4IN7H

(m)l214n mutant of the rhodobacter sphaeroides reaction center
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
240
structure length
240
Chain Sequence
DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Role of Rhodobacter sphaeroides photosynthetic reaction center residue M214 in the composition, absorbance properties, and conformations of H(A) and B(A) cofactors.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Rhodobacter sphaeroides
molecule keywords Reaction center protein H chain
total genus 59
structure length 240
sequence length 240
ec nomenclature
pdb deposition date 2013-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region
H PF05239 PRC PRC-barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2 4in7H02
4.10.540.10 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic reaction centre, H subunit, N-terminal domain 4in7H01
2HH1H 2X5VH 4HBHH 2J8CH 1JGXH 1F6NH 2JBLH 2UWWH 3DU3H 2J8DH 4RCRH 1RQKH 2WJNH 2BNSC 1RG5H 2UXLH 1S00H 1PSTH 2UXKH 3PRCH 5LRIH 4CASD 1AIGH 1MPSH 3D38H 2JJ0H 3T6EH 2GMRH 2PRCH 1RY5H 2WJMH 1JH0H 3DU2H 2UWTH 1FNQH 4N7KH 1EYSH 3DTRH 1K6LH 2BNPC 2I5NH 1JGZH 4IN6H 2UWSH 4N7LH 1FNPH 2HITH 2RCRH 3ZUMH 1DV6H 3G7FH 1KBYH 4TQQH 2UX5H 2HG9H 1JGYH 3DTSH 1RVJH 1E6DH 5LSEH 2UX4H 1L9JH 2UWVH 1RGNH 1YSTH 4H9LH 4LWYH 2HJ6H 1YF6H 2HG3H 2UX3H 1R2CH 1RZHH 1RZZH 3V3ZH 3WMMH 1OGVH 1VRNH 1DV3H 1M3XH 1AIJH 1UMXH 2UWUH 3DSYH 3DUQH 3V3YH 2WX5H 5PRCH 1DS8H 3DTAH 3T6DH 4H99H 4IN5H 1QOVH 1DXRH 1PSSH 6PRCH 3ZUWH 1K6NH 2UXJH 1PRCH 1JGWH 2X5UH 1L9BH 2BOZH 7PRCH 2HHKH 4HBJH 1E14H 2JIYH 4IN7H 2GNUH 2UXMH 1PCRH 3I4DH
chains in the Genus database with same CATH superfamily
2HH1H 2X5VH 4HBHH 2J8CH 1JGXH 1F6NH 2JBLH 2UWWH 3DU3H 2J8DH 4RCRH 1RQKH 2WJNH 2BNSC 1RG5H 2UXLH 1S00H 1PSTH 2UXKH 3PRCH 5LRIH 4CASD 1AIGH 1MPSH 3D38H 2JJ0H 3T6EH 2GMRH 2PRCH 1RY5H 2WJMH 1JH0H 3DU2H 2UWTH 1FNQH 4N7KH 1EYSH 3DTRH 1K6LH 2BNPC 2I5NH 1JGZH 4IN6H 2UWSH 4N7LH 1FNPH 2HITH 2RCRH 3ZUMH 1DV6H 3G7FH 1KBYH 4TQQH 2UX5H 2HG9H 1JGYH 3DTSH 1RVJH 1E6DH 5LSEH 2UX4H 1L9JH 2UWVH 1RGNH 1YSTH 4H9LH 4LWYH 2HJ6H 1YF6H 2HG3H 2UX3H 1R2CH 1RZHH 1RZZH 3V3ZH 3WMMH 1OGVH 1VRNH 1DV3H 1M3XH 1AIJH 1UMXH 2UWUH 3DSYH 3DUQH 3V3YH 2WX5H 5PRCH 1DS8H 3DTAH 3T6DH 4H99H 4IN5H 1QOVH 1DXRH 1PSSH 6PRCH 3ZUWH 1K6NH 2UXJH 1PRCH 1JGWH 2X5UH 1L9BH 2BOZH 7PRCH 2HHKH 4HBJH 1E14H 2JIYH 4IN7H 2GNUH 2UXMH 1PCRH 3I4DH
