4IOAH

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
134
structure length
134
Chain Sequence
MIMPQSRLDVADNSGAREIMCIRVLNSGIGGKGLTTGGGGNKRYAHVGDIIVASVKDAAPRGAVKAGDVVKAVVVRTSHAIKRADGSTIRFDRNAAVIINNQGEPRGTRVFGPVARELRDRRFMKIVSLAPEVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 30
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 4ioaH00
3CCJK 3CC7K 4IOCH 1YIJK 1VQ4K 1VQLK 3J7YL 3CCQK 2QEXK 3CCLK 5MLCM 3J7ZK 1KQSJ 1K73L 1WHIA 1NJIL 4WFNH 3PIOH 1YITK 2ZJQH 1VQ5K 3G4SK 3CCUK 3CCEK 1QVGJ 1QVFJ 5GAHL 4WCEH 3CD6K 5HL7H 1KD1L 4V19O 1VQNK 3I55K 1Q7YL 3OW2J 3CCSK 1VQPK 1K8AL 1VQKK 3CF5H 1JJ2J 4WFBH 1N8RL 1M90L 2QA4K 1YHQK 2OTLK 1Q81L 1YJNK 5GAGL 5JVHH 5AN9E 1M1KL 1S72K 1YJ9K 3CMEK 3CCMK 3DLLH 1W2BJ 1YI2K 3CC2K 3I56K 5H1SM 3CCVK 1VQ9K 2ZJPH 4WF9H 4U67H 4IOAH 2ZJRH 5DM6H 4UY8K 3CMAK 3CCRK 2OTJK 3PIPH 1VQMK 1VQ6K 3CPWJ 3CC4K 4WFAH 1YJWK 1K9ML 3G6EK 1VQOK 5DM7H 5GAEL 1Q82L 3G71K 3CXCJ 5JVGH 1VQ7K 1VQ8K 1KC8L 1Q86L 5GADL 4IO9H
chains in the Genus database with same CATH superfamily
3CCJK 3CC7K 4IOCH 1YIJK 1VQ4K 1VQLK 3J7YL 3CCQK 2QEXK 3CCLK 5MLCM 3J7ZK 1KQSJ 1K73L 1WHIA 1NJIL 4WFNH 3PIOH 1YITK 2ZJQH 1VQ5K 3G4SK 3CCUK 3CCEK 1QVGJ 1QVFJ 5GAHL 4WCEH 3CD6K 5HL7H 1KD1L 4V19O 1VQNK 3I55K 1Q7YL 3OW2J 3CCSK 1VQPK 1K8AL 1VQKK 3CF5H 1JJ2J 4WFBH 1N8RL 1M90L 2QA4K 1YHQK 2OTLK 1Q81L 1YJNK 5GAGL 5JVHH 5AN9E 1M1KL 1S72K 1YJ9K 3CMEK 3CCMK 3DLLH 1W2BJ 1YI2K 3CC2K 3I56K 5H1SM 3CCVK 1VQ9K 2ZJPH 4WF9H 4U67H 4IOAH 2ZJRH 5DM6H 4UY8K 3CMAK 3CCRK 2OTJK 3PIPH 1VQMK 1VQ6K 3CPWJ 3CC4K 4WFAH 1YJWK 1K9ML 3G6EK 1VQOK 5DM7H 5GAEL 1Q82L 3G71K 3CXCJ 5JVGH 1VQ7K 1VQ8K 1KC8L 1Q86L 5GADL 4IO9H
chains in the Genus database with same CATH topology
3CCJK 3CC7K 4IOCH 1YIJK 1VQ4K 1VQLK 3J7YL 3CCQK 2QEXK 3CCLK 5MLCM 3J7ZK 1KQSJ 1K73L 1WHIA 1NJIL 4WFNH 3PIOH 1YITK 2ZJQH 1VQ5K 3G4SK 3CCUK 3CCEK 1QVGJ 1QVFJ 5GAHL 4WCEH 3CD6K 5HL7H 1KD1L 4V19O 1VQNK 3I55K 1Q7YL 3OW2J 3CCSK 1VQPK 1K8AL 1VQKK 3CF5H 1JJ2J 4WFBH 1N8RL 1M90L 2QA4K 1YHQK 2OTLK 1Q81L 1YJNK 5GAGL 5JVHH 5AN9E 1M1KL 1S72K 1YJ9K 3CMEK 3CCMK 3DLLH 1W2BJ 1YI2K 3CC2K 3I56K 5H1SM 3CCVK 1VQ9K 2ZJPH 4WF9H 4U67H 4IOAH 2ZJRH 5DM6H 4UY8K 3CMAK 3CCRK 2OTJK 3PIPH 1VQMK 1VQ6K 3CPWJ 3CC4K 4WFAH 1YJWK 1K9ML 3G6EK 1VQOK 5DM7H 5GAEL 1Q82L 3G71K 3CXCJ 5JVGH 1VQ7K 1VQ8K 1KC8L 1Q86L 5GADL 4IO9H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCJ K;  3CC7 K;  4IOC H;  1YIJ K;  1VQ4 K;  1VQL K;  3J7Y L;  3CCQ K;  2QEX K;  3CCL K;  5MLC M;  3J7Z K;  1KQS J;  1K73 L;  1WHI A;  1NJI L;  4WFN H;  3PIO H;  1YIT K;  2ZJQ H;  1VQ5 K;  3G4S K;  3CCU K;  3CCE K;  1QVG J;  1QVF J;  5GAH L;  4WCE H;  3CD6 K;  5HL7 H;  1KD1 L;  4V19 O;  1VQN