4I84A

The crystal structure of the haemophilus influenzae hxua secretion domain involved in the two-partner secretion pathway
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
301
structure length
296
Chain Sequence
b'RDLPQGSSVVVGEANVSTIGNKMTIDQKTPTTQIDWHSFDIGQNKEVEFKQPDANSVAYNRVTGGNASQIQGKLTANGKVYLANPNGVIITQGAEINVAGLFATTKDLERISENGNGNGNKFTRKVVKEGQVINKGKIKAKDFVVLNGDKVINEGEIDATNNGKVYLSSGYNFTFTLSDSSISVALEDNAVQSIVQNEGIIKAGDITLNAKGRNQALDSLVMNNGVLEATKVSNKNGKVVLSADDVQLNNKSDIKGESEVVFTNEPKNKIKITSQTGSKVTSPKINFTGKSVNING'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Heme/hemopexin-binding protein
publication title Structure of the secretion domain of HxuA from Haemophilus influenzae.
pubmed doi rcsb
source organism Haemophilus influenzae
molecule tags Protein transport
total genus 112
structure length 296
sequence length 301
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-12-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4i84A00
4XNFA 3JURA 4NK8A 1K5CA 1AIRA 1KCCA 1QJVA 2NTQA 4YZXA 3EQNA 1PLUA 2UVFA 1O8DA 1JRGA 4W8QA 1RMGA 2O04A 2INUA 1DBGA 1EE6A 1O88A 1VBLA 4XN0A 3B8YA 4YELA 1WMRA 2VJJA 1PE9A 1O8LA 4AVZA 1O8MA 2INVA 3VSUA 2X6YA 2O0VA 2VJIA 3VMWA 2BSPA 2EWEA 2NT9A 1RU4A 1OGMX 4XKVA 1O8GA 3GRHA 4Z05A 1IB4A 2ODLA 3GQ8A 4U4BA 2X6XA 4XR6A 2O0WA 1OOCA 2NSTA 3EQOA 4XL9A 1IDJA 3GQ7A 3FY3A 5C1CA 1JTAA 1O8EA 4OJ6A 4NK6A 3GQAA 1RWRA 4XOTA 2QY1A 2X6WA 1BN8A 4W8TA 1OFLA 5AMVA 1KTWA 1BHEA 1OFMA 4C2LA 1KCDA 1O8IA 2NT6A 2NZMA 2PYHA 4OJ5A 3LMWA 3T9GA 2Z8GA 4OJPA 1GQ8A 4XONA 4YZQA 4XLAA 2NTBA 3ZPPA 3VMVA 2VBEA 4URRA 4Z06A 5C1EA 1O8FA 1PXZA 3UW0A 3VSTA 2VBMA 4YZAA 4MR0A 3B4NA 4MXNA 1HG8A 4OJLA 4Z03A 3KRGA 4W8RA 2X85A 2NTPA 1QCXA 4XN3A 2IQ7A 1O8HA 2QX3A 4YEJA 2O17A 4XMYA 1XG2A 1IA5A 4XORA 2NSPA 2O1DA 3WWGA 2UVEA 4U49A 3B90A 4XM3A 3SUCA 1DBOA 4W8SA 2PECA 2QXZA 1OGOX 1O8KA 3ZSCA 2PYGA 4XOPA 3GQ9A 2VBKA 1H80A 1X0CA 4YZ0A 2X3HA 4I84A 1CZFA 3VSVA 4EW9A 4HWVA 4XLFA 1IDKA 4XLHA 4OZZA 1O8JA 4OZYA 4XLEA 4XKWA 4XLCA 4OJOA 4PMHA 1NHCA 4XQFA
chains in the Genus database with same CATH superfamily
