4I84A

The crystal structure of the haemophilus influenzae hxua secretion domain involved in the two-partner secretion pathway
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
301
structure length
296
Chain Sequence
RDLPQGSSVVVGEANVSTIGNKMTIDQKTPTTQIDWHSFDIGQNKEVEFKQPDANSVAYNRVTGGNASQIQGKLTANGKVYLANPNGVIITQGAEINVAGLFATTKDLERISENGNGNGNKFTRKVVKEGQVINKGKIKAKDFVVLNGDKVINEGEIDATNNGKVYLSSGYNFTFTLSDSSISVALEDNAVQSIVQNEGIIKAGDITLNAKGRNQALDSLVMNNGVLEATKVSNKNGKVVLSADDVQLNNKSDIKGESEVVFTNEPKNKIKITSQTGSKVTSPKINFTGKSVNING
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Heme/hemopexin-binding protein
publication title Structure of the secretion domain of HxuA from Haemophilus influenzae.
pubmed doi rcsb
source organism Haemophilus influenzae
molecule tags Protein transport
total genus 112
structure length 296
sequence length 301
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-12-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4i84A00
4OJOA 1O8LA 4XLCA 2UVFA 1PE9A 4XOTA 4XN0A 1DBGA 2VBMA 2QX3A 4Z05A 3VSVA 1H80A 2PECA 2NTBA 4MR0A 2VJJA 2NTPA 1IB4A 3GQAA 4XOPA 5C1EA 2IQ7A 1O8GA 4XKWA 1X0CA 1OFMA 4XR6A 3EQNA 1BN8A 1VBLA 3T9GA 1BHEA 4EW9A 5C1CA 1O8FA 2Z8GA 4OJPA 4W8RA 3VMVA 2NZMA 1JTAA 2VBKA 1O8EA 1IDJA 1O88A 3GQ9A 4NK6A 1RU4A 4YZXA 4XORA 4XMYA 2PYHA 1DBOA 4U4BA 4Z03A 2QY1A 1WMRA 4OZZA 1QJVA 3FY3A 2BSPA 4XLHA 3VSTA 4OJ6A 2ODLA 1PXZA 5AMVA 1O8HA 2QXZA 1O8MA 1XG2A 1IA5A 4HWVA 4YZQA 3GQ8A 4W8QA 3SUCA 2PYGA 4PMHA 2INVA 2O17A 3UW0A 1KCCA 1NHCA 4U49A 2UVEA 2O0VA 1GQ8A 1AIRA 2NSPA 3KRGA 4C2LA 4XQFA 2X85A 4W8SA 3JURA 1OGMX 4W8TA 1RWRA 3GQ7A 3EQOA 2INUA 3B4NA 1PLUA 4YZAA 3VMWA 1EE6A 4XN3A 1KTWA 4OZYA 3LMWA 4XLAA 4YELA 4AVZA 1CZFA 2O04A 4YEJA 1OOCA 1JRGA 2NSTA 3GRHA 2X6XA 2X3HA 3ZSCA 4XKVA 4NK8A 4XLEA 1OGOX 1O8DA 4I84A 2VJIA 4XONA 2X6WA 4XNFA 1O8IA 2X6YA 4OJ5A 2O0WA 2EWEA 2NTQA 3VSUA 3B8YA 1OFLA 4Z06A 1O8KA 1IDKA 3B90A 4XLFA 4XL9A 3WWGA 1RMGA 4URRA 1K5CA 1HG8A 4OJLA 2NT6A 2O1DA 1QCXA 3ZPPA 2NT9A 4YZ0A 4XM3A 4MXNA 1O8JA 1KCDA 2VBEA
chains in the Genus database with same CATH superfamily