K;  3I55 K;  1Q7Y L;  3OW2 J;  3CCS K;  1VQP K;  1K8A L;  1VQK K;  3CF5 H;  1JJ2 J;  4WFB H;  1N8R L;  1M90 L;  2QA4 K;  1YHQ K;  2OTL K;  1Q81 L;  1YJN K;  5GAG L;  5JVH H;  5AN9 E;  1M1K L;  1S72 K;  1YJ9 K;  3CME K;  3CCM K;  3DLL H;  1W2B J;  1YI2 K;  3CC2 K;  3I56 K;  5H1S M;  3CCV K;  1VQ9 K;  2ZJP H;  4WF9 H;  4U67 H;  4IOA H;  2ZJR H;  5DM6 H;  4UY8 K;  3CMA K;  3CCR K;  2OTJ K;  3PIP H;  1VQM K;  1VQ6 K;  3CPW J;  3CC4 K;  4WFA H;  1YJW K;  1K9M L;  3G6E K;  1VQO K;  5DM7 H;  5GAE L;  1Q82 L;  3G71 K;  3CXC J;  5JVG H;  1VQ7 K;  1VQ8 K;  1KC8 L;  1Q86 L;  5GAD L;  4IO9 H; 
#chains in the Genus database with same CATH topology
 3CCJ K;  3CC7 K;  4IOC H;  1YIJ K;  1VQ4 K;  1VQL K;  3J7Y L;  3CCQ K;  2QEX K;  3CCL K;  5MLC M;  3J7Z K;  1KQS J;  1K73 L;  1WHI A;  1NJI L;  4WFN H;  3PIO H;  1YIT K;  2ZJQ H;  1VQ5 K;  3G4S K;  3CCU K;  3CCE K;  1QVG J;  1QVF J;  5GAH L;  4WCE H;  3CD6 K;  5HL7 H;  1KD1 L;  4V19 O;  1VQN K;  3I55 K;  1Q7Y L;  3OW2 J;  3CCS K;  1VQP K;  1K8A L;  1VQK K;  3CF5 H;  1JJ2 J;  4WFB H;  1N8R L;  1M90 L;  2QA4 K;  1YHQ K;  2OTL K;  1Q81 L;  1YJN K;  5GAG L;  5JVH H;  5AN9 E;  1M1K L;  1S72 K;  1YJ9 K;  3CME K;  3CCM K;  3DLL H;  1W2B J;  1YI2 K;  3CC2 K;  3I56 K;  5H1S M;  3CCV K;  1VQ9 K;  2ZJP H;  4WF9 H;  4U67 H;  4IOA H;  2ZJR H;  5DM6 H;  4UY8 K;  3CMA K;  3CCR K;  2OTJ K;  3PIP H;  1VQM K;  1VQ6 K;  3CPW J;  3CC4 K;  4WFA H;  1YJW K;  1K9M L;  3G6E K;  1VQO K;  5DM7 H;  5GAE L;  1Q82 L;  3G71 K;  3CXC J;  5JVG H;  1VQ7 K;  1VQ8 K;  1KC8 L;  1Q86 L;  5GAD L;  4IO9 H; 
#chains in the Genus database with same CATH homology
 3CCJ K;  3CC7 K;  4IOC H;  1YIJ K;  1VQ4 K;  1VQL K;  3J7Y L;  3CCQ K;  2QEX K;  3CCL K;  5MLC M;  3J7Z K;  1KQS J;  1K73 L;  1WHI A;  1NJI L;  4WFN H;  3PIO H;  1YIT K;  2ZJQ H;  1VQ5 K;  3G4S K;  3CCU K;  3CCE K;  1QVG J;  1QVF J;  5GAH L;  4WCE H;  3CD6 K;  5HL7 H;  1KD1 L;  4V19 O;  1VQN K;  3I55 K;  1Q7Y L;  3OW2 J;  3CCS K;  1VQP K;  1K8A L;  1VQK K;  3CF5 H;  1JJ2 J;  4WFB H;  1N8R L;  1M90 L;  2QA4 K;  1YHQ K;  2OTL K;  1Q81 L;  1YJN K;  5GAG L;  5JVH H;  5AN9 E;  1M1K L;  1S72 K;  1YJ9 K;  3CME K;  3CCM K;  3DLL H;  1W2B J;  1YI2 K;  3CC2 K;  3I56 K;  5H1S M;  3CCV K;  1VQ9 K;  2ZJP H;  4WF9 H;  4U67 H;  4IOA H;  2ZJR H;  5DM6 H;  4UY8 K;  3CMA K;  3CCR K;  2OTJ K;  3PIP H;  1VQM K;  1VQ6 K;  3CPW J;  3CC4 K;  4WFA H;  1YJW K;  1K9M L;  3G6E K;  1VQO K;  5DM7 H;  5GAE L;  1Q82 L;  3G71 K;  3CXC J;  5JVG H;  1VQ7 K;  1VQ8 K;  1KC8 L;  1Q86 L;  5GAD L;  4IO9 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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