4XNFA 3JURA 4NK8A 1QRBA 1K5CA 1AIRA 4YCQA 3DU1X 1KCCA 4XQFA 3SYJA 1WXRA 1QJVA 2NTQA 3LYCA 3NB2A 1TYXA 3SY2A 3PETA 4YZXA 3EQNA 5JMCB 4YDTA 2VFOA 1PLUA 2UVFA 1O8DA 1JRGA 2VFPA 4W8QA 4YFOA 1RMGA 2O04A 2XT2A 4OM9A 2INUA 1HF2A 1DBGA 1EE6A 2IOUG 1OFEA 1O88A 1VBLA 3BH7B 4JRAC 4XN0A 3NAWA 3B8YA 4YELA 1WMRA 2VJJA 1PE9A 1O8LA 1TYWA 4AVZA 1O8MA 2INVA 2BM4A 3VSUA 2X6YA 2O0VA 2VJIA 2VFNA 1DABA 3VMWA 2BSPA 1K8FA 2EWEA 2NT9A 2B0RA 3LJYA 1RU4A 1OGMX 1QQ1A 4XKVA 4V02C 1O8GA 1TYVA 3GRHA 4Z05A 1IB4A 2ODLA 3GQ8A 4U4BA 2X6XA 4XR6A 1QA1A 2O0WA 1OOCA 2NSTA 3EQOA 3BH6B 1IDJA 4XL9A 3GQ7A 3FY3A 5C1CA 1JTAA 1QA3A 2BM7A 1O8EA 4OJ6A 4NK6A 3GQAA 1QA2A 2VFMA 1RWRA 4XOTA 2QY1A 4YEIA 2BM5A 1LM1A 2XC1A 2X6WA 1LLZA 1BN8A 1OFLA 4W8TA 5AMVA 1KTWA 1BHEA 1OFMA 2G0YA 2O6WA 1LLWA 1TYUA 3ML3A 4C2LA 1KQ5A 1TSPA 1KCDA 1O8IA 1OFDA 2NT6A 2NZMA 2PYHA 4OJ5A 3LMWA 3JX8A 3T9GA 2Z8GA 4OJPA 1GQ8A 4XONA 4YZQA 1QRCA 2NTBA 4KH3A 4XLAA 3ZPPA 3VMVA 2V5IA 2VBEA 4URRA 3PSZA 4Z06A 5C1EA 1O8FA 3AK5A 1PXZA 3UW0A 3VSTA 2VBMA 3SQVA 2J8KA 4OPWA 3RIQA 4YZAA 4MR0A 3B4NA 4MXNA 1HG8A 2XTYA 4OJLA 4Z03A 3KRGA 4W8RA 2X85A 2NTPA 1QCXA 4XN3A 3TH0A 2IQ7A 1O8HA 2QX3A 2QYUA 2YUHA 2XT4A 1EA0A 4YEJA 2O17A 4XMYA 1XG2A 1IA5A 4XORA 2NSPA 2BX6A 2O1DA 3WWGA 3P4GA 2UVEA 3N6ZA 5JLVC 4U49A 3B90A 4XM3A 2VFQA 3SUCA 1DBOA 2QZAA 2PECA 3H09A 4W8SA 2QXZA 1K4ZA 1OGOX 1O8KA 1L1IA 3ZSCA 2PYGA 3N90A 4XOPA 3SZEA 2W7ZA 3GQ9A 2VBKA 1H80A 1X0CA 4YZ0A 2X3HA 4I84A 1CZFA 3VSVA 1EZGA 2XTXA 4EW9A 4HWVA 4XLFA 1IDKA 4XLHA 4OZZA 5DNSA 1O8JA 2XTWA 2F3LA 4OZYA 4YC5A 4XLEA 4XKWA 4XLCA 4OJOA 2BM6A 4PMHA 2J8IA 1NHCA 1CLWA 3PSSA
chains in the Genus database with same CATH topology
4XNFA 3JURA 4NK8A 1K5CA 1AIRA 1KCCA 1QJVA 2NTQA 4YZXA 3EQNA 1PLUA 2UVFA 1O8DA 1JRGA 4W8QA 1RMGA 2O04A 2INUA 1DBGA 1EE6A 1O88A 1VBLA 4XN0A 3B8YA 4YELA 1WMRA 2VJJA 1PE9A 1O8LA 4AVZA 1O8MA 2INVA 3VSUA 2X6YA 2O0VA 2VJIA 3VMWA 2BSPA 2EWEA 2NT9A 1RU4A 1OGMX 4XKVA 1O8GA 3GRHA 4Z05A 1IB4A 2ODLA 3GQ8A 4U4BA 2X6XA 4XR6A 2O0WA 1OOCA 2NSTA 3EQOA 4XL9A 1IDJA 3GQ7A 3FY3A 5C1CA 1JTAA 1O8EA 4OJ6A 4NK6A 3GQAA 1RWRA 4XOTA 2QY1A 2X6WA 1BN8A 4W8TA 1OFLA 5AMVA 1KTWA 1BHEA 1OFMA 4C2LA 