4OJOA 1O8LA 4XLCA 2UVFA 1PE9A 3SZEA 3AK5A 1EA0A 4XOTA 4XN0A 5JLVC 1DBGA 2VBMA 2QX3A 4Z05A 3VSVA 2G0YA 1H80A 2PECA 1TYUA 2NTBA 4MR0A 2VJJA 2NTPA 2O6WA 1IB4A 3LYCA 3GQAA 4XOPA 5C1EA 1K4ZA 2IQ7A 2J8IA 1O8GA 4XKWA 1X0CA 1OFMA 4XR6A 4YC5A 3EQNA 1BN8A 1VBLA 3T9GA 4OM9A 1BHEA 1QRCA 2VFNA 4EW9A 5C1CA 2F3LA 1O8FA 2V5IA 2W7ZA 2Z8GA 4OJPA 1QA3A 4W8RA 3PSZA 3VMVA 2NZMA 2XT4A 1JTAA 2QYUA 1TYXA 2VBKA 1O8EA 2BM6A 1IDJA 1O88A 3GQ9A 4NK6A 1RU4A 4YZXA 4XORA 4XMYA 2PYHA 1DBOA 4U4BA 4Z03A 2QY1A 1WMRA 3BH7B 4OZZA 1QQ1A 1QJVA 2BM7A 2BM5A 3FY3A 2BSPA 1KQ5A 4XLHA 4OJ6A 3VSTA 2XTWA 2BX6A 2ODLA 1PXZA 5AMVA 1O8HA 2QXZA 1O8MA 1EZGA 1QA2A 1XG2A 1IA5A 3H09A 4HWVA 1LM1A 4YZQA 3GQ8A 2XT2A 1OFEA 2J8KA 4W8QA 3SUCA 2PYGA 4PMHA 3SQVA 3PSSA 1CLWA 2INVA 2O17A 3UW0A 2XTXA 1KCCA 3BH6B 4U49A 1NHCA 2UVEA 2O0VA 1GQ8A 1AIRA 3SY2A 2NSPA 1HF2A 3KRGA 3N6ZA 4C2LA 4XQFA 4OPWA 2X85A 4W8SA 3JURA 4YEIA 1OGMX 3LJYA 4V02C 4W8TA 1RWRA 3GQ7A 3EQOA 3ML3A 2INUA 4YCQA 3B4NA 3P4GA 1WXRA 3NAWA 2VFQA 3NB2A 1DABA 1PLUA 4YZAA 2VFPA 2XTYA 3VMWA 1EE6A 4XN3A 1KTWA 4OZYA 1LLWA 3LMWA 4XLAA 4YELA 1CZFA 2O04A 3DU1X 4YFOA 4YEJA 4AVZA 1OOCA 1K8FA 3JX8A 1JRGA 2VFMA 2NSTA 3GRHA 1TYVA 2X6XA 2X3HA 3N90A 3ZSCA 4XKVA 4KH3A 3TH0A 2IOUG 4NK8A 4XLEA 1OGOX 1O8DA 4I84A 4YDTA 2VJIA 1TSPA 4XONA 1L1IA 1QRBA 2B0RA 2X6WA 4JRAC 4XNFA 1QA1A 1O8IA 2X6YA 5DNSA 4OJ5A 2O0WA 3PETA 1OFDA 2EWEA 3RIQA 5JMCB 2NTQA 3VSUA 2BM4A 2QZAA 1TYWA 1LLZA 3B8YA 1OFLA 4Z06A 1O8KA 1IDKA 3B90A 4XLFA 4XL9A 3WWGA 1RMGA 4URRA 3SYJA 1K5CA 1HG8A 2VFOA 4OJLA 2NT6A 2O1DA 1QCXA 2YUHA 2NT9A 3ZPPA 4YZ0A 4XM3A 4MXNA 2XC1A 1O8JA 1KCDA 2VBEA
chains in the Genus database with same CATH topology
4OJOA 1O8LA 4XLCA 2UVFA 1PE9A 4XOTA 4XN0A 1DBGA 2VBMA 2QX3A 4Z05A 3VSVA 1H80A 2PECA 2NTBA 4MR0A 2VJJA 2NTPA 1IB4A 3GQAA 4XOPA 5C1EA 2IQ7A 1O8GA 4XKWA 1X0CA 1OFMA 4XR6A 3EQNA 1BN8A 1VBLA 3T9GA 1BHEA 4EW9A 5C1CA 1O8FA 2Z8GA 4OJPA 4W8RA 3VMVA 2NZMA 1JTAA 2VBKA 1O8EA 1IDJA 1O88A 3GQ9A 4NK6A 1RU4A 4YZXA 4XORA 4XMYA 2PYHA 1DBOA 4U4BA 4Z03A 2QY1A 1WMRA 4OZZA 1QJVA 3FY3A 2BSPA 4XLHA 3VSTA 4OJ6A 2ODLA 1PXZA 5AMVA 1O8HA 2QXZA 1O8MA 1XG2A 1IA5A 4HWVA 4YZQA 3GQ8A 4W8QA 3SUCA 