4IO9J

Crystal structure of compound 4d bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 22
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4io9J01
5MLCO 4WFNJ 1VQ4H 1Q81J 4WCEJ 5HL7J 3PIOJ 1K73J 1VQKH 1Q7YJ 3CCSH 3G6EH 3CCEH 3CCQH 1K8AJ 2OTJH 5JVGJ 5GAHN 3G71H 1VQLH 1QVGH 1WKIA 1VQ5H 2ZJRJ 1K9MJ 5JVHJ 1S72H 4IOAJ 4U67J 3J7ZM 3CCVH 3CD6H 1KD1J 1YJ9H 5DM7J 1YIJH 3CPWH 3I56H 3CCJH 3CC2H 3DLLJ 3CF5J 4WF9J 4WFBJ 1VQ8H 1VQPH 5GAGN 2OTLH 1YITH 1NJIJ 4WFAJ 1VQMH 3G4SH 3CCUH 1YJWH 1VQNH 3CMAH 1KC8J 2QEXH 1QVFH 3CCLH 3CC7H 3CC4H 4IOCJ 3CCRH 1VQ6H 3OW2H 1Y69K 1M90J 1N8RJ 3CXCH 2ZJQJ 3CCMH 1VQ9H 1Q82J 1JJ2H 1YHQH 1VQOH 4UY8M 1Q86J 2QA4H 3I55H 1YJNH 4IO9J 1YI2H 5AN9F 1M1KJ 5GAEN 3CMEH 2PA2A 3PIPJ 5GADN 5H1SO 1W2BH 1VQ7H 2ZJPJ 1KQSH 5DM6J
chains in the Genus database with same CATH superfamily
3GNNA 1SB3A 4YEKA 5MLCO 4KWWA 4WFNJ 1VQ4H 3C2RA 1QPNA 5MPOC 1N60B 4KWVA 1Q81J 4WCEJ 5HL7J 3PIOJ 1K73J 2W55B 3FC4A 1UOUA 1VQKH 2W3SB 1Q7YJ 3CCSH 2B7QA 3G6EH 3NVVC 4USAA 3AM9A 3PAJA 3CCEH 4C80A 3CCQH 1K8AJ 2OTJH 4X46A 5JVGJ 5GAHN 3G71H 1FO4A 4XR5A 3NVWC 1VQLH 1X1OA 1QPOA 2QIEA 1QVGH 1WKIA 1VQ5H 1DGJA 3EUB4 2ZJRJ 1K9MJ 1O4UA 5EP8A 1FFVB 2E3TA 5JVHJ 1N63B 1S72H 1V97A 3RPFA 4IOAJ 4U67J 3J7ZM 3WNZA 1FM0E 1VDVA 3CCVH 3CD6H 1QPQA 1KD1J 1YJ9H 5DM7J 1YIJH 3TQVA 3CPWH 3I56H 3CCJH 4US9A 3CC2H 2TPTA 3DLLJ 2OMDA 2I1OA 4GA6A 3NRZC 1WYGA 4I9AA 4WF9J 3CF5J 1SIJA 4WFBJ 3FAHA 1FFUB 3H5QA 2WP4A 1VQPH 5GAGN 1VQ8H 2W54B 4EAFA 2OTLH 1QAPA 4US8A 1YITH 5AYZA 1NJIJ 4WFAJ 1VQMH 3G4SH 1JRPB 3CCUH 1YJWH 1RM6A 1VQNH 5EY3A 3NVYC 3CMAH 1KC8J 2WK6A 2QEXH 2Q5WE 3C2EA 4AP8A 3BIIE 3CCLH 1QVFH 3CC7H 3CC4H 3NVZC 3AMZA 1VLBA 3C2OA 3C2VA 3VMMA 4IOCJ 3CCRH 1VQ6H 1AZYA 3OW2H 1FMAE 5AYYA 1Y69K 1OTPA 4GA4A 1M90J 1NVIE 4C7YA 1N8RJ 3CXCH 2WK5A 1JROB 1FIQC 2DSJA 2ZJQJ 3NS1C 2B7PA 3AN1A 3CCMH 3SR6C 1VQ9H 1Q82J 1JJ2H 1YHQH 3B9JC 1VQOH 4UY8M 2I14A 1Q86J 2QA4H 1N61B 1YTEA 3I55H 1YTDA 4YYYA 3WO0A 1YJNH 2B7NA 1ZXIB 4IO9J 1YI2H 5AN9F 1M1KJ 1N5XA 5GAEN 3CMEH 2PA2A 1N5WB 4C7ZA 1NVJA 2J0FA 3PIPJ 3C2FA 3L4PA 3L0GA 1YTKA 5HULA 5GADN 1N62B 3WO1A 5H1SO 1W2BH 1VQ7H 2ZJPJ 1KQSH 5HUOA 2W3RB 5DM6J 2JBMA 4LHMA 5AYXA 5HUPA 4ZOHA 4EADA 1QPRA 4GA5A 3ETRC 1BRWA
chains in the Genus database with same CATH topology
