4IAUA

Atomic resolution structure of geodin, a beta-gamma crystallin from geodia cydonium
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
161
structure length
161
Chain Sequence
STAKVTLVTSGGSSQDFTSEQTNITTDFARVRVTKGMWIFYQQANYNDASGGGSLWIKLDESSHLMDLPFTPRSFRPVKTFQVGATLYKHVNFGGKELDLPNSNPRIDIGGVSSALISQGQWRLYEQYDYAGPSTRRGPGVYVNAGALGVANDALKSMERE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Beta-gamma-crystallin
publication title A novel interdomain interface in crystallins: structural characterization of the [beta][gamma]-crystallin from Geodia cydonium at 0.99 A resolution
pubmed doi rcsb
source organism Geodia cydonium
total genus 43
structure length 161
sequence length 161
ec nomenclature
pdb deposition date 2012-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 4iauA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 4iauA01
1GCSA 1ELPA 3CW3A 2BV2A 1HDFA 1HK0X 2G98A 1I5IA 1YTQA 2V2UA 1ZIRA 1YHPA 4PSRA 1OKIA 2K1XA 2DADA 1A5DA 1AG4A 1BLBA 1PRRA 3ENUA 4NI3A 1M8UA 1AMMA 1HA4A 3HZBA 1ZWMA 4GR7A 4AKAA 4FD9A 2NBRA 4JGFA 3SO1A 3QK3A 1ZGTA 4PSPA 2M3CA 1H4AX 1ZIQA 1GAMA 1A45A 2A5MA 3IAJA 3SNZA 4IAUA 2M3UA 1BD7A 3I9HA 4EL6A 5HT8A 1ZIEA 1ZWOA 2M3TA 3SNYA 1A7HA 2KFBA 2JDFA 5HT9A 1E7NA 1PRSA 3HZ2A 4GCRA 2BB2A 1DSLA 3ENTA 3LWKA 4W9AA 4W9BA 3SO0A 2B1OA 2K1WA 2JDGA 1NPSA 2KP5A
chains in the Genus database with same CATH superfamily
1ELPA 3CW3A 2BV2A 2G98A 1BLBA 4NI3A 1AMMA 4GR7A 4FD9A 3QK3A 1ZIQA 3SNZA 1ZWOA 1PRSA 3ENUA 3LWKA 1BHUA 1OKIA 2DADA 1PRRA 3HZBA 4PSPA 1H4AX 1A45A 3IAJA 1BD7A 4EL6A 5HT8A 1A7HA 3HZ2A 4W9BA 1GH5A 1NPSA 1GCSA 1G6EA 1I5IA 2K1XA 1A5DA 1M8UA 1HA4A 1ZWMA 4JGFA 1ZGTA 1GAMA 4IAUA 2M3UA 2M3TA 3SNYA 2JDFA 5HT9A 1E7NA 4GCRA 1C01A 2BB2A 1DSLA 4W9AA 2B1OA 2JDGA 1HDFA 1HK0X 2V2UA 1YTQA 1ZIRA 1YHPA 4PSRA 1AG4A 4AKAA 2NBRA 1WKTA 3SO1A 2M3CA 2A5MA 3I9HA 1F53A 1ZIEA 2KFBA 3UJZA 3ENTA 3SO0A 2K1WA 2KP5A
chains in the Genus database with same CATH topology
1GCSA 1ELPA 3CW3A 2BV2A 1HDFA 1HK0X 2G98A 1I5IA 1YTQA 2V2UA 1ZIRA 1YHPA 4PSRA 1OKIA 2K1XA 2DADA 1A5DA 1AG4A 1BLBA 1PRRA 3ENUA 4NI3A 1M8UA 1AMMA 1HA4A 3HZBA 1ZWMA 4GR7A 4AKAA 4FD9A 2NBRA 4JGFA 3SO1A 3QK3A 1ZGTA 4PSPA 2M3CA 1H4AX 1ZIQA 1GAMA 1A45A 2A5MA 3IAJA 3SNZA 4IAUA 2M3UA 1BD7A 3I9HA 4EL6A 5HT8A 1ZIEA 1ZWOA 2M3TA 3SNYA 1A7HA 2KFBA 2JDFA 5HT9A 1E7NA 1PRSA 3HZ2A 4GCRA 2BB2A 1DSLA 3ENTA 3LWKA 4W9AA 4W9BA 3SO0A 2B1OA 2K1WA 2JDGA 1NPSA 