2PYGA 4PMHA 2INVA 2O17A 3UW0A 1KCCA 1NHCA 4U49A 2UVEA 2O0VA 1GQ8A 1AIRA 2NSPA 3KRGA 4C2LA 4XQFA 2X85A 4W8SA 3JURA 1OGMX 4W8TA 1RWRA 3GQ7A 3EQOA 2INUA 3B4NA 1PLUA 4YZAA 3VMWA 1EE6A 4XN3A 1KTWA 4OZYA 3LMWA 4XLAA 4YELA 4AVZA 1CZFA 2O04A 4YEJA 1OOCA 1JRGA 2NSTA 3GRHA 2X6XA 2X3HA 3ZSCA 4XKVA 4NK8A 4XLEA 1OGOX 1O8DA 4I84A 2VJIA 4XONA 2X6WA 4XNFA 1O8IA 2X6YA 4OJ5A 2O0WA 2EWEA 2NTQA 3VSUA 3B8YA 1OFLA 4Z06A 1O8KA 1IDKA 3B90A 4XLFA 4XL9A 3WWGA 1RMGA 4URRA 1K5CA 1HG8A 4OJLA 2NT6A 2O1DA 1QCXA 3ZPPA 2NT9A 4YZ0A 4XM3A 4MXNA 1O8JA 1KCDA 2VBEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OJO A;  1O8L A;  4XLC A;  2UVF A;  1PE9 A;  4XOT A;  4XN0 A;  1DBG A;  2VBM A;  2QX3 A;  4Z05 A;  3VSV A;  1H80 A;  2PEC A;  2NTB A;  4MR0 A;  2VJJ A;  2NTP A;  1IB4 A;  3GQA A;  4XOP A;  5C1E A;  2IQ7 A;  1O8G A;  4XKW A;  1X0C A;  1OFM A;  4XR6 A;  3EQN A;  1BN8 A;  1VBL A;  3T9G A;  1BHE A;  4EW9 A;  5C1C A;  1O8F A;  2Z8G A;  4OJP A;  4W8R A;  3VMV A;  2NZM A;  1JTA A;  2VBK A;  1O8E A;  1IDJ A;  1O88 A;  3GQ9 A;  4NK6 A;  1RU4 A;  4YZX A;  4XOR A;  4XMY A;  2PYH A;  1DBO A;  4U4B A;  4Z03 A;  2QY1 A;  1WMR A;  4OZZ A;  1QJV A;  3FY3 A;  2BSP A;  4XLH A;  3VST A;  4OJ6 A;  2ODL A;  1PXZ A;  5AMV A;  1O8H A;  2QXZ A;  1O8M A;  1XG2 A;  1IA5 A;  4HWV A;  4YZQ A;  3GQ8 A;  4W8Q A;  3SUC A;  2PYG A;  4PMH A;  2INV A;  2O17 A;  3UW0 A;  1KCC A;  1NHC A;  4U49 A;  2UVE A;  2O0V A;  1GQ8 A;  1AIR A;  2NSP A;  3KRG A;  4C2L A;  4XQF A;  2X85 A;  4W8S A;  3JUR A;  1OGM X;  4W8T A;  1RWR A;  3GQ7 A;  3EQO A;  2INU A;  3B4N A;  1PLU A;  4YZA A;  3VMW A;  1EE6 A;  4XN3 A;  1KTW A;  4OZY A;  3LMW A;  4XLA A;  4YEL A;  4AVZ A;  1CZF A;  2O04 A;  4YEJ A;  1OOC A;  1JRG A;  2NST A;  3GRH A;  2X6X A;  2X3H A;  3ZSC A;  4XKV A;  4NK8 A;  4XLE A;  1OGO X;  1O8D A;  4I84 A;  2VJI A;  4XON A;  2X6W A;  4XNF A;  1O8I A;  2X6Y A;  4OJ5 A;  2O0W A;  2EWE A;  2NTQ A;  3VSU A;  3B8Y A;  1OFL A;  4Z06 A;  1O8K A;  1IDK A;  3B90 A;  4XLF A;  4XL9 A;  3WWG A;  1RMG A;  4URR A;  1K5C A;  1HG8 A;  4OJL A;  2NT6 A;  2O1D A;  1QCX A;  3ZPP A;  2NT9 A;  4YZ0 A;  4XM3 A;  4MXN A;  1O8J A;  1KCD A;  2VBE A; 
