4IL8A

Crystal structure of an h329a mutant of p. aeruginosa pmm/pgm
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
459
structure length
458
Chain Sequence
KAPTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGAVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
source organism Pseudomonas aeruginosa
publication title Identification of an essential active-site residue in the alpha-D-phosphohexomutase enzyme superfamily.
pubmed doi rcsb
molecule keywords Phosphomannomutase/phosphoglucomutase
total genus 172
structure length 458
sequence length 459
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2012-12-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 4il8A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4il8A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4il8A01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4il8A02
4BJUA 2EIUA 3I3WA 4QG5A 2FKFA 4WX8A 2F7LA 2H4LX 5BMPA 5JMVD 1JDYA 1WJWA 1KFQA 2H5AX 2JPIA 1C47A 3PDKA 3ENCA 1VKLA 2DKDA 1P5DX 1K2YX 1LXTA 1P5GX 5JN5A 3BKQX 1KFIA 1WQAA 3PMGA 2DKCA 1K35A 2FKMX 2DKAA 2Z0FA 3NA5A 4IL8A 1TUOA 5KL0A 1C4GA 4HJHA 3C04A 4WXAA 5F9CA 5BMNA 2FUVA 4MRQA 1PCMX 3ENOC 5EPCA 5HSHA 1PCJX 3OLPA 3RSMA 2EHPA 3UW2A
chains in the Genus database with same CATH superfamily
4EAJA 2EIUA 1TBAB 2HZSA 4EAIA 3CWSA 2FKFA 1NH2A 2O3OA 2MZ8A 1QN7A 1UT7A 1MP9A 2H4LX 1N3CA 4WZSD 2NOZA 3RPJA 2QRCA 1KYUA 2H5AX 1M5Q1 2I5WA 1UT4A 1YTBA 1VKLA 4TPSA 1NVPA 4C7PA 1LWYA 1P5GX 5JN5A 2NOBA 3BKQX 1CDWA 1C9BB 1PZDA 2QREA 1K35A 1KY6A 1PCZA 2FKMX 2Z0FA 4CFFA 4EJZA 3C04A 4WXAA 1KO9A 3D7QA 5F9CA 3OSEA 3OH9A 1T6AA 1FN7A 3ENOC 1VOLB 5IYDP 3H1ZA 3DPUA 1QN6A 1MPGA 3OCIA 5JMVD 4I8OA 3I3WA 3CVSA 1QN9A 3OH6A 3KTUA 4WX8A 3TDHA 3EIKA 4D7QA 2F7LA 1EBMA 2D0AA 1YQMA 2NOEA 2Y8LA 3F0ZA 1DIZA 1JDYA 2JHJA 1UL7A 2JPIA 4DULA 1C47A 1E42A 1TBPA 3T4NA 1QTPA 1M3HA 1QNEA 2PWWA 1LWVA 1YQKA 4EJYA 4EAKA 3NA5A 4IL8A 1R4XA 1TUOA 3HS9A 4Q11A 2HL8A 4ROEB 3CWAA 4MRQA 2NOHA 1KYFA 2QLVA 5EPCA 5HSHA 2IV9A 1J3MA 4EAGA 2EHPA 1QTSA 3UW2A 5IYBP 4BJUA 1YTFA 4QG5A 2OOYA 2NVMA 3CVTA 2VJ0A 1QN4A 2JHNA 1WJWA 1PVSA 1KFQA 2V9JA 3N89A 1QN5A 3ULXA 3HS8A 1N39A 3OGDA 1EUVA 1KFIA 1WQAA 3VN5A 1RM1A 2NOLA 3OC3C 2DKAA 3I0XA 3CW7A 2LAEA 4ROCB 2HZMA 3IH7A 5KL0A 