1KCDA 1O8IA 2NT6A 2NZMA 2PYHA 4OJ5A 3LMWA 3T9GA 2Z8GA 4OJPA 1GQ8A 4XONA 4YZQA 4XLAA 2NTBA 3ZPPA 3VMVA 2VBEA 4URRA 4Z06A 5C1EA 1O8FA 1PXZA 3UW0A 3VSTA 2VBMA 4YZAA 4MR0A 3B4NA 4MXNA 1HG8A 4OJLA 4Z03A 3KRGA 4W8RA 2X85A 2NTPA 1QCXA 4XN3A 2IQ7A 1O8HA 2QX3A 4YEJA 2O17A 4XMYA 1XG2A 1IA5A 4XORA 2NSPA 2O1DA 3WWGA 2UVEA 4U49A 3B90A 4XM3A 3SUCA 1DBOA 4W8SA 2PECA 2QXZA 1OGOX 1O8KA 3ZSCA 2PYGA 4XOPA 3GQ9A 2VBKA 1H80A 1X0CA 4YZ0A 2X3HA 4I84A 1CZFA 3VSVA 4EW9A 4HWVA 4XLFA 1IDKA 4XLHA 4OZZA 1O8JA 4OZYA 4XLEA 4XKWA 4XLCA 4OJOA 4PMHA 1NHCA 4XQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XNF A;  3JUR A;  4NK8 A;  1K5C A;  1AIR A;  1KCC A;  1QJV A;  2NTQ A;  4YZX A;  3EQN A;  1PLU A;  2UVF A;  1O8D A;  1JRG A;  4W8Q A;  1RMG A;  2O04 A;  2INU A;  1DBG A;  1EE6 A;  1O88 A;  1VBL A;  4XN0 A;  3B8Y A;  4YEL A;  1WMR A;  2VJJ A;  1PE9 A;  1O8L A;  4AVZ A;  1O8M A;  2INV A;  3VSU A;  2X6Y A;  2O0V A;  2VJI A;  3VMW A;  2BSP A;  2EWE A;  2NT9 A;  1RU4 A;  1OGM X;  4XKV A;  1O8G A;  3GRH A;  4Z05 A;  1IB4 A;  2ODL A;  3GQ8 A;  4U4B A;  2X6X A;  4XR6 A;  2O0W A;  1OOC A;  2NST A;  3EQO A;  4XL9 A;  1IDJ A;  3GQ7 A;  3FY3 A;  5C1C A;  1JTA A;  1O8E A;  4OJ6 A;  4NK6 A;  3GQA A;  1RWR A;  4XOT A;  2QY1 A;  2X6W A;  1BN8 A;  4W8T A;  1OFL A;  5AMV A;  1KTW A;  1BHE A;  1OFM A;  4C2L A;  1KCD A;  1O8I A;  2NT6 A;  2NZM A;  2PYH A;  4OJ5 A;  3LMW A;  3T9G A;  2Z8G A;  4OJP A;  1GQ8 A;  4XON A;  4YZQ A;  4XLA A;  2NTB A;  3ZPP A;  3VMV A;  2VBE A;  4URR A;  4Z06 A;  5C1E A;  1O8F A;  1PXZ A;  3UW0 A;  3VST A;  2VBM A;  4YZA A;  4MR0 A;  3B4N A;  4MXN A;  1HG8 A;  4OJL A;  4Z03 A;  3KRG A;  4W8R A;  2X85 A;  2NTP A;  1QCX A;  4XN3 A;  2IQ7 A;  1O8H A;  2QX3 A;  4YEJ A;  2O17 A;  4XMY A;  1XG2 A;  1IA5 A;  4XOR A;  2NSP A;  2O1D A;  3WWG A;  2UVE A;  4U49 A;  3B90 A;  4XM3 A;  3SUC A;  1DBO A;  4W8S A;  2PEC A;  2QXZ A;  1OGO X;  1O8K A;  3ZSC A;  2PYG A;  4XOP A;  3GQ9 A;  2VBK A;  1H80 A;  1X0C A;  4YZ0 A;  2X3H A;  4I84 A;  1CZF A;  3VSV A;  4EW9 A;  4HWV A;  4XLF A;  1IDK A;  4XLH A;  4OZZ A;  1O8J A;  4OZY A;  4XLE A;  4XKW A;  4XLC A;  4OJO A;  4PMH A;  1NHC A;  4XQF A; 
