4IL8A

Crystal structure of an h329a mutant of p. aeruginosa pmm/pgm
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
459
structure length
458
Chain Sequence
b'KAPTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGAVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Identification of an essential active-site residue in the alpha-D-phosphohexomutase enzyme superfamily.
pubmed doi rcsb
molecule keywords Phosphomannomutase/phosphoglucomutase
source organism Pseudomonas aeruginosa
molecule tags Isomerase
total genus 172
structure length 458
sequence length 459
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2012-12-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 4il8A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4il8A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4il8A01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4il8A02
4HJHA 5BMPA 1P5DX 3I3WA 1C4GA 1K2YX 3BKQX 1K35A 5KL0A 2DKCA 5BMNA 1KFQA 2EIUA 1KFIA 1WQAA 3NA5A 4BJUA 5F9CA 2EHPA 5JMVD 3PDKA 1PCJX 2JPIA 1PCMX 3ENOC 3PMGA 4WX8A 5HSHA 2FKFA 3ENCA 5EPCA 1VKLA 4WXAA 3C04A 2DKAA 1LXTA 2H5AX 3RSMA 3UW2A 2DKDA 2FKMX 2FUVA 2H4LX 1TUOA 1WJWA 2Z0FA 3OLPA 5JN5A 1C47A 4QG5A 1JDYA 4MRQA 2F7LA 4IL8A 1P5GX
chains in the Genus database with same CATH superfamily
1UT7A 2NWVA 4HJHA 1YQRA 3I3WA 3I0XA 1TGHA 3T4NA 2PWWA 1QN9A 1MPGA 3OGDA 1AISA 1Q9UA 3OH9A 2DKCA 2NOZA 2EIUA 1QN4A 1KFIA 1XSZA 1VOKA 3F10A 1UT4A 3F0ZA 4EJYA 4D7QA 1FN7A 3IH7A 2HKPA 3EAYA 1VKLA 1J3MA 1QN7A 2D0BA 2QLVA 3CWSA 2VJ0A 2HL8A 1KYUA 1NVPA 1YQKA 3OLPA 1N3CA 4QG5A 2V8QA 1TBPA 1EUVA 2HL9A 2OOYA 1KYDA 2NOBA 1P5GX 3PMGA 3OC3C 3HS8A 1QNAA 1C4GA 3CW7A 4D7RA 1PZDA 1N3AA 3SNSA 2LAEA 2V92A 1YQMA 1LWVA 2NOIA 4B0AA 1R4XA 1K35A 3TDHA 5BMNA 3OH6A 1KFQA 4EAIA 1M3HA 1QN3A 4EJZA 2NOHA 1VTLE 1WQAA 2IV9A 4WZSD 2EHBD 3PDKA 1VTOA 3N89A 1N39A 1MP9A 4WX8A 5IYCP 1V5SA 2OOXA 1B9KA 2MZ8A 2D0AA 1CDWA 1KO9A 4WXAA 3C04A 2JOIA 2DKAA 1LXTA 2H5AX 3UW2A 3EIKA 2DKDA 2H4LX 1TUOA 2Y8QA 2FGTA 2NOLA 2IV8A 3KRMA 1HU0A 1TBAB 4TPSA 3OSMA 3CVTA 4EAKA 1UL7A 2QRCA 4ROEB 1PVSA 2QR1A 4IL8A 5AN4A 1YTBA 5BMPA 2NOFA 1P5DX 1QNBA 2XHIA 1QTPA 2NLVA 2V9JA 4Q11A 3OCIA 4PY5A 1LWYA 4EALA 1W80A 1KY7A 2JHJA 3NA5A 4BJUA 5F9CA 2HZSA 2G30A 2QRDA 1PCJX 2YA3A 1PCMX 