1C4GA 1Q9UA 4HJHA 1LWWA 3SNSA 2D0CA 2V8QA 4D7RA 5BMNA 2NOIA 1JFIC 4PY5A 2HKPA 1NGMA 3OLPA 3OSTA 3RSMA 1VTOA 1YQLA 1AISA 3KRMA 2HL9A 1QNCA 1QNAA 3CWTA 1W80A 2ZFDB 2D0BA 5BMPA 2OOXA 1QN3A 3CWUA 1YQRA 2IV8A 1V5SA 3DPTA 3PDKA 3ENCA 2DKDA 1D3UA 2YA3A 1K2YX 1P5DX 2NLVA 2NOFA 1LXTA 2R5XA 1VOKA 3OSMA 5IYCP 1VTLE 1M3QA 3I0WA 1KY7A 2JOIA 2V92A 3F10A 3PMGA 4EALA 2DKCA 2XHIA 1KYDA 2MJ7A 2FGTA 4B0AA 1QN8A 3TE5A 1B9KA 4RODB 2EHBD 2YH5A 2Y8QA 3ASMA 2G30A 2NWVA 1XSZA 1HU0A 1N3AA 1QNBA 2FUVA 1PCMX 5AN4A 3D4VA 1TGHA 2QRDA 1PCJX 2Z8UA 3EAYA 2QR1A
chains in the Genus database with same CATH topology
4BJUA 2EIUA 3I3WA 4QG5A 2FKFA 4WX8A 2F7LA 2H4LX 5BMPA 5JMVD 1JDYA 1WJWA 1KFQA 2H5AX 2JPIA 1C47A 3PDKA 3ENCA 1VKLA 2DKDA 1P5DX 1K2YX 1LXTA 1P5GX 5JN5A 3BKQX 1KFIA 1WQAA 3PMGA 2DKCA 1K35A 2FKMX 2DKAA 2Z0FA 3NA5A 4IL8A 1TUOA 5KL0A 1C4GA 4HJHA 3C04A 4WXAA 5F9CA 5BMNA 2FUVA 4MRQA 1PCMX 3ENOC 5EPCA 5HSHA 1PCJX 3OLPA 3RSMA 2EHPA 3UW2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BJU A;  2EIU A;  3I3W A;  4QG5 A;  2FKF A;  4WX8 A;  2F7L A;  2H4L X;  5BMP A;  5JMV D;  1JDY A;  1WJW A;  1KFQ A;  2H5A X;  2JPI A;  1C47 A;  3PDK A;  3ENC A;  1VKL A;  2DKD A;  1P5D X;  1K2Y X;  1LXT A;  1P5G X;  5JN5 A;  3BKQ X;  1KFI A;  1WQA A;  3PMG A;  2DKC A;  1K35 A;  2FKM X;  2DKA A;  2Z0F A;  3NA5 A;  4IL8 A;  1TUO A;  5KL0 A;  1C4G A;  4HJH A;  3C04 A;  4WXA A;  5F9C A;  5BMN A;  2FUV A;  4MRQ A;  1PCM X;  3ENO C;  5EPC A;  5HSH A;  1PCJ X;  3OLP A;  3RSM A;  2EHP A;  3UW2 A; 
#chains in the Genus database with same CATH topology
 4EAJ A;  2EIU A;  1TBA B;  2HZS A;  4EAI A;  3CWS A;  2FKF A;  1NH2 A;  2O3O A;  2MZ8 A;  1QN7 A;  1UT7 A;  1MP9 A;  2H4L X;  1N3C A;  4WZS D;  2NOZ A;  3RPJ A;  2QRC A;  1KYU A;  2H5A X;  1M5Q 1;  2I5W A;  1UT4 A;  1YTB A;  1VKL A;  4TPS A;  1NVP A;  4C7P A;  1LWY A;  1P5G X;  5JN5 A;  2NOB A;  3BKQ X;  1CDW A;  1C9B B;  1PZD A;  2QRE A;  1K35 A;  1KY6 A;  1PCZ A;  2FKM X;  2Z0F A;  4CFF A;  4EJZ A;  3C04 A;  4WXA A;  1KO9 A;  3D7Q A;  5F9C A;  3OSE A;  3OH9 A;  1T6A A;  1FN7 A;  3ENO C;  1VOL B;  5IYD P;  3H1Z A;  3DPU A;  1QN6 A;  1MPG A;  3OCI A;  5JMV D;  4I8O A;  3I3W A;  3CVS A;  1QN9 A;  3OH6 A;  3KTU A;  4WX8 A;  3TDH A;  3EIK A;  4D7Q A;  2F7L