4IOAJ

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
total genus 20
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4ioaJ01
5JVHJ 5HL7J 1VQMH 2OTLH 3CPWH 3I56H 1VQ9H 3G6EH 1S72H 3CCJH 3CCMH 1Q81J 3CC7H 3CC2H 4IOCJ 1YIJH 4U67J 1VQ4H 1YJNH 5DM7J 2ZJPJ 3CCLH 3DLLJ 1Y69K 1VQ7H 3CF5J 1YJ9H 4WFNJ 1K73J 2OTJH 3CD6H 1QVGH 3J7ZM 3CCUH 4WCEJ 1KD1J 2QEXH 1K8AJ 4UY8M 1VQNH 1VQ5H 1M1KJ 5GADN 3CCRH 3G4SH 1QVFH 3PIPJ 1YJWH 1YHQH 5JVGJ 2ZJRJ 3CCQH 3G71H 3CMAH 5DM6J 1VQPH 3CXCH 4IOAJ 1K9MJ 1VQOH 1W2BH 1YI2H 1N8RJ 5GAEN 1Q82J 4IO9J 3CMEH 3OW2H 2PA2A 3CCSH 3CCVH 1KC8J 5H1SO 4WFAJ 2QA4H 3I55H 1Q86J 1NJIJ 1KQSH 5MLCO 5GAGN 1VQ8H 4WFBJ 1YITH 5AN9F 4WF9J 3CCEH 2ZJQJ 1M90J 1VQKH 5GAHN 1VQ6H 1WKIA 1JJ2H 3PIOJ 1Q7YJ 1VQLH 3CC4H
chains in the Genus database with same CATH superfamily
1V97A 5HUPA 1YTDA 3WO1A 5JVHJ 3EUB4 5HL7J 1VQMH 4YYYA 2OTLH 3CPWH 1N60B 3I56H 1DGJA 3SR6C 1VQ9H 3G6EH 3AM9A 1S72H 1NVJA 3CCJH 3CCMH 1Q81J 3CC7H 5EP8A 3NVVC 3CC2H 4IOCJ 1YIJH 4U67J 1VQ4H 2B7QA 5DM7J 1YJNH 3C2FA 3VMMA 4C80A 2ZJPJ 3CCLH 1JRPB 2W3RB 2I1OA 3DLLJ 1UOUA 3ETRC 3NS1C 1N62B 4I9AA 1Y69K 4C7YA 1VQ7H 3CF5J 1YJ9H 1O4UA 4WFNJ 1YTEA 1ZXIB 1K73J 4US9A 3C2OA 3CD6H 1QVGH 2OTJH 3BIIE 3J7ZM 3FC4A 1N5WB 3CCUH 1BRWA 1VDVA 3H5QA 4WCEJ 1KD1J 3NRZC 5HULA 2WP4A 2QEXH 5AYYA 4XR5A 1K8AJ 4UY8M 1QPOA 3TQVA 3L0GA 1VQNH 1VQ5H 1OTPA 3FAHA 1M1KJ 1FFUB 1N5XA 5GADN 1X1OA 3CCRH 3G4SH 1N61B 4X46A 4EAFA 1QVFH 3PIPJ 2I14A 2E3TA 1YJWH 1YHQH 2JBMA 5JVGJ 2ZJRJ 2B7NA 2W3SB 3G71H 1AZYA 3CCQH 4USAA 3WO0A 4US8A 4YEKA 2W55B 4ZOHA 4AP8A 2Q5WE 5EY3A 4GA5A 3CMAH 5DM6J 1VQPH 3CXCH 4IOAJ 1QAPA 1K9MJ 1YTKA 3AMZA 1VQOH 4C7ZA 1W2BH 3NVYC 2W54B 1YI2H 4GA4A 3C2RA 1N63B 3C2VA 1FM0E 3NVZC 5AYXA 5HUOA 3GNNA 1N8RJ 1FIQC 3NVWC 1SIJA 4KWVA 5GAEN 1Q82J 1NVIE 4IO9J 3OW2H 3CMEH 2TPTA 1VLBA 2PA2A 3CCSH 3CCVH 5MPOC 5AYZA 2J0FA 1SB3A 1FFVB 2B7PA 1KC8J 2OMDA 4EADA 5H1SO 4WFAJ 2QA4H 2WK6A 3PAJA 1FO4A 2QIEA 3I55H 1Q86J 3B9JC 1NJIJ 1QPNA 1KQSH 1WYGA 1FMAE 5MLCO 5GAGN 1VQ8H 4LHMA 3RPFA 4WFBJ 1YITH 1QPRA 3AN1A 1JROB 5AN9F 4WF9J 3CCEH 2ZJQJ 1M90J 1VQKH 3C2EA 4GA6A 2WK5A 3WNZA 5GAHN 1WKIA 1VQ6H 1JJ2H 3L4PA 1QPQA 3PIOJ 1Q7YJ 1RM6A 2DSJA 4KWWA 1VQLH 3CC4H
chains in the Genus database with same CATH topology
