4IO9G

Crystal structure of compound 4d bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
142
structure length
142
Chain Sequence
KTYIPKNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 26
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 4io9G00
1VQOJ 1YITJ 3CCRJ 4V19N 1VQPJ 1KC8K 1KD1K 1JJ2I 1VQ6J 1Q81K 1VQMJ 3DLLG 3CMAJ 3CXCI 3CCSJ 2ZJRG 3PIPG 1NJIK 1K8AK 2QA4J 3CCVJ 1VQ5J 3CC7J 3PIOG 3J7YK 3CC2J 1YJNJ 1YJWJ 2ZJQG 1K9MK 1J3AA 3CMEJ 1VQ7J 1KQSI 1M90K 1YHQJ 3CCQJ 1Q7YK 1K73K 3CCUJ 1N8RK 1VQ4J 1VQ8J 4IOCG 3I55J 1Q86K 2QEXJ 3CCMJ 3OW2I 4IO9G 1VQKJ 3CF5G 1S72J 3CCEJ 1VQNJ 3G6EJ 1M1KK 3G4SJ 1YIJJ 3I56J 1W2BI 2ZJPG 2OTLJ 1VQ9J 3CD6J 3G71J 1QVFI 1YI2J 1VQLJ 3CC4J 1QVGI 2OTJJ 1Q82K 4IOAG 1YJ9J 3CPWI 3CCJJ 3CCLJ
chains in the Genus database with same CATH superfamily
1VQOJ 1YITJ 3CCRJ 4V19N 1VQPJ 1KC8K 1KD1K 1JJ2I 1VQ6J 1Q81K 1VQMJ 3DLLG 3CMAJ 3CXCI 3CCSJ 2ZJRG 3PIPG 1NJIK 1K8AK 2QA4J 3CCVJ 1VQ5J 3CC7J 3PIOG 3J7YK 3CC2J 1YJNJ 1YJWJ 2ZJQG 1K9MK 1J3AA 3CMEJ 1VQ7J 1KQSI 1M90K 1YHQJ 3CCQJ 1Q7YK 1K73K 3CCUJ 1N8RK 1VQ4J 1VQ8J 4IOCG 3I55J 1Q86K 2QEXJ 3CCMJ 3OW2I 4IO9G 1VQKJ 3CF5G 1S72J 3CCEJ 1VQNJ 3G6EJ 1M1KK 3G4SJ 1YIJJ 3I56J 1W2BI 2ZJPG 2OTLJ 1VQ9J 3CD6J 3G71J 1QVFI 1YI2J 1VQLJ 3CC4J 1QVGI 2OTJJ 1Q82K 4IOAG 1YJ9J 3CPWI 3CCJJ 3CCLJ
chains in the Genus database with same CATH topology
1VQOJ 1YITJ 3CCRJ 4V19N 1VQPJ 1KC8K 1KD1K 1JJ2I 1VQ6J 1Q81K 1VQMJ 3DLLG 3CMAJ 3CXCI 3CCSJ 2ZJRG 3PIPG 1NJIK 1K8AK 2QA4J 3CCVJ 1VQ5J 3CC7J 3PIOG 3J7YK 3CC2J 1YJNJ 1YJWJ 2ZJQG 1K9MK 1J3AA 3CMEJ 1VQ7J 1KQSI 1M90K 1YHQJ 3CCQJ 1Q7YK 1K73K 3CCUJ 1N8RK 1VQ4J 1VQ8J 4IOCG 3I55J 1Q86K 2QEXJ 3CCMJ 3OW2I 4IO9G 1VQKJ 3CF5G 1S72J 3CCEJ 1VQNJ 3G6EJ 1M1KK 3G4SJ 1YIJJ 3I56J 1W2BI 2ZJPG 2OTLJ 1VQ9J 3CD6J 3G71J 1QVFI 1YI2J 1VQLJ 3CC4J 1QVGI 2OTJJ 1Q82K 4IOAG 1YJ9J 3CPWI 3CCJJ 3CCLJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQO J;  1YIT J;  3CCR J;  4V19 N;  1VQP J;  1KC8 K;  1KD1 K;  1JJ2 I;  1VQ6 J;  1Q81 K;  1VQM J;  3DLL G;  3CMA J;  3CXC I;  3CCS J;  2ZJR G;  3PIP G;  1NJI K;  1K8A K;  2QA4 J;  3CCV J;  1VQ5 J;  3CC7 J;  3PIO G;  3J7Y K;  3CC2 J;  1YJN J;  1YJW