4IOAJ

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 20
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4ioaJ01
1KD1J 1VQ6H 3J7ZM 3I56H 3CCUH 3CC2H 5JVHJ 1K73J 1YJ9H 3CCQH 5GAHN 1S72H 1Q7YJ 3PIPJ 4WF9J 1VQ5H 1VQ8H 3CCLH 3CCRH 3CCMH 1VQKH 3CCSH 3CXCH 3CMEH 1YI2H 3OW2H 1VQOH 4WFBJ 3G4SH 1VQNH 4IOAJ 2QEXH 3G6EH 1Y69K 3DLLJ 5GAEN 4WFNJ 3CD6H 5HL7J 3CMAH 1N8RJ 4IOCJ 5AN9F 3CCJH 3PIOJ 4WCEJ 1Q81J 3G71H 1QVFH 2PA2A 5GAGN 1YITH 1Q86J 1QVGH 1VQ9H 3CCEH 1VQLH 1YHQH 1VQMH 3CF5J 1M90J 5MLCO 3I55H 2ZJPJ 4IO9J 1W2BH 1WKIA 3CCVH 1YJNH 5JVGJ 1K8AJ 1JJ2H 5DM6J 1K9MJ 3CC4H 1KQSH 1Q82J 4WFAJ 1YIJH 2ZJQJ 4UY8M 5GADN 5DM7J 5H1SO 2ZJRJ 3CC7H 1YJWH 1KC8J 1M1KJ 2OTJH 2OTLH 1NJIJ 1VQPH 1VQ7H 1VQ4H 2QA4H 3CPWH 4U67J
chains in the Genus database with same CATH superfamily
1N62B 1KD1J 3PAJA 5MPOC 1RM6A 3J7ZM 1FFUB 1VQ6H 1JROB 2WK6A 1QPNA 1BRWA 3H5QA 3I56H 3CCUH 3CC2H 5JVHJ 1K73J 2W55B 1YJ9H 3FC4A 5AYXA 2I1OA 1SB3A 3CCQH 5GAHN 1S72H 1FM0E 1WYGA 1VLBA 3AMZA 3NS1C 2DSJA 3WO1A 3PIPJ 1Q7YJ 4WF9J 3BIIE 5AYYA 1VQ5H 1OTPA 1NVJA 1VQ8H 3C2FA 3CCLH 3SR6C 3GNNA 3L0GA 2JBMA 4AP8A 2QIEA 4GA5A 4KWVA 5HULA 4C7YA 3CCMH 3CXCH 3CCRH 3FAHA 3CCSH 3CMEH 1ZXIB 1YI2H 2W54B 4KWWA 3OW2H 1VQOH 1DGJA 4WFBJ 3G4SH 3NVYC 3EUB4 3C2RA 1VQNH 4IOAJ 1YTEA 2QEXH 3TQVA 3G6EH 1Y69K 3DLLJ 1AZYA 1JRPB 1YTDA 2B7QA 5GAEN 1VQKH 5AYZA 2I14A 4C7ZA 3ETRC 4WFNJ 3CD6H 5HL7J 3VMMA 3CMAH 1N8RJ 2OMDA 4I9AA 4IOCJ 5AN9F 3CCJH 3AM9A 3PIOJ 4WCEJ 5EY3A 2TPTA 5HUPA 3G71H 1Q81J 1QVFH 2PA2A 5GAGN 4ZOHA 2B7NA 1YITH 1Q86J 1QVGH 3WNZA 1VQ9H 2J0FA 3NVZC 4GA6A 4EAFA 1YTKA 3AN1A 3CCEH 1N5WB 1VQLH 4YYYA 1YHQH 1VQMH 1FMAE 1N60B 2W3RB 4LHMA 3NRZC 3CF5J 1O4UA 1M90J 1N5XA 5MLCO 1QPRA 2B7PA 1FO4A 3I55H 1QAPA 3C2VA 2ZJPJ 4C80A 1QPQA 4IO9J 1W2BH 1WKIA 3CCVH 1QPOA 2WP4A 3L4PA 1NVIE 1YJNH 5JVGJ 4X46A 1X1OA 1VDVA 1K8AJ 1JJ2H 5DM6J 