4IIPA

Legionella pneumophila effector
Total Genus 102
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
315
structure length
305
Chain Sequence
MRSIITQICNGVLHGQSYQSGSNDLDKGNSEIFASSLFVHLNEQGKEIKDSDDKIVIGYTKDGMAFQIVVAGFYGCERQAVFSFIDNYVLPLIDNFSLDLTRYPDSKKVTESLIHTIYSLRSKHAPLAEFTMSLCVTYQKDEQLFCAGFGIGDTGIAIKRNEGTIEQLVCHTEVDGFKDAFDNYSSANIDLVIERNSVFNTKVMPGDELVGYTYVPPMLEMTEKEFEVETKRIVRHLNLDPGNFDDKDPLFSQLLQVVKSKQKQLVEQAKETGQIQRFGDDFTVGRLVIPDQLLINQLRIHALSH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Adenosine monophosphate-protein hydrolase SidD
publication title Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD
pubmed doi rcsb
source organism Legionella pneumophila
total genus 102
structure length 305
sequence length 315
ec nomenclature ec 3.1.4.-:
pdb deposition date 2012-12-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.20 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 Phosphatase 2c; domain 1 4iipA00
4IIKA 4IIPA
chains in the Genus database with same CATH superfamily
1A6QA 1TXOA 3PU9A 5F1MA 3ZT9A 3F79A 4OICB 3FXMA 3D8KA 3W43A 2ISNA 2JFSA 4RAFA 2J86A 4IIKA 3FXKA 3T91A 2XZVA 4JNDA 3ZVUB 3W41A 3NMVB 3NMTB 4RA2A 2JFTA 3W44A 4WVOB 4RAGA 4IIPA 3KE6A 3FXJA 2POMA 2CM1A 3T9QA 5JO2B 2POPA 4LA7B 3RNRA 3JRQA 4LG5B 2I0OA 3UJGB 3FXOA 5JO1B 5ITIA 3N3CA 2JFRA 3EQ2A 4YZHA 3ES2A 3UJKA 3W40A 3QN1B 2J4OA 4LGAB 3FXLA 4LGBB 2V06A 3MQ3A 2J82A 4YZGA 3W45A 3W42A 2IQ1A 3UJLB 2PK0A 3NMNB 2P8EA 4DA1A 2I44A 2IRMA 4DS8B 2PNQA 3KDJB 4N0GA 5D2UA 2Y09A 3KB3B 3RT0A
chains in the Genus database with same CATH topology
4IIKA 4IIPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IIK A;  4IIP A; 
#chains in the Genus database with same CATH topology
 1A6Q A;  1TXO A;  3PU9 A;  5F1M A;  3ZT9 A;  3F79 A;  4OIC B;  3FXM A;  3D8K A;  3W43 A;  2ISN A;  2JFS A;  4RAF A;  2J86 A;  4IIK A;  3FXK A;  3T91 A;  2XZV A;  4JND A;  3ZVU B;  3W41 A;  3NMV B;  3NMT B;  4RA2 A;  2JFT A;  3W44 A;  4WVO B;  4RAG A;  4IIP A;  3KE6 A;  3FXJ A;  2POM A;  2CM1 A;  3T9Q A;  5JO2 B;  2POP A;  4LA7 B;  3RNR A;  3JRQ A;  4LG5 B;  2I0O A;  3UJG B;  3FXO A;  5JO1 B;  5ITI A;  3N3C A;  2JFR A;  3EQ2 A;  4YZH A;  3ES2 A;  3UJK A;  3W40 A;  3QN1 B;  2J4O A;  4LGA B;  3FXL A;  4LGB B;  2V06 A;  3MQ3 A;  2J82 A;  4YZG A;  3W45 A;  3W42 A;  2IQ1 A;  3UJL B;  2PK0 A;  3NMN B;  2P8E A;  4DA1 A;  2I44 A;  2IRM A;  4DS8 B;  2PNQ A;  3KDJ B;  4N0G A;  5D2U A;  2Y09 A;  3KB3 B;  3RT0 A; 
#chains in the Genus database with same CATH homology
 4IIK A;  4IIP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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