J;  2ZJQ G;  1K9M K;  1J3A A;  3CME J;  1VQ7 J;  1KQS I;  1M90 K;  1YHQ J;  3CCQ J;  1Q7Y K;  1K73 K;  3CCU J;  1N8R K;  1VQ4 J;  1VQ8 J;  4IOC G;  3I55 J;  1Q86 K;  2QEX J;  3CCM J;  3OW2 I;  4IO9 G;  1VQK J;  3CF5 G;  1S72 J;  3CCE J;  1VQN J;  3G6E J;  1M1K K;  3G4S J;  1YIJ J;  3I56 J;  1W2B I;  2ZJP G;  2OTL J;  1VQ9 J;  3CD6 J;  3G71 J;  1QVF I;  1YI2 J;  1VQL J;  3CC4 J;  1QVG I;  2OTJ J;  1Q82 K;  4IOA G;  1YJ9 J;  3CPW I;  3CCJ J;  3CCL J; 
#chains in the Genus database with same CATH topology
 1VQO J;  1YIT J;  3CCR J;  4V19 N;  1VQP J;  1KC8 K;  1KD1 K;  1JJ2 I;  1VQ6 J;  1Q81 K;  1VQM J;  3DLL G;  3CMA J;  3CXC I;  3CCS J;  2ZJR G;  3PIP G;  1NJI K;  1K8A K;  2QA4 J;  3CCV J;  1VQ5 J;  3CC7 J;  3PIO G;  3J7Y K;  3CC2 J;  1YJN J;  1YJW J;  2ZJQ G;  1K9M K;  1J3A A;  3CME J;  1VQ7 J;  1KQS I;  1M90 K;  1YHQ J;  3CCQ J;  1Q7Y K;  1K73 K;  3CCU J;  1N8R K;  1VQ4 J;  1VQ8 J;  4IOC G;  3I55 J;  1Q86 K;  2QEX J;  3CCM J;  3OW2 I;  4IO9 G;  1VQK J;  3CF5 G;  1S72 J;  3CCE J;  1VQN J;  3G6E J;  1M1K K;  3G4S J;  1YIJ J;  3I56 J;  1W2B I;  2ZJP G;  2OTL J;  1VQ9 J;  3CD6 J;  3G71 J;  1QVF I;  1YI2 J;  1VQL J;  3CC4 J;  1QVG I;  2OTJ J;  1Q82 K;  4IOA G;  1YJ9 J;  3CPW I;  3CCJ J;  3CCL J; 
#chains in the Genus database with same CATH homology
 1VQO J;  1YIT J;  3CCR J;  4V19 N;  1VQP J;  1KC8 K;  1KD1 K;  1JJ2 I;  1VQ6 J;  1Q81 K;  1VQM J;  3DLL G;  3CMA J;  3CXC I;  3CCS J;  2ZJR G;  3PIP G;  1NJI K;  1K8A K;  2QA4 J;  3CCV J;  1VQ5 J;  3CC7 J;  3PIO G;  3J7Y K;  3CC2 J;  1YJN J;  1YJW J;  2ZJQ G;  1K9M K;  1J3A A;  3CME J;  1VQ7 J;  1KQS I;  1M90 K;  1YHQ J;  3CCQ J;  1Q7Y K;  1K73 K;  3CCU J;  1N8R K;  1VQ4 J;  1VQ8 J;  4IOC G;  3I55 J;  1Q86 K;  2QEX J;  3CCM J;  3OW2 I;  4IO9 G;  1VQK J;  3CF5 G;  1S72 J;  3CCE J;  1VQN J;  3G6E J;  1M1K K;  3G4S J;  1YIJ J;  3I56 J;  1W2B I;  2ZJP G;  2OTL J;  1VQ9 J;  3CD6 J;  3G71 J;  1QVF I;  1YI2 J;  1VQL J;  3CC4 J;  1QVG I;  2OTJ J;  1Q82 K;  4IOA G;  1YJ9 J;  3CPW I;  3CCJ J;  3CCL J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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