4ICGC

N-terminal dimerization domain of h-ns in complex with hha (salmonella typhimurium)
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
67
structure length
67
Chain Sequence
LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
source organism Salmonella enterica subsp. enterica serovar typhimurium str. lt2
publication title Structural Insights into the Regulation of Foreign Genes in Salmonella by the Hha/H-NS Complex.
pubmed doi rcsb
molecule keywords DNA-binding protein H-NS
total genus 14
structure length 67
sequence length 67
chains with identical sequence D
ec nomenclature
pdb deposition date 2012-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF05321 HHA Haemolysin expression modulating protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.40 Mainly Alpha Up-down Bundle Monooxygenase HHA 4icgC00
2K5SA 1JW2A 2JQTA 4ICGC 2MW2A
chains in the Genus database with same CATH superfamily
3V7DB 1Q9XA 4FJGA 3NHGA 4J2DA 2RKHA 1FZ8E 4DTUA 3SQ4A 3SI6A 3RMAA 1FYZE 4DU3A 3LZJA 1XMHE 4M3RA 4FK4A 3BVOA 4M3TA 4DTOA 1N1CA 1XVBE 4KHNA 4KHSA 1XL3C 2B7MA 2VJ5A 4FJ5A 3OGMB 1FZHE 1NEXB 1CLQA 4B08A 3TAFA 2DY4A 1XMFE 3C6OB 3C6PB 3SNNA 3QESA 4FK0A 2RCUA 2JHPA 5IZ7A 4DTNA 1IG9A 5IBKB 1MMOG 4HCBA 4M3WA 3CFPA 4M42A 4DTXA 1JW2A 2HD0A 3NE6A 2H4TA 3SJJA 3C94A 2P1NB 3N1BA 4J2BA 2P1QB 2E32A 4QNCA 3SPZA 4JS4A 4DTJA 1XVDE 3E4YA 5H37A 1WAJA 3HL8A 3RWUA 1XU3E 4JS5A 1XVGE 1FZIE 3HGKE 3S9HA 4FVMA 2LF3A 2OVPB 4FJ8A 3N1EA 1MHYG 2P1OB 4DTRA 1MTYG 4ADNA 4M41A 3L2OB 2FYOA 3MKSB 3QEXA 3TAGA 4I9QA 4GAMC 2DTUA 4IT5A 4RNGA 4AKHA 2JHAA 4KHQA 3NAEA 3SUQA 3SCXA 2DEBA 3NDKA 2P5GA 2JH9A 3WSOA 4FJ7A 4FK2A 1XVFE 4J2AA 5IREA 2E31A 3TABA 2JH8A 3RMBA 4DTPA 3TL8B 4KHUA 4E3SA 3QEVA 2JQTA 4AI6A 1FS1A 4AKIA 2YB5A 1MHZG 1IH7A 1XMGE 3LDSA 2JPNA 1XVCE 3UO3A 3CQ8A 4FJJA 1FZ4E 3SQ0A 4FJXA 1FZ5E 4RL5A 3C6NB 3UO2A 1FZ0E 1FXXA 3LD8A 3LDBA 3RMDA 4EYWA 2P5OA 1LDKE 4KHYA 3QETA 3QERA 3HGLA 4FJLA 1Q9YA 4EP9A 4RG8A 2OZMA 4JRQA 2MMBA 4FJMA 1FZ9E 4M3ZA 3KD5E 3KD1E 4QNDA 4FJ9A 3CFOA 4JRPA 3QNNA 3SQ1A 3TJYA 3QEIA 1XU5E 4M45A 4DU4A 4AKGA 3NCIA 4ICGC 4FJNA 1FZ7E 3NGIA 3QEPA 2OZSA 4DTSA 4HCCA 4KHWA 4X5NA 2P1PB 3TAEA 4M3XA 3SUNA 4M3UA 1XVEE 2JHCA 2K5SA 4J2EA 4KI4A 1WAFA 3CFRA 3LZIA 3SUOA 2P1MB 3QNOA 2PFVA 3E4WA 2MW2A 3L0MA 2OVQB 2QXFA 2B1EA 3RMCA 3SPYA 4DU1A 4FJKA 4KI6A 4X5MA 3OGLB 4FJIA 4FJHA 1FZ1E 2OVRB 2VJ4A 1FZ2E 2B8IA 3HP9A 4EPHA 2ATQA 2VIXA 1FZ3E 2LF6A 3SVIA 2OYQA 4M3YA 1FPOA 2PFTA 3L1NA 3SQ2A 3OGKB 4I6JB 2FW3A 4DTMA 3SUPA 3J2PA 3C95A 3L8BA 3QEWA 4I9LA 1P22A 2MZWB 3J27A 3UIQA 4E4BA 4ADOA 3K2OA 1FZ6E
chains in the Genus database with same CATH topology
2K5SA 1JW2A 2JQTA 4ICGC 2MW2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K5S A;  1JW2 A;  2JQT A;  4ICG C;  2MW2 A; 