#chains in the Genus database with same CATH topology
 4OJO A;  1O8L A;  4XLC A;  2UVF A;  1PE9 A;  3SZE A;  3AK5 A;  1EA0 A;  4XOT A;  4XN0 A;  5JLV C;  1DBG A;  2VBM A;  2QX3 A;  4Z05 A;  3VSV A;  2G0Y A;  1H80 A;  2PEC A;  1TYU A;  2NTB A;  4MR0 A;  2VJJ A;  2NTP A;  2O6W A;  1IB4 A;  3LYC A;  3GQA A;  4XOP A;  5C1E A;  1K4Z A;  2IQ7 A;  2J8I A;  1O8G A;  4XKW A;  1X0C A;  1OFM A;  4XR6 A;  4YC5 A;  3EQN A;  1BN8 A;  1VBL A;  3T9G A;  4OM9 A;  1BHE A;  1QRC A;  2VFN A;  4EW9 A;  5C1C A;  2F3L A;  1O8F A;  2V5I A;  2W7Z A;  2Z8G A;  4OJP A;  1QA3 A;  4W8R A;  3PSZ A;  3VMV A;  2NZM A;  2XT4 A;  1JTA A;  2QYU A;  1TYX A;  2VBK A;  1O8E A;  2BM6 A;  1IDJ A;  1O88 A;  3GQ9 A;  4NK6 A;  1RU4 A;  4YZX A;  4XOR A;  4XMY A;  2PYH A;  1DBO A;  4U4B A;  4Z03 A;  2QY1 A;  1WMR A;  3BH7 B;  4OZZ A;  1QQ1 A;  1QJV A;  2BM7 A;  2BM5 A;  3FY3 A;  2BSP A;  1KQ5 A;  4XLH A;  4OJ6 A;  3VST A;  2XTW A;  2BX6 A;  2ODL A;  1PXZ A;  5AMV A;  1O8H A;  2QXZ A;  1O8M A;  1EZG A;  1QA2 A;  1XG2 A;  1IA5 A;  3H09 A;  4HWV A;  1LM1 A;  4YZQ A;  3GQ8 A;  2XT2 A;  1OFE A;  2J8K A;  4W8Q A;  3SUC A;  2PYG A;  4PMH A;  3SQV A;  3PSS A;  1CLW A;  2INV A;  2O17 A;  3UW0 A;  2XTX A;  1KCC A;  3BH6 B;  4U49 A;  1NHC A;  2UVE A;  2O0V A;  1GQ8 A;  1AIR A;  3SY2 A;  2NSP A;  1HF2 A;  3KRG A;  3N6Z A;  4C2L A;  4XQF A;  4OPW A;  2X85 A;  4W8S A;  3JUR A;  4YEI A;  1OGM X;  3LJY A;  4V02 C;  4W8T A;  1RWR A;  3GQ7 A;  3EQO A;  3ML3 A;  2INU A;  4YCQ A;  3B4N A;  3P4G A;  1WXR A;  3NAW A;  2VFQ A;  3NB2 A;  1DAB A;  1PLU A;  4YZA A;  2VFP A;  2XTY A;  3VMW A;  1EE6 A;  4XN3 A;  1KTW A;  4OZY A;  1LLW A;  3LMW A;  4XLA A;  4YEL A;  1CZF A;  2O04 A;  3DU1 X;  4YFO A;  4YEJ A;  4AVZ A;  1OOC A;  1K8F A;  3JX8 A;  1JRG A;  2VFM A;  2NST A;  3GRH A;  1TYV A;  2X6X A;  2X3H A;  3N90 A;  3ZSC A;  4XKV A;  4KH3 A;  3TH0 A;  2IOU G;  4NK8 A;  4XLE A;  1OGO X;  1O8D A;  4I84 A;  4YDT A;  2VJI A;  1TSP A;  4XON A;  1L1I A;  1QRB A;  2B0R A;  2X6W A;  4JRA C;  4XNF A;  1QA1 A;  1O8I A;  2X6Y A;  5DNS A;  