4I72A

Crystal structure of the trypanosoma brucei inosine-adenosine-guanosine nucleoside hydrolase in complex with immucillin a
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
330
structure length
328
Chain Sequence
GSHMAKTVILDHDGNKDDFVAMILLLSNPKKVNLIGCICTDADCFVENGFDVTGKIMCAMHRLIKTPLFPIGKSTATAVNAFPTEWRFSAKNLDDMPFLNIVEDVALWEKLKPENEAHNGQQLLADLVMKSKEKVTVCVTGPLSNMAWCIEKYGEAFTSKVEECVIMGGAVDVGGNVFLPTTDGSAEWNIYWDPPAAKKVLCCPNIRCVLFSLDATNTVPVRSVDVKGFGAQNQYLLSQMVGTMWAMSTHEEILRDGDAYYAWDALTAAYILEPTIATLEPVALDVDVSKGKSEGRTPRASGKPCVHVARNPSKQMFHDLVFASTRVC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Inosine-adenosine-guanosine-nucleoside hydrolase
publication title Structures of purine nucleosidase from Trypanosoma brucei bound to isozyme-specific trypanocidals and a novel metalorganic inhibitor
pubmed doi rcsb
source organism Trypanosoma brucei brucei
total genus 132
structure length 328
sequence length 330
chains with identical sequence B
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2012-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 4i72A00
1Q8FA 4I73A 4KL0A 3T8JA 4I70A 1KIEA 1YOEA 2FF1A 1HP0A 3B9XA 1MASA 1R4FA 3T8IA 3G5IA 4WR2A 3FZ0A 4I75A 2FF2A 4I74A 4I72A 5TSQA 4KPNA 3MKNA 2YHGA 4I71A 3B9GA 1KICA 2MASA 4KPOA 1HOZA 4P5FA 3EPWA 2C40A 3MKMA 3EPXA 1EZRA
chains in the Genus database with same CATH superfamily
1Q8FA 4I73A 4KL0A 3T8JA 4I70A 1KIEA 1YOEA 2FF1A 1HP0A 3B9XA 1MASA 1R4FA 3T8IA 3G5IA 4WR2A 3FZ0A 4I75A 2FF2A 4I74A 4I72A 5TSQA 4KPNA 3MKNA 2YHGA 4I71A 3B9GA 1KICA 2MASA 4KPOA 1HOZA 4P5FA 3EPWA 2C40A 3MKMA 3EPXA 1EZRA
chains in the Genus database with same CATH topology
1Q8FA 4I73A 4KL0A 3T8JA 4I70A 1KIEA 1YOEA 2FF1A 1HP0A 3B9XA 1MASA 1R4FA 3T8IA 3G5IA 4WR2A 3FZ0A 4I75A 2FF2A 4I74A 4I72A 5TSQA 4KPNA 3MKNA 2YHGA 4I71A 3B9GA 1KICA 2MASA 4KPOA 1HOZA 4P5FA 3EPWA 2C40A 3MKMA 3EPXA 1EZRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q8F A;  4I73 A;  4KL0 A;  3T8J A;  4I70 A;  1KIE A;  1YOE A;  2FF1 A;  1HP0 A;  3B9X A;  1MAS A;  1R4F A;  3T8I A;  3G5I A;  4WR2 A;  3FZ0 A;  4I75 A;  2FF2 A;  4I74 A;  4I72 A;  5TSQ A;  4KPN A;  3MKN A;  2YHG A;  4I71 A;  3B9G A;  1KIC A;  2MAS A;  4KPO A;  1HOZ A;  4P5F A;  3EPW A;  2C40 A;  3MKM A;  3EPX A;  1EZR A; 
#chains in the Genus database with same CATH topology
 1Q8F A;  4I73 A;  4KL0 A;  3T8J A;  4I70 A;  1KIE A;  1YOE A;  2FF1 A;  1HP0 A;  3B9X A;  1MAS A;  1R4F A;  3T8I A;  3G5I A;  4WR2 A;  3FZ0 A;  4I75 A;  2FF2 A;  4I74 A;  4I72 A;  5TSQ A;  4KPN A;  3MKN A;  2YHG A;  4I71 A;  3B9G A;  1KIC A;  2MAS A;  4KPO A;  1HOZ A;  4P5F A;  3EPW A;  2C40 A;  3MKM A;  3EPX A;  1EZR A; 
#chains in the Genus database with same CATH homology
 1Q8F A;  4I73 A;  4KL0 A;  3T8J A;  4I70 A;  1KIE A;  1YOE A;  2FF1 A;  1HP0 A;  3B9X A;  1MAS A;  1R4F A;  3T8I A;  3G5I A;  4WR2 A;  3FZ0 A;  4I75 A;  2FF2 A;  4I74 A;  4I72 A;  5TSQ A;  4KPN A;  3MKN A;  2YHG A;  4I71 A;  3B9G A;  1KIC A;  2MAS A;  4KPO A;  1HOZ A;  4P5F A;  3EPW A;  2C40 A;  3MKM A;  3EPX A;  1EZR A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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