#chains in the Genus database with same CATH topology
 3V7D B;  1Q9X A;  4FJG A;  3NHG A;  4J2D A;  2RKH A;  1FZ8 E;  4DTU A;  3SQ4 A;  3SI6 A;  3RMA A;  1FYZ E;  4DU3 A;  3LZJ A;  1XMH E;  4M3R A;  4FK4 A;  3BVO A;  4M3T A;  4DTO A;  1N1C A;  1XVB E;  4KHN A;  4KHS A;  1XL3 C;  2B7M A;  2VJ5 A;  4FJ5 A;  3OGM B;  1FZH E;  1NEX B;  1CLQ A;  4B08 A;  3TAF A;  2DY4 A;  1XMF E;  3C6O B;  3C6P B;  3SNN A;  3QES A;  4FK0 A;  2RCU A;  2JHP A;  5IZ7 A;  4DTN A;  1IG9 A;  5IBK B;  1MMO G;  4HCB A;  4M3W A;  3CFP A;  4M42 A;  4DTX A;  1JW2 A;  2HD0 A;  3NE6 A;  2H4T A;  3SJJ A;  3C94 A;  2P1N B;  3N1B A;  4J2B A;  2P1Q B;  2E32 A;  4QNC A;  3SPZ A;  4JS4 A;  4DTJ A;  1XVD E;  3E4Y A;  5H37 A;  1WAJ A;  3HL8 A;  3RWU A;  1XU3 E;  4JS5 A;  1XVG E;  1FZI E;  3HGK E;  3S9H A;  4FVM A;  2LF3 A;  2OVP B;  4FJ8 A;  3N1E A;  1MHY G;  2P1O B;  4DTR A;  1MTY G;  4ADN A;  4M41 A;  3L2O B;  2FYO A;  3MKS B;  3QEX A;  3TAG A;  4I9Q A;  4GAM C;  2DTU A;  4IT5 A;  4RNG A;  4AKH A;  2JHA A;  4KHQ A;  3NAE A;  3SUQ A;  3SCX A;  2DEB A;  3NDK A;  2P5G A;  2JH9 A;  3WSO A;  4FJ7 A;  4FK2 A;  1XVF E;  4J2A A;  5IRE A;  2E31 A;  3TAB A;  2JH8 A;  3RMB A;  4DTP A;  3TL8 B;  4KHU A;  4E3S A;  3QEV A;  2JQT A;  4AI6 A;  1FS1 A;  4AKI A;  2YB5 A;  1MHZ G;  1IH7 A;  1XMG E;  3LDS A;  2JPN A;  1XVC E;  3UO3 A;  3CQ8 A;  4FJJ A;  1FZ4 E;  3SQ0 A;  4FJX A;  1FZ5 E;  4RL5 A;  3C6N B;  3UO2 A;  1FZ0 E;  1FXX A;  3LD8 A;  3LDB A;  3RMD A;  4EYW A;  2P5O A;  1LDK E;  4KHY A;  3QET A;  3QER A;  3HGL A;  4FJL A;  1Q9Y A;  4EP9 A;  4RG8 A;  2OZM A;  4JRQ A;  2MMB A;  4FJM A;  1FZ9 E;  4M3Z A;  3KD5 E;  3KD1 E;  4QND A;  4FJ9 A;  3CFO A;  4JRP A;  3QNN A;  3SQ1 A;  3TJY A;  3QEI A;  1XU5 E;  4M45 A;  4DU4 A;  4AKG A;  3NCI A;  4ICG C;  4FJN A;  1FZ7 E;  3NGI A;  3QEP A;  2OZS A;  4DTS A;  4HCC A;  4KHW A;  4X5N A;  2P1P B;  3TAE A;  4M3X A;  3SUN A;  4M3U A;  1XVE E;  2JHC A;  2K5S A;  4J2E A;  4KI4 A;  1WAF A;  3CFR A;  3LZI A;  3SUO A;  2P1M B;  3QNO A;  2PFV A;  3E4W A;  2MW2 A;  3L0M A;  2OVQ B;  2QXF A;  2B1E A;  3RMC A;  3SPY A;  4DU1 A;  4FJK A;  4KI6 A;  4X5M A;  3OGL B;  4FJI A;  4FJH A;  1FZ1 E;  2OVR B;  2VJ4 A;  1FZ2 E;  2B8I A;  3HP9 A;  4EPH A;  2ATQ A;  2VIX A;  1FZ3 E;  2LF6 A;  3SVI A;  2OYQ A;  4M3Y A;  1FPO A;  2PFT A;  3L1N A;  3SQ2 A;  3OGK B;  4I6J B;  2FW3 A;  4DTM A;  3SUP A;  3J2P A;  3C95 A;  3L8B A;  3QEW A;  4I9L A;  1P22 A;  2MZW B;  3J27 A;  3UIQ A;  4E4B A;  4ADO A;  3K2O A;  1FZ6 E; 
#chains in the Genus database with same CATH homology
 2K5S A;  1JW2 A;  2JQT A;  4ICG C;  2MW2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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