3ULXA 1EBMA 1QTSA 3ENCA 2ZFDB 4CFFA 3OSTA 1QN8A 1VOLB 3RSMA 4C7PA 1JFIC 2NOEA 1WJWA 2QREA 2Z0FA 3D4VA 2D0CA 3CWAA 5JN5A 1QN5A 4RODB 3KTUA 4MRQA 1M3QA 2F7LA 2Z8UA 4ROCB 2Y8LA 3DPUA 3CWUA 4EAJA 1YQLA 2O3OA 5IYDP 1K2YX 2NVMA 3BKQX 3DPTA 3HS9A 3OSEA 3D7QA 5KL0A 1KYFA 3TE5A 3I0WA 1QNEA 3RPJA 1E42A 2YH5A 1M5Q1 2HZMA 3CVSA 2EHPA 5JMVD 2I5WA 2JPIA 3ASMA 4DULA 3ENOC 5IYBP 5HSHA 3CWTA 2FKFA 1PCZA 5EPCA 2JHNA 1C9BB 1RM1A 1QNCA 1KY6A 1D3UA 1DIZA 2FKMX 2FUVA 1NH2A 4EAGA 3H1ZA 1LWWA 1QN6A 1T6AA 2R5XA 3VN5A 1C47A 2MJ7A 4I8OA 1JDYA 1YTFA 1NGMA
chains in the Genus database with same CATH topology
4HJHA 5BMPA 1P5DX 3I3WA 1C4GA 1K2YX 3BKQX 1K35A 5KL0A 2DKCA 5BMNA 1KFQA 2EIUA 1KFIA 1WQAA 3NA5A 4BJUA 5F9CA 2EHPA 5JMVD 3PDKA 1PCJX 2JPIA 1PCMX 3ENOC 3PMGA 4WX8A 5HSHA 2FKFA 3ENCA 5EPCA 1VKLA 4WXAA 3C04A 2DKAA 1LXTA 2H5AX 3RSMA 3UW2A 2DKDA 2FKMX 2FUVA 2H4LX 1TUOA 1WJWA 2Z0FA 3OLPA 5JN5A 1C47A 4QG5A 1JDYA 4MRQA 2F7LA 4IL8A 1P5GX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HJH A;  5BMP A;  1P5D X;  3I3W A;  1C4G A;  1K2Y X;  3BKQ X;  1K35 A;  5KL0 A;  2DKC A;  5BMN A;  1KFQ A;  2EIU A;  1KFI A;  1WQA A;  3NA5 A;  4BJU A;  5F9C A;  2EHP A;  5JMV D;  3PDK A;  1PCJ X;  2JPI A;  1PCM X;  3ENO C;  3PMG A;  4WX8 A;  5HSH A;  2FKF A;  3ENC A;  5EPC A;  1VKL A;  4WXA A;  3C04 A;  2DKA A;  1LXT A;  2H5A X;  3RSM A;  3UW2 A;  2DKD A;  2FKM X;  2FUV A;  2H4L X;  1TUO A;  1WJW A;  2Z0F A;  3OLP A;  5JN5 A;  1C47 A;  4QG5 A;  1JDY A;  4MRQ A;  2F7L A;  4IL8 A;  1P5G X; 
#chains in the Genus database with same CATH topology
 1UT7 A;  2NWV A;  4HJH A;  1YQR A;  3I3W A;  3I0X A;  1TGH A;  3T4N A;  2PWW A;  1QN9 A;  1MPG A;  3OGD A;  1AIS A;  1Q9U A;  3OH9 A;  2DKC A;  2NOZ A;  2EIU A;  1QN4 A;  1KFI A;  1XSZ A;  1VOK A;  3F10 A;  1UT4 A;  3F0Z A;  4EJY A;  4D7Q A;  1FN7 A;  3IH7 A;  2HKP A;  3EAY A;  1VKL A;  1J3M A;  1QN7 A;  2D0B A;  2QLV A;  3CWS A;  2VJ0 A;  2HL8 A;  1KYU A;  1NVP A;  1YQK A;  3OLP A;  1N3C A;  4QG5 A;  2V8Q A;  1TBP A;  1EUV A;  2HL9 A;  2OOY A;  1KYD A;  2NOB A;  1P5G X;  3PMG A;  3OC3 C;  3HS8 A;  1QNA A;  1C4G A;  3CW7 A;  4D7R A;  1PZD A;  1N3A A;  3SNS A;  2LAE A;  2V92 A;  1YQM A;  1LWV A;  2NOI A;  4B0A A;  1R4X A;  1K35 A;  3TDH A;  5BMN A;  3OH6 