2KP5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GCS A;  1ELP A;  3CW3 A;  2BV2 A;  1HDF A;  1HK0 X;  2G98 A;  1I5I A;  1YTQ A;  2V2U A;  1ZIR A;  1YHP A;  4PSR A;  1OKI A;  2K1X A;  2DAD A;  1A5D A;  1AG4 A;  1BLB A;  1PRR A;  3ENU A;  4NI3 A;  1M8U A;  1AMM A;  1HA4 A;  3HZB A;  1ZWM A;  4GR7 A;  4AKA A;  4FD9 A;  2NBR A;  4JGF A;  3SO1 A;  3QK3 A;  1ZGT A;  4PSP A;  2M3C A;  1H4A X;  1ZIQ A;  1GAM A;  1A45 A;  2A5M A;  3IAJ A;  3SNZ A;  4IAU A;  2M3U A;  1BD7 A;  3I9H A;  4EL6 A;  5HT8 A;  1ZIE A;  1ZWO A;  2M3T A;  3SNY A;  1A7H A;  2KFB A;  2JDF A;  5HT9 A;  1E7N A;  1PRS A;  3HZ2 A;  4GCR A;  2BB2 A;  1DSL A;  3ENT A;  3LWK A;  4W9A A;  4W9B A;  3SO0 A;  2B1O A;  2K1W A;  2JDG A;  1NPS A;  2KP5 A; 
#chains in the Genus database with same CATH topology
 1ELP A;  3CW3 A;  2BV2 A;  2G98 A;  1BLB A;  4NI3 A;  1AMM A;  4GR7 A;  4FD9 A;  3QK3 A;  1ZIQ A;  3SNZ A;  1ZWO A;  1PRS A;  3ENU A;  3LWK A;  1BHU A;  1OKI A;  2DAD A;  1PRR A;  3HZB A;  4PSP A;  1H4A X;  1A45 A;  3IAJ A;  1BD7 A;  4EL6 A;  5HT8 A;  1A7H A;  3HZ2 A;  4W9B A;  1GH5 A;  1NPS A;  1GCS A;  1G6E A;  1I5I A;  2K1X A;  1A5D A;  1M8U A;  1HA4 A;  1ZWM A;  4JGF A;  1ZGT A;  1GAM A;  4IAU A;  2M3U A;  2M3T A;  3SNY A;  2JDF A;  5HT9 A;  1E7N A;  4GCR A;  1C01 A;  2BB2 A;  1DSL A;  4W9A A;  2B1O A;  2JDG A;  1HDF A;  1HK0 X;  2V2U A;  1YTQ A;  1ZIR A;  1YHP A;  4PSR A;  1AG4 A;  4AKA A;  2NBR A;  1WKT A;  3SO1 A;  2M3C A;  2A5M A;  3I9H A;  1F53 A;  1ZIE A;  2KFB A;  3UJZ A;  3ENT A;  3SO0 A;  2K1W A;  2KP5 A; 
#chains in the Genus database with same CATH homology
 1GCS A;  1ELP A;  3CW3 A;  2BV2 A;  1HDF A;  1HK0 X;  2G98 A;  1I5I A;  1YTQ A;  2V2U A;  1ZIR A;  1YHP A;  4PSR A;  1OKI A;  2K1X A;  2DAD A;  1A5D A;  1AG4 A;  1BLB A;  1PRR A;  3ENU A;  4NI3 A;  1M8U A;  1AMM A;  1HA4 A;  3HZB A;  1ZWM A;  4GR7 A;  4AKA A;  4FD9 A;  2NBR A;  4JGF A;  3SO1 A;  3QK3 A;  1ZGT A;  4PSP A;  2M3C A;  1H4A X;  1ZIQ A;  1GAM A;  1A45 A;  2A5M A;  3IAJ A;  3SNZ A;  4IAU A;  2M3U A;  1BD7 A;  3I9H A;  4EL6 A;  5HT8 A;  1ZIE A;  1ZWO A;  2M3T A;  3SNY A;  1A7H A;  2KFB A;  2JDF A;  5HT9 A;  1E7N A;  1PRS A;  3HZ2 A;  4GCR A;  2BB2 A;  1DSL A;  3ENT A;  3LWK A;  4W9A A;  4W9B A;  3SO0 A;  2B1O A;  2K1W A;  2JDG A;  1NPS A;  2KP5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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