5MLCO 4WFNJ 1VQ4H 1Q81J 4WCEJ 5HL7J 3PIOJ 1K73J 1VQKH 1Q7YJ 3CCSH 3G6EH 3CCEH 3CCQH 1K8AJ 2OTJH 5JVGJ 5GAHN 3G71H 1VQLH 1QVGH 1WKIA 1VQ5H 2ZJRJ 1K9MJ 5JVHJ 1S72H 4IOAJ 4U67J 3J7ZM 3CCVH 3CD6H 1KD1J 1YJ9H 5DM7J 1YIJH 3CPWH 3I56H 3CCJH 3CC2H 3DLLJ 3CF5J 4WF9J 4WFBJ 1VQ8H 1VQPH 5GAGN 2OTLH 1YITH 1NJIJ 4WFAJ 1VQMH 3G4SH 3CCUH 1YJWH 1VQNH 3CMAH 1KC8J 2QEXH 1QVFH 3CCLH 3CC7H 3CC4H 4IOCJ 3CCRH 1VQ6H 3OW2H 1Y69K 1M90J 1N8RJ 3CXCH 2ZJQJ 3CCMH 1VQ9H 1Q82J 1JJ2H 1YHQH 1VQOH 4UY8M 1Q86J 2QA4H 3I55H 1YJNH 4IO9J 1YI2H 5AN9F 1M1KJ 5GAEN 3CMEH 2PA2A 3PIPJ 5GADN 5H1SO 1W2BH 1VQ7H 2ZJPJ 1KQSH 5DM6J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5MLC O;  4WFN J;  1VQ4 H;  1Q81 J;  4WCE J;  5HL7 J;  3PIO J;  1K73 J;  1VQK H;  1Q7Y J;  3CCS H;  3G6E H;  3CCE H;  3CCQ H;  1K8A J;  2OTJ H;  5JVG J;  5GAH N;  3G71 H;  1VQL H;  1QVG H;  1WKI A;  1VQ5 H;  2ZJR J;  1K9M J;  5JVH J;  1S72 H;  4IOA J;  4U67 J;  3J7Z M;  3CCV H;  3CD6 H;  1KD1 J;  1YJ9 H;  5DM7 J;  1YIJ H;  3CPW H;  3I56 H;  3CCJ H;  3CC2 H;  3DLL J;  3CF5 J;  4WF9 J;  4WFB J;  1VQ8 H;  1VQP H;  5GAG N;  2OTL H;  1YIT H;  1NJI J;  4WFA J;  1VQM H;  3G4S H;  3CCU H;  1YJW H;  1VQN H;  3CMA H;  1KC8 J;  2QEX H;  1QVF H;  3CCL H;  3CC7 H;  3CC4 H;  4IOC J;  3CCR H;  1VQ6 H;  3OW2 H;  1Y69 K;  1M90 J;  1N8R J;  3CXC H;  2ZJQ J;  3CCM H;  1VQ9 H;  1Q82 J;  1JJ2 H;  1YHQ H;  1VQO H;  4UY8 M;  1Q86 J;  2QA4 H;  3I55 H;  1YJN H;  4IO9 J;  1YI2 H;  5AN9 F;  1M1K J;  5GAE N;  3CME H;  2PA2 A;  3PIP J;  5GAD N;  5H1S O;  1W2B H;  1VQ7 H;  2ZJP J;  1KQS H;  5DM6 J; 
#chains in the Genus database with same CATH topology
 3GNN A;  1SB3 A;  4YEK A;  5MLC O;  4KWW A;  4WFN J;  1VQ4 H;  3C2R A;  1QPN A;  5MPO C;  1N60 B;  4KWV A;  1Q81 J;  4WCE J;  5HL7 J;  3PIO J;  1K73 J;  2W55 B;  3FC4 A;  1UOU A;  1VQK H;  2W3S B;  1Q7Y J;  3CCS H;  2B7Q A;  3G6E H;  3NVV C;  4USA A;  3AM9 A;  3PAJ A;  3CCE H;  4C80 A;  3CCQ H;  1K8A J;  2OTJ H;  4X46 A;  5JVG J;  5GAH N;  3G71 H;  1FO4 A;  4XR5 A;  3NVW C;  1VQL H;  1X1O A;  1QPO A;  2QIE A;  1QVG H;  1WKI A;  1VQ5 H;  1DGJ A;  3EUB 4;  2ZJR J;  1K9M J;  1O4U A;  5EP8 A;  1FFV B;  2E3T A;  5JVH J;  1N63 B;  1S72 H;  1V97 A;  3RPF A;  4IOA J;  4U67 J;  3J7Z M;  3WNZ A;  1FM0 E;  1VDV A;  3CCV H;  3CD6 H;  1QPQ A;  1KD1 J;  1YJ9 H;  5DM7 J;  1YIJ H;  3TQV A;  3CPW H;  3I56 H;  3CCJ H;  4US9 A;  3CC2 H;  2TPT A;  3DLL J;  2OMD A;  