;  3T8I A;  1R4F A;  3EPW A;  1YOE A;  1HP0 A;  2FF2 A;  1KIC A;  1HOZ A;  2MAS A;  3MKN A;  4I75 A;  4I73 A;  3B9X A;  3T8J A;  2C40 A;  3B9G A;  2YHG A;  4I71 A;  1EZR A;  4I70 A;  4KL0 A;  4KPO A;  4I74 A;  3EPX A;  1Q8F A; 
#chains in the Genus database with same CATH homology
 1KIE A;  3MKM A;  2FF1 A;  3FZ0 A;  4I72 A;  4P5F A;  1MAS A;  3G5I A;  4WR2 A;  5TSQ A;  4KPN A;  3T8I A;  1R4F A;  3EPW A;  1YOE A;  1HP0 A;  2FF2 A;  1KIC A;  1HOZ A;  2MAS A;  3MKN A;  4I75 A;  4I73 A;  3B9X A;  3T8J A;  2C40 A;  3B9G A;  2YHG A;  4I71 A;  1EZR A;  4I70 A;  4KL0 A;  4KPO A;  4I74 A;  3EPX A;  1Q8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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