5JVHJ 5HL7J 1VQMH 2OTLH 3CPWH 3I56H 1VQ9H 3G6EH 1S72H 3CCJH 3CCMH 1Q81J 3CC7H 3CC2H 4IOCJ 1YIJH 4U67J 1VQ4H 1YJNH 5DM7J 2ZJPJ 3CCLH 3DLLJ 1Y69K 1VQ7H 3CF5J 1YJ9H 4WFNJ 1K73J 2OTJH 3CD6H 1QVGH 3J7ZM 3CCUH 4WCEJ 1KD1J 2QEXH 1K8AJ 4UY8M 1VQNH 1VQ5H 1M1KJ 5GADN 3CCRH 3G4SH 1QVFH 3PIPJ 1YJWH 1YHQH 5JVGJ 2ZJRJ 3CCQH 3G71H 3CMAH 5DM6J 1VQPH 3CXCH 4IOAJ 1K9MJ 1VQOH 1W2BH 1YI2H 1N8RJ 5GAEN 1Q82J 4IO9J 3CMEH 3OW2H 2PA2A 3CCSH 3CCVH 1KC8J 5H1SO 4WFAJ 2QA4H 3I55H 1Q86J 1NJIJ 1KQSH 5MLCO 5GAGN 1VQ8H 4WFBJ 1YITH 5AN9F 4WF9J 3CCEH 2ZJQJ 1M90J 1VQKH 5GAHN 1VQ6H 1WKIA 1JJ2H 3PIOJ 1Q7YJ 1VQLH 3CC4H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JVH J;  5HL7 J;  1VQM H;  2OTL H;  3CPW H;  3I56 H;  1VQ9 H;  3G6E H;  1S72 H;  3CCJ H;  3CCM H;  1Q81 J;  3CC7 H;  3CC2 H;  4IOC J;  1YIJ H;  4U67 J;  1VQ4 H;  1YJN H;  5DM7 J;  2ZJP J;  3CCL H;  3DLL J;  1Y69 K;  1VQ7 H;  3CF5 J;  1YJ9 H;  4WFN J;  1K73 J;  2OTJ H;  3CD6 H;  1QVG H;  3J7Z M;  3CCU H;  4WCE J;  1KD1 J;  2QEX H;  1K8A J;  4UY8 M;  1VQN H;  1VQ5 H;  1M1K J;  5GAD N;  3CCR H;  3G4S H;  1QVF H;  3PIP J;  1YJW H;  1YHQ H;  5JVG J;  2ZJR J;  3CCQ H;  3G71 H;  3CMA H;  5DM6 J;  1VQP H;  3CXC H;  4IOA J;  1K9M J;  1VQO H;  1W2B H;  1YI2 H;  1N8R J;  5GAE N;  1Q82 J;  4IO9 J;  3CME H;  3OW2 H;  2PA2 A;  3CCS H;  3CCV H;  1KC8 J;  5H1S O;  4WFA J;  2QA4 H;  3I55 H;  1Q86 J;  1NJI J;  1KQS H;  5MLC O;  5GAG N;  1VQ8 H;  4WFB J;  1YIT H;  5AN9 F;  4WF9 J;  3CCE H;  2ZJQ J;  1M90 J;  1VQK H;  5GAH N;  1VQ6 H;  1WKI A;  1JJ2 H;  3PIO J;  1Q7Y J;  1VQL H;  3CC4 H; 
#chains in the Genus database with same CATH topology
 1V97 A;  5HUP A;  1YTD A;  3WO1 A;  5JVH J;  3EUB 4;  5HL7 J;  1VQM H;  4YYY A;  2OTL H;  3CPW H;  1N60 B;  3I56 H;  1DGJ A;  3SR6 C;  1VQ9 H;  3G6E H;  3AM9 A;  1S72 H;  1NVJ A;  3CCJ H;  3CCM H;  1Q81 J;  3CC7 H;  5EP8 A;  3NVV C;  3CC2 H;  4IOC J;  1YIJ H;  4U67 J;  1VQ4 H;  2B7Q A;  5DM7 J;  1YJN H;  3C2F A;  3VMM A;  4C80 A;  2ZJP J;  3CCL H;  1JRP B;  2W3R B;  2I1O A;  3DLL J;  1UOU A;  3ETR C;  3NS1 C;  1N62 B;  4I9A A;  1Y69 K;  4C7Y A;  1VQ7 H;  3CF5 J;  1YJ9 H;  1O4U A;  4WFN J;  1YTE A;  1ZXI B;  1K73 J;  4US9 A;  3C2O A;  3CD6 H;  1QVG H;  2OTJ H;  3BII E;  3J7Z M;  3FC4 A;  1N5W B;  3CCU H;  1BRW A;  1VDV A;  3H5Q A;  4WCE J;  1KD1 J;  3NRZ C;  5HUL A;  2WP4 A;  2QEX H;  5AYY A;  4XR5 A;  1K8A J;  4UY8 M;  1QPO A;  3TQV A;  3L0G A;  1VQN H;  