2I1O A;  4GA6 A;  3NRZ C;  1WYG A;  4I9A A;  4WF9 J;  3CF5 J;  1SIJ A;  4WFB J;  3FAH A;  1FFU B;  3H5Q A;  2WP4 A;  1VQP H;  5GAG N;  1VQ8 H;  2W54 B;  4EAF A;  2OTL H;  1QAP A;  4US8 A;  1YIT H;  5AYZ A;  1NJI J;  4WFA J;  1VQM H;  3G4S H;  1JRP B;  3CCU H;  1YJW H;  1RM6 A;  1VQN H;  5EY3 A;  3NVY C;  3CMA H;  1KC8 J;  2WK6 A;  2QEX H;  2Q5W E;  3C2E A;  4AP8 A;  3BII E;  3CCL H;  1QVF H;  3CC7 H;  3CC4 H;  3NVZ C;  3AMZ A;  1VLB A;  3C2O A;  3C2V A;  3VMM A;  4IOC J;  3CCR H;  1VQ6 H;  1AZY A;  3OW2 H;  1FMA E;  5AYY A;  1Y69 K;  1OTP A;  4GA4 A;  1M90 J;  1NVI E;  4C7Y A;  1N8R J;  3CXC H;  2WK5 A;  1JRO B;  1FIQ C;  2DSJ A;  2ZJQ J;  3NS1 C;  2B7P A;  3AN1 A;  3CCM H;  3SR6 C;  1VQ9 H;  1Q82 J;  1JJ2 H;  1YHQ H;  3B9J C;  1VQO H;  4UY8 M;  2I14 A;  1Q86 J;  2QA4 H;  1N61 B;  1YTE A;  3I55 H;  1YTD A;  4YYY A;  3WO0 A;  1YJN H;  2B7N A;  1ZXI B;  4IO9 J;  1YI2 H;  5AN9 F;  1M1K J;  1N5X A;  5GAE N;  3CME H;  2PA2 A;  1N5W B;  4C7Z A;  1NVJ A;  2J0F A;  3PIP J;  3C2F A;  3L4P A;  3L0G A;  1YTK A;  5HUL A;  5GAD N;  1N62 B;  3WO1 A;  5H1S O;  1W2B H;  1VQ7 H;  2ZJP J;  1KQS H;  5HUO A;  2W3R B;  5DM6 J;  2JBM A;  4LHM A;  5AYX A;  5HUP A;  4ZOH A;  4EAD A;  1QPR A;  4GA5 A;  3ETR C;  1BRW A; 
#chains in the Genus database with same CATH homology
 5MLC O;  4WFN J;  1VQ4 H;  1Q81 J;  4WCE J;  5HL7 J;  3PIO J;  1K73 J;  1VQK H;  1Q7Y J;  3CCS H;  3G6E H;  3CCE H;  3CCQ H;  1K8A J;  2OTJ H;  5JVG J;  5GAH N;  3G71 H;  1VQL H;  1QVG H;  1WKI A;  1VQ5 H;  2ZJR J;  1K9M J;  5JVH J;  1S72 H;  4IOA J;  4U67 J;  3J7Z M;  3CCV H;  3CD6 H;  1KD1 J;  1YJ9 H;  5DM7 J;  1YIJ H;  3CPW H;  3I56 H;  3CCJ H;  3CC2 H;  3DLL J;  3CF5 J;  4WF9 J;  4WFB J;  1VQ8 H;  1VQP H;  5GAG N;  2OTL H;  1YIT H;  1NJI J;  4WFA J;  1VQM H;  3G4S H;  3CCU H;  1YJW H;  1VQN H;  3CMA H;  1KC8 J;  2QEX H;  1QVF H;  3CCL H;  3CC7 H;  3CC4 H;  4IOC J;  3CCR H;  1VQ6 H;  3OW2 H;  1Y69 K;  1M90 J;  1N8R J;  3CXC H;  2ZJQ J;  3CCM H;  1VQ9 H;  1Q82 J;  1JJ2 H;  1YHQ H;  1VQO H;  4UY8 M;  1Q86 J;  2QA4 H;  3I55 H;  1YJN H;  4IO9 J;  1YI2 H;  5AN9 F;  1M1K J;  5GAE N;  3CME H;  2PA2 A;  3PIP J;  5GAD N;  5H1S O;  1W2B H;  1VQ7 H;  2ZJP J;  1KQS H;  5DM6 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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