#chains in the Genus database with same CATH topology
 4XNF A;  3JUR A;  4NK8 A;  1QRB A;  1K5C A;  1AIR A;  4YCQ A;  3DU1 X;  1KCC A;  4XQF A;  3SYJ A;  1WXR A;  1QJV A;  2NTQ A;  3LYC A;  3NB2 A;  1TYX A;  3SY2 A;  3PET A;  4YZX A;  3EQN A;  5JMC B;  4YDT A;  2VFO A;  1PLU A;  2UVF A;  1O8D A;  1JRG A;  2VFP A;  4W8Q A;  4YFO A;  1RMG A;  2O04 A;  2XT2 A;  4OM9 A;  2INU A;  1HF2 A;  1DBG A;  1EE6 A;  2IOU G;  1OFE A;  1O88 A;  1VBL A;  3BH7 B;  4JRA C;  4XN0 A;  3NAW A;  3B8Y A;  4YEL A;  1WMR A;  2VJJ A;  1PE9 A;  1O8L A;  1TYW A;  4AVZ A;  1O8M A;  2INV A;  2BM4 A;  3VSU A;  2X6Y A;  2O0V A;  2VJI A;  2VFN A;  1DAB A;  3VMW A;  2BSP A;  1K8F A;  2EWE A;  2NT9 A;  2B0R A;  3LJY A;  1RU4 A;  1OGM X;  1QQ1 A;  4XKV A;  4V02 C;  1O8G A;  1TYV A;  3GRH A;  4Z05 A;  1IB4 A;  2ODL A;  3GQ8 A;  4U4B A;  2X6X A;  4XR6 A;  1QA1 A;  2O0W A;  1OOC A;  2NST A;  3EQO A;  3BH6 B;  1IDJ A;  4XL9 A;  3GQ7 A;  3FY3 A;  5C1C A;  1JTA A;  1QA3 A;  2BM7 A;  1O8E A;  4OJ6 A;  4NK6 A;  3GQA A;  1QA2 A;  2VFM A;  1RWR A;  4XOT A;  2QY1 A;  4YEI A;  2BM5 A;  1LM1 A;  2XC1 A;  2X6W A;  1LLZ A;  1BN8 A;  1OFL A;  4W8T A;  5AMV A;  1KTW A;  1BHE A;  1OFM A;  2G0Y A;  2O6W A;  1LLW A;  1TYU A;  3ML3 A;  4C2L A;  1KQ5 A;  1TSP A;  1KCD A;  1O8I A;  1OFD A;  2NT6 A;  2NZM A;  2PYH A;  4OJ5 A;  3LMW A;  3JX8 A;  3T9G A;  2Z8G A;  4OJP A;  1GQ8 A;  4XON A;  4YZQ A;  1QRC A;  2NTB A;  4KH3 A;  4XLA A;  3ZPP A;  3VMV A;  2V5I A;  2VBE A;  4URR A;  3PSZ A;  4Z06 A;  5C1E A;  1O8F A;  3AK5 A;  1PXZ A;  3UW0 A;  3VST A;  2VBM A;  3SQV A;  2J8K A;  4OPW A;  3RIQ A;  4YZA A;  4MR0 A;  3B4N A;  4MXN A;  1HG8 A;  2XTY A;  4OJL A;  4Z03 A;  3KRG A;  4W8R A;  2X85 A;  2NTP A;  1QCX A;  4XN3 A;  3TH0 A;  2IQ7 A;  1O8H A;  2QX3 A;  2QYU A;  2YUH A;  2XT4 A;  1EA0 A;  4YEJ A;  2O17 A;  4XMY A;  1XG2 A;  1IA5 A;  4XOR A;  2NSP A;  2BX6 A;  2O1D A;  3WWG A;  3P4G A;  2UVE A;  3N6Z A;  5JLV C;  4U49 A;  3B90 A;  4XM3 A;  2VFQ A;  3SUC A;  1DBO A;  2QZA A;  2PEC A;  3H09 A;  4W8S A;  2QXZ A;  1K4Z A;  