1VQ5 H;  1OTP A;  3FAH A;  1M1K J;  1FFU B;  1N5X A;  5GAD N;  1X1O A;  3CCR H;  3G4S H;  1N61 B;  4X46 A;  4EAF A;  1QVF H;  3PIP J;  2I14 A;  2E3T A;  1YJW H;  1YHQ H;  2JBM A;  5JVG J;  2ZJR J;  2B7N A;  2W3S B;  3G71 H;  1AZY A;  3CCQ H;  4USA A;  3WO0 A;  4US8 A;  4YEK A;  2W55 B;  4ZOH A;  4AP8 A;  2Q5W E;  5EY3 A;  4GA5 A;  3CMA H;  5DM6 J;  1VQP H;  3CXC H;  4IOA J;  1QAP A;  1K9M J;  1YTK A;  3AMZ A;  1VQO H;  4C7Z A;  1W2B H;  3NVY C;  2W54 B;  1YI2 H;  4GA4 A;  3C2R A;  1N63 B;  3C2V A;  1FM0 E;  3NVZ C;  5AYX A;  5HUO A;  3GNN A;  1N8R J;  1FIQ C;  3NVW C;  1SIJ A;  4KWV A;  5GAE N;  1Q82 J;  1NVI E;  4IO9 J;  3OW2 H;  3CME H;  2TPT A;  1VLB A;  2PA2 A;  3CCS H;  3CCV H;  5MPO C;  5AYZ A;  2J0F A;  1SB3 A;  1FFV B;  2B7P A;  1KC8 J;  2OMD A;  4EAD A;  5H1S O;  4WFA J;  2QA4 H;  2WK6 A;  3PAJ A;  1FO4 A;  2QIE A;  3I55 H;  1Q86 J;  3B9J C;  1NJI J;  1QPN A;  1KQS H;  1WYG A;  1FMA E;  5MLC O;  5GAG N;  1VQ8 H;  4LHM A;  3RPF A;  4WFB J;  1YIT H;  1QPR A;  3AN1 A;  1JRO B;  5AN9 F;  4WF9 J;  3CCE H;  2ZJQ J;  1M90 J;  1VQK H;  3C2E A;  4GA6 A;  2WK5 A;  3WNZ A;  5GAH N;  1WKI A;  1VQ6 H;  1JJ2 H;  3L4P A;  1QPQ A;  3PIO J;  1Q7Y J;  1RM6 A;  2DSJ A;  4KWW A;  1VQL H;  3CC4 H; 
#chains in the Genus database with same CATH homology
 5JVH J;  5HL7 J;  1VQM H;  2OTL H;  3CPW H;  3I56 H;  1VQ9 H;  3G6E H;  1S72 H;  3CCJ H;  3CCM H;  1Q81 J;  3CC7 H;  3CC2 H;  4IOC J;  1YIJ H;  4U67 J;  1VQ4 H;  1YJN H;  5DM7 J;  2ZJP J;  3CCL H;  3DLL J;  1Y69 K;  1VQ7 H;  3CF5 J;  1YJ9 H;  4WFN J;  1K73 J;  2OTJ H;  3CD6 H;  1QVG H;  3J7Z M;  3CCU H;  4WCE J;  1KD1 J;  2QEX H;  1K8A J;  4UY8 M;  1VQN H;  1VQ5 H;  1M1K J;  5GAD N;  3CCR H;  3G4S H;  1QVF H;  3PIP J;  1YJW H;  1YHQ H;  5JVG J;  2ZJR J;  3CCQ H;  3G71 H;  3CMA H;  5DM6 J;  1VQP H;  3CXC H;  4IOA J;  1K9M J;  1VQO H;  1W2B H;  1YI2 H;  1N8R J;  5GAE N;  1Q82 J;  4IO9 J;  3CME H;  3OW2 H;  2PA2 A;  3CCS H;  3CCV H;  1KC8 J;  5H1S O;  4WFA J;  2QA4 H;  3I55 H;  1Q86 J;  1NJI J;  1KQS H;  5MLC O;  5GAG N;  1VQ8 H;  4WFB J;  1YIT H;  5AN9 F;  4WF9 J;  3CCE H;  2ZJQ J;  1M90 J;  1VQK H;  5GAH N;  1VQ6 H;  1WKI A;  1JJ2 H;  3PIO J;  1Q7Y J;  1VQL H;  3CC4 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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