4OJ5 A;  2O0W A;  3PET A;  1OFD A;  2EWE A;  3RIQ A;  5JMC B;  2NTQ A;  3VSU A;  2BM4 A;  2QZA A;  1TYW A;  1LLZ A;  3B8Y A;  1OFL A;  4Z06 A;  1O8K A;  1IDK A;  3B90 A;  4XLF A;  4XL9 A;  3WWG A;  1RMG A;  4URR A;  3SYJ A;  1K5C A;  1HG8 A;  2VFO A;  4OJL A;  2NT6 A;  2O1D A;  1QCX A;  2YUH A;  2NT9 A;  3ZPP A;  4YZ0 A;  4XM3 A;  4MXN A;  2XC1 A;  1O8J A;  1KCD A;  2VBE A; 
#chains in the Genus database with same CATH homology
 4OJO A;  1O8L A;  4XLC A;  2UVF A;  1PE9 A;  4XOT A;  4XN0 A;  1DBG A;  2VBM A;  2QX3 A;  4Z05 A;  3VSV A;  1H80 A;  2PEC A;  2NTB A;  4MR0 A;  2VJJ A;  2NTP A;  1IB4 A;  3GQA A;  4XOP A;  5C1E A;  2IQ7 A;  1O8G A;  4XKW A;  1X0C A;  1OFM A;  4XR6 A;  3EQN A;  1BN8 A;  1VBL A;  3T9G A;  1BHE A;  4EW9 A;  5C1C A;  1O8F A;  2Z8G A;  4OJP A;  4W8R A;  3VMV A;  2NZM A;  1JTA A;  2VBK A;  1O8E A;  1IDJ A;  1O88 A;  3GQ9 A;  4NK6 A;  1RU4 A;  4YZX A;  4XOR A;  4XMY A;  2PYH A;  1DBO A;  4U4B A;  4Z03 A;  2QY1 A;  1WMR A;  4OZZ A;  1QJV A;  3FY3 A;  2BSP A;  4XLH A;  3VST A;  4OJ6 A;  2ODL A;  1PXZ A;  5AMV A;  1O8H A;  2QXZ A;  1O8M A;  1XG2 A;  1IA5 A;  4HWV A;  4YZQ A;  3GQ8 A;  4W8Q A;  3SUC A;  2PYG A;  4PMH A;  2INV A;  2O17 A;  3UW0 A;  1KCC A;  1NHC A;  4U49 A;  2UVE A;  2O0V A;  1GQ8 A;  1AIR A;  2NSP A;  3KRG A;  4C2L A;  4XQF A;  2X85 A;  4W8S A;  3JUR A;  1OGM X;  4W8T A;  1RWR A;  3GQ7 A;  3EQO A;  2INU A;  3B4N A;  1PLU A;  4YZA A;  3VMW A;  1EE6 A;  4XN3 A;  1KTW A;  4OZY A;  3LMW A;  4XLA A;  4YEL A;  4AVZ A;  1CZF A;  2O04 A;  4YEJ A;  1OOC A;  1JRG A;  2NST A;  3GRH A;  2X6X A;  2X3H A;  3ZSC A;  4XKV A;  4NK8 A;  4XLE A;  1OGO X;  1O8D A;  4I84 A;  2VJI A;  4XON A;  2X6W A;  4XNF A;  1O8I A;  2X6Y A;  4OJ5 A;  2O0W A;  2EWE A;  2NTQ A;  3VSU A;  3B8Y A;  1OFL A;  4Z06 A;  1O8K A;  1IDK A;  3B90 A;  4XLF A;  4XL9 A;  3WWG A;  1RMG A;  4URR A;  1K5C A;  1HG8 A;  4OJL A;  2NT6 A;  2O1D A;  1QCX A;  3ZPP A;  2NT9 A;  4YZ0 A;  4XM3 A;  4MXN A;  1O8J A;  1KCD A;  2VBE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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