chains in the Genus database with same CATH topology
2HH1H 2X5VH 4HBHH 2J8CH 1JGXH 1F6NH 2JBLH 2UWWH 3DU3H 2J8DH 4RCRH 1RQKH 2WJNH 2BNSC 1RG5H 2UXLH 1S00H 1PSTH 2UXKH 3PRCH 5LRIH 4CASD 1AIGH 1MPSH 3D38H 2JJ0H 3T6EH 2GMRH 2PRCH 1RY5H 2WJMH 1JH0H 3DU2H 2UWTH 1FNQH 4N7KH 1EYSH 3DTRH 1K6LH 2BNPC 2I5NH 1JGZH 4IN6H 2UWSH 4N7LH 1FNPH 2HITH 2RCRH 3ZUMH 1DV6H 3G7FH 1KBYH 4TQQH 2UX5H 2HG9H 1JGYH 3DTSH 1RVJH 1E6DH 5LSEH 2UX4H 1L9JH 2UWVH 1RGNH 1YSTH 4H9LH 4LWYH 2HJ6H 1YF6H 2HG3H 2UX3H 1R2CH 1RZHH 1RZZH 3V3ZH 3WMMH 1OGVH 1VRNH 1DV3H 1M3XH 1AIJH 1UMXH 2UWUH 3DSYH 3DUQH 3V3YH 2WX5H 5PRCH 1DS8H 3DTAH 3T6DH 4H99H 4IN5H 1QOVH 1DXRH 1PSSH 6PRCH 3ZUWH 1K6NH 2UXJH 1PRCH 1JGWH 2X5UH 1L9BH 2BOZH 7PRCH 2HHKH 4HBJH 1E14H 2JIYH 4IN7H 2GNUH 2UXMH 1PCRH 3I4DH
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2HH1 H;  2X5V H;  4HBH H;  2J8C H;  1JGX H;  1F6N H;  2JBL H;  2UWW H;  3DU3 H;  2J8D H;  4RCR H;  1RQK H;  2WJN H;  2BNS C;  1RG5 H;  2UXL H;  1S00 H;  1PST H;  2UXK H;  3PRC H;  5LRI H;  4CAS D;  1AIG H;  1MPS H;  3D38 H;  2JJ0 H;  3T6E H;  2GMR H;  2PRC H;  1RY5 H;  2WJM H;  1JH0 H;  3DU2 H;  2UWT H;  1FNQ H;  4N7K H;  1EYS H;  3DTR H;  1K6L H;  2BNP C;  2I5N H;  1JGZ H;  4IN6 H;  2UWS H;  4N7L H;  1FNP H;  2HIT H;  2RCR H;  3ZUM H;  1DV6 H;  3G7F H;  1KBY H;  4TQQ H;  2UX5 H;  2HG9 H;  1JGY H;  3DTS H;  1RVJ H;  1E6D H;  5LSE H;  2UX4 H;  1L9J H;  2UWV H;  1RGN H;  1YST H;  4H9L H;  4LWY H;  2HJ6 H;  1YF6 H;  2HG3 H;  2UX3 H;  1R2C H;  1RZH H;  1RZZ H;  3V3Z H;  3WMM H;  1OGV H;  1VRN H;  1DV3 H;  1M3X H;  1AIJ H;  1UMX H;  2UWU H;  3DSY H;  3DUQ H;  3V3Y H;  2WX5 H;  5PRC H;  1DS8 H;  3DTA H;  3T6D H;  4H99 H;  4IN5 H;  1QOV H;  1DXR H;  1PSS H;  6PRC H;  3ZUW H;  1K6N H;  2UXJ H;  1PRC H;  1JGW H;  2X5U H;  1L9B H;  2BOZ H;  7PRC H;  2HHK H;  4HBJ H;  1E14 H;  2JIY H;  4IN7 H;  2GNU H;  2UXM H;  1PCR H;  3I4D H; 
#chains in the Genus database with same CATH topology