A;  1KFQ A;  4EAI A;  1M3H A;  1QN3 A;  4EJZ A;  2NOH A;  1VTL E;  1WQA A;  2IV9 A;  4WZS D;  2EHB D;  3PDK A;  1VTO A;  3N89 A;  1N39 A;  1MP9 A;  4WX8 A;  5IYC P;  1V5S A;  2OOX A;  1B9K A;  2MZ8 A;  2D0A A;  1CDW A;  1KO9 A;  4WXA A;  3C04 A;  2JOI A;  2DKA A;  1LXT A;  2H5A X;  3UW2 A;  3EIK A;  2DKD A;  2H4L X;  1TUO A;  2Y8Q A;  2FGT A;  2NOL A;  2IV8 A;  3KRM A;  1HU0 A;  1TBA B;  4TPS A;  3OSM A;  3CVT A;  4EAK A;  1UL7 A;  2QRC A;  4ROE B;  1PVS A;  2QR1 A;  4IL8 A;  5AN4 A;  1YTB A;  5BMP A;  2NOF A;  1P5D X;  1QNB A;  2XHI A;  1QTP A;  2NLV A;  2V9J A;  4Q11 A;  3OCI A;  4PY5 A;  1LWY A;  4EAL A;  1W80 A;  1KY7 A;  2JHJ A;  3NA5 A;  4BJU A;  5F9C A;  2HZS A;  2G30 A;  2QRD A;  1PCJ X;  2YA3 A;  1PCM X;  3ULX A;  1EBM A;  1QTS A;  3ENC A;  2ZFD B;  4CFF A;  3OST A;  1QN8 A;  1VOL B;  3RSM A;  4C7P A;  1JFI C;  2NOE A;  1WJW A;  2QRE A;  2Z0F A;  3D4V A;  2D0C A;  3CWA A;  5JN5 A;  1QN5 A;  4ROD B;  3KTU A;  4MRQ A;  1M3Q A;  2F7L A;  2Z8U A;  4ROC B;  2Y8L A;  3DPU A;  3CWU A;  4EAJ A;  1YQL A;  2O3O A;  5IYD P;  1K2Y X;  2NVM A;  3BKQ X;  3DPT A;  3HS9 A;  3OSE A;  3D7Q A;  5KL0 A;  1KYF A;  3TE5 A;  3I0W A;  1QNE A;  3RPJ A;  1E42 A;  2YH5 A;  1M5Q 1;  2HZM A;  3CVS A;  2EHP A;  5JMV D;  2I5W A;  2JPI A;  3ASM A;  4DUL A;  3ENO C;  5IYB P;  5HSH A;  3CWT A;  2FKF A;  1PCZ A;  5EPC A;  2JHN A;  1C9B B;  1RM1 A;  1QNC A;  1KY6 A;  1D3U A;  1DIZ A;  2FKM X;  2FUV A;  1NH2 A;  4EAG A;  3H1Z A;  1LWW A;  1QN6 A;  1T6A A;  2R5X A;  3VN5 A;  1C47 A;  2MJ7 A;  4I8O A;  1JDY A;  1YTF A;  1NGM A; 
#chains in the Genus database with same CATH homology
 4HJH A;  5BMP A;  1P5D X;  3I3W A;  1C4G A;  1K2Y X;  3BKQ X;  1K35 A;  5KL0 A;  2DKC A;  5BMN A;  1KFQ A;  2EIU A;  1KFI A;  1WQA A;  3NA5 A;  4BJU A;  5F9C A;  2EHP A;  5JMV D;  3PDK A;  1PCJ X;  2JPI A;  1PCM X;  3ENO C;  3PMG A;  4WX8 A;  5HSH A;  2FKF A;  3ENC A;  5EPC A;  1VKL A;  4WXA A;  3C04 A;  2DKA A;  1LXT A;  2H5A X;  3RSM A;  3UW2 A;  2DKD A;  2FKM X;  2FUV A;  2H4L X;  1TUO A;  1WJW A;  2Z0F A;  3OLP A;  5JN5 A;  1C47 A;  4QG5 A;  1JDY A;  4MRQ A;  2F7L A;  4IL8 A;  1P5G X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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