A;  1EBM A;  2D0A A;  1YQM A;  2NOE A;  2Y8L A;  3F0Z A;  1DIZ A;  1JDY A;  2JHJ A;  1UL7 A;  2JPI A;  4DUL A;  1C47 A;  1E42 A;  1TBP A;  3T4N A;  1QTP A;  1M3H A;  1QNE A;  2PWW A;  1LWV A;  1YQK A;  4EJY A;  4EAK A;  3NA5 A;  4IL8 A;  1R4X A;  1TUO A;  3HS9 A;  4Q11 A;  2HL8 A;  4ROE B;  3CWA A;  4MRQ A;  2NOH A;  1KYF A;  2QLV A;  5EPC A;  5HSH A;  2IV9 A;  1J3M A;  4EAG A;  2EHP A;  1QTS A;  3UW2 A;  5IYB P;  4BJU A;  1YTF A;  4QG5 A;  2OOY A;  2NVM A;  3CVT A;  2VJ0 A;  1QN4 A;  2JHN A;  1WJW A;  1PVS A;  1KFQ A;  2V9J A;  3N89 A;  1QN5 A;  3ULX A;  3HS8 A;  1N39 A;  3OGD A;  1EUV A;  1KFI A;  1WQA A;  3VN5 A;  1RM1 A;  2NOL A;  3OC3 C;  2DKA A;  3I0X A;  3CW7 A;  2LAE A;  4ROC B;  2HZM A;  3IH7 A;  5KL0 A;  1C4G A;  1Q9U A;  4HJH A;  1LWW A;  3SNS A;  2D0C A;  2V8Q A;  4D7R A;  5BMN A;  2NOI A;  1JFI C;  4PY5 A;  2HKP A;  1NGM A;  3OLP A;  3OST A;  3RSM A;  1VTO A;  1YQL A;  1AIS A;  3KRM A;  2HL9 A;  1QNC A;  1QNA A;  3CWT A;  1W80 A;  2ZFD B;  2D0B A;  5BMP A;  2OOX A;  1QN3 A;  3CWU A;  1YQR A;  2IV8 A;  1V5S A;  3DPT A;  3PDK A;  3ENC A;  2DKD A;  1D3U A;  2YA3 A;  1K2Y X;  1P5D X;  2NLV A;  2NOF A;  1LXT A;  2R5X A;  1VOK A;  3OSM A;  5IYC P;  1VTL E;  1M3Q A;  3I0W A;  1KY7 A;  2JOI A;  2V92 A;  3F10 A;  3PMG A;  4EAL A;  2DKC A;  2XHI A;  1KYD A;  2MJ7 A;  2FGT A;  4B0A A;  1QN8 A;  3TE5 A;  1B9K A;  4ROD B;  2EHB D;  2YH5 A;  2Y8Q A;  3ASM A;  2G30 A;  2NWV A;  1XSZ A;  1HU0 A;  1N3A A;  1QNB A;  2FUV A;  1PCM X;  5AN4 A;  3D4V A;  1TGH A;  2QRD A;  1PCJ X;  2Z8U A;  3EAY A;  2QR1 A; 
#chains in the Genus database with same CATH homology
 4BJU A;  2EIU A;  3I3W A;  4QG5 A;  2FKF A;  4WX8 A;  2F7L A;  2H4L X;  5BMP A;  5JMV D;  1JDY A;  1WJW A;  1KFQ A;  2H5A X;  2JPI A;  1C47 A;  3PDK A;  3ENC A;  1VKL A;  2DKD A;  1P5D X;  1K2Y X;  1LXT A;  1P5G X;  5JN5 A;  3BKQ X;  1KFI A;  1WQA A;  3PMG A;  2DKC A;  1K35 A;  2FKM X;  2DKA A;  2Z0F A;  3NA5 A;  4IL8 A;  1TUO A;  5KL0 A;  1C4G A;  4HJH A;  3C04 A;  4WXA A;  5F9C A;  5BMN A;  2FUV A;  4MRQ A;  1PCM X;  3ENO C;  5EPC A;  5HSH A;  1PCJ X;  3OLP A;  3RSM A;  2EHP A;  3UW2 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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