 2HH1 H;  2X5V H;  4HBH H;  2J8C H;  1JGX H;  1F6N H;  2JBL H;  2UWW H;  3DU3 H;  2J8D H;  4RCR H;  1RQK H;  2WJN H;  2BNS C;  1RG5 H;  2UXL H;  1S00 H;  1PST H;  2UXK H;  3PRC H;  5LRI H;  4CAS D;  1AIG H;  1MPS H;  3D38 H;  2JJ0 H;  3T6E H;  2GMR H;  2PRC H;  1RY5 H;  2WJM H;  1JH0 H;  3DU2 H;  2UWT H;  1FNQ H;  4N7K H;  1EYS H;  3DTR H;  1K6L H;  2BNP C;  2I5N H;  1JGZ H;  4IN6 H;  2UWS H;  4N7L H;  1FNP H;  2HIT H;  2RCR H;  3ZUM H;  1DV6 H;  3G7F H;  1KBY H;  4TQQ H;  2UX5 H;  2HG9 H;  1JGY H;  3DTS H;  1RVJ H;  1E6D H;  5LSE H;  2UX4 H;  1L9J H;  2UWV H;  1RGN H;  1YST H;  4H9L H;  4LWY H;  2HJ6 H;  1YF6 H;  2HG3 H;  2UX3 H;  1R2C H;  1RZH H;  1RZZ H;  3V3Z H;  3WMM H;  1OGV H;  1VRN H;  1DV3 H;  1M3X H;  1AIJ H;  1UMX H;  2UWU H;  3DSY H;  3DUQ H;  3V3Y H;  2WX5 H;  5PRC H;  1DS8 H;  3DTA H;  3T6D H;  4H99 H;  4IN5 H;  1QOV H;  1DXR H;  1PSS H;  6PRC H;  3ZUW H;  1K6N H;  2UXJ H;  1PRC H;  1JGW H;  2X5U H;  1L9B H;  2BOZ H;  7PRC H;  2HHK H;  4HBJ H;  1E14 H;  2JIY H;  4IN7 H;  2GNU H;  2UXM H;  1PCR H;  3I4D H; 
#chains in the Genus database with same CATH homology
 2HH1 H;  2X5V H;  4HBH H;  2J8C H;  1JGX H;  1F6N H;  2JBL H;  2UWW H;  3DU3 H;  2J8D H;  4RCR H;  1RQK H;  2WJN H;  2BNS C;  1RG5 H;  2UXL H;  1S00 H;  1PST H;  2UXK H;  3PRC H;  5LRI H;  4CAS D;  1AIG H;  1MPS H;  3D38 H;  2JJ0 H;  3T6E H;  2GMR H;  2PRC H;  1RY5 H;  2WJM H;  1JH0 H;  3DU2 H;  2UWT H;  1FNQ H;  4N7K H;  1EYS H;  3DTR H;  1K6L H;  2BNP C;  2I5N H;  1JGZ H;  4IN6 H;  2UWS H;  4N7L H;  1FNP H;  2HIT H;  2RCR H;  3ZUM H;  1DV6 H;  3G7F H;  1KBY H;  4TQQ H;  2UX5 H;  2HG9 H;  1JGY H;  3DTS H;  1RVJ H;  1E6D H;  5LSE H;  2UX4 H;  1L9J H;  2UWV H;  1RGN H;  1YST H;  4H9L H;  4LWY H;  2HJ6 H;  1YF6 H;  2HG3 H;  2UX3 H;  1R2C H;  1RZH H;  1RZZ H;  3V3Z H;  3WMM H;  1OGV H;  1VRN H;  1DV3 H;  1M3X H;  1AIJ H;  1UMX H;  2UWU H;  3DSY H;  3DUQ H;  3V3Y H;  2WX5 H;  5PRC H;  1DS8 H;  3DTA H;  3T6D H;  4H99 H;  4IN5 H;  1QOV H;  1DXR H;  1PSS H;  6PRC H;  3ZUW H;  1K6N H;  2UXJ H;  1PRC H;  1JGW H;  2X5U H;  1L9B H;  2BOZ H;  7PRC H;  2HHK H;  4HBJ H;  1E14 H;  2JIY H;  4IN7 H;  2GNU H;  2UXM H;  1PCR H;  3I4D H;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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