1OGO X;  1O8K A;  1L1I A;  3ZSC A;  2PYG A;  3N90 A;  4XOP A;  3SZE A;  2W7Z A;  3GQ9 A;  2VBK A;  1H80 A;  1X0C A;  4YZ0 A;  2X3H A;  4I84 A;  1CZF A;  3VSV A;  1EZG A;  2XTX A;  4EW9 A;  4HWV A;  4XLF A;  1IDK A;  4XLH A;  4OZZ A;  5DNS A;  1O8J A;  2XTW A;  2F3L A;  4OZY A;  4YC5 A;  4XLE A;  4XKW A;  4XLC A;  4OJO A;  2BM6 A;  4PMH A;  2J8I A;  1NHC A;  1CLW A;  3PSS A; 
#chains in the Genus database with same CATH homology
 4XNF A;  3JUR A;  4NK8 A;  1K5C A;  1AIR A;  1KCC A;  1QJV A;  2NTQ A;  4YZX A;  3EQN A;  1PLU A;  2UVF A;  1O8D A;  1JRG A;  4W8Q A;  1RMG A;  2O04 A;  2INU A;  1DBG A;  1EE6 A;  1O88 A;  1VBL A;  4XN0 A;  3B8Y A;  4YEL A;  1WMR A;  2VJJ A;  1PE9 A;  1O8L A;  4AVZ A;  1O8M A;  2INV A;  3VSU A;  2X6Y A;  2O0V A;  2VJI A;  3VMW A;  2BSP A;  2EWE A;  2NT9 A;  1RU4 A;  1OGM X;  4XKV A;  1O8G A;  3GRH A;  4Z05 A;  1IB4 A;  2ODL A;  3GQ8 A;  4U4B A;  2X6X A;  4XR6 A;  2O0W A;  1OOC A;  2NST A;  3EQO A;  4XL9 A;  1IDJ A;  3GQ7 A;  3FY3 A;  5C1C A;  1JTA A;  1O8E A;  4OJ6 A;  4NK6 A;  3GQA A;  1RWR A;  4XOT A;  2QY1 A;  2X6W A;  1BN8 A;  4W8T A;  1OFL A;  5AMV A;  1KTW A;  1BHE A;  1OFM A;  4C2L A;  1KCD A;  1O8I A;  2NT6 A;  2NZM A;  2PYH A;  4OJ5 A;  3LMW A;  3T9G A;  2Z8G A;  4OJP A;  1GQ8 A;  4XON A;  4YZQ A;  4XLA A;  2NTB A;  3ZPP A;  3VMV A;  2VBE A;  4URR A;  4Z06 A;  5C1E A;  1O8F A;  1PXZ A;  3UW0 A;  3VST A;  2VBM A;  4YZA A;  4MR0 A;  3B4N A;  4MXN A;  1HG8 A;  4OJL A;  4Z03 A;  3KRG A;  4W8R A;  2X85 A;  2NTP A;  1QCX A;  4XN3 A;  2IQ7 A;  1O8H A;  2QX3 A;  4YEJ A;  2O17 A;  4XMY A;  1XG2 A;  1IA5 A;  4XOR A;  2NSP A;  2O1D A;  3WWG A;  2UVE A;  4U49 A;  3B90 A;  4XM3 A;  3SUC A;  1DBO A;  4W8S A;  2PEC A;  2QXZ A;  1OGO X;  1O8K A;  3ZSC A;  2PYG A;  4XOP A;  3GQ9 A;  2VBK A;  1H80 A;  1X0C A;  4YZ0 A;  2X3H A;  4I84 A;  1CZF A;  3VSV A;  4EW9 A;  4HWV A;  4XLF A;  1IDK A;  4XLH A;  4OZZ A;  1O8J A;  4OZY A;  4XLE A;  4XKW A;  4XLC A;  4OJO A;  4PMH A;  1NHC A;  4XQF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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