3CC4H 1K9MJ 5HUOA 1KQSH 4GA4A 1Q82J 3NVVC 3C2OA 4WFAJ 3WO0A 4XR5A 1YIJH 1FIQC 2ZJQJ 4UY8M 5EP8A 5GADN 5DM7J 4US8A 5H1SO 2ZJRJ 3CC7H 1N61B 1YJWH 2E3TA 1KC8J 2W3SB 1M1KJ 2Q5WE 2OTJH 2WK5A 3B9JC 2OTLH 1NJIJ 4YEKA 4EADA 4US9A 1V97A 1VQPH 1UOUA 3NVWC 3C2EA 1VQ7H 1FFVB 1N63B 4USAA 1VQ4H 2QA4H 3CPWH 3RPFA 1SIJA 4U67J
chains in the Genus database with same CATH topology
1KD1J 1VQ6H 3J7ZM 3I56H 3CCUH 3CC2H 5JVHJ 1K73J 1YJ9H 3CCQH 5GAHN 1S72H 1Q7YJ 3PIPJ 4WF9J 1VQ5H 1VQ8H 3CCLH 3CCRH 3CCMH 1VQKH 3CCSH 3CXCH 3CMEH 1YI2H 3OW2H 1VQOH 4WFBJ 3G4SH 1VQNH 4IOAJ 2QEXH 3G6EH 1Y69K 3DLLJ 5GAEN 4WFNJ 3CD6H 5HL7J 3CMAH 1N8RJ 4IOCJ 5AN9F 3CCJH 3PIOJ 4WCEJ 1Q81J 3G71H 1QVFH 2PA2A 5GAGN 1YITH 1Q86J 1QVGH 1VQ9H 3CCEH 1VQLH 1YHQH 1VQMH 3CF5J 1M90J 5MLCO 3I55H 2ZJPJ 4IO9J 1W2BH 1WKIA 3CCVH 1YJNH 5JVGJ 1K8AJ 1JJ2H 5DM6J 1K9MJ 3CC4H 1KQSH 1Q82J 4WFAJ 1YIJH 2ZJQJ 4UY8M 5GADN 5DM7J 5H1SO 2ZJRJ 3CC7H 1YJWH 1KC8J 1M1KJ 2OTJH 2OTLH 1NJIJ 1VQPH 1VQ7H 1VQ4H 2QA4H 3CPWH 4U67J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KD1 J;  1VQ6 H;  3J7Z M;  3I56 H;  3CCU H;  3CC2 H;  5JVH J;  1K73 J;  1YJ9 H;  3CCQ H;  5GAH N;  1S72 H;  1Q7Y J;  3PIP J;  4WF9 J;  1VQ5 H;  1VQ8 H;  3CCL H;  3CCR H;  3CCM H;  1VQK H;  3CCS H;  3CXC H;  3CME H;  1YI2 H;  3OW2 H;  1VQO H;  4WFB J;  3G4S H;  1VQN H;  4IOA J;  2QEX H;  3G6E H;  1Y69 K;  3DLL J;  5GAE N;  4WFN J;  3CD6 H;  5HL7 J;  3CMA H;  1N8R J;  4IOC J;  5AN9 F;  3CCJ H;  3PIO J;  4WCE J;  1Q81 J;  3G71 H;  1QVF H;  2PA2 A;  5GAG N;  1YIT H;  1Q86 J;  1QVG H;  1VQ9 H;  3CCE H;  1VQL H;  1YHQ H;  1VQM H;  3CF5 J;  1M90 J;  5MLC O;  3I55 H;  2ZJP J;  4IO9 J;  1W2B H;  1WKI A;  3CCV H;  1YJN H;  5JVG J;  1K8A J;  1JJ2 H;  5DM6 J;  1K9M J;  3CC4 H;  1KQS H;  1Q82 J;  4WFA J;  1YIJ H;  2ZJQ J;  4UY8 M;  5GAD N;  5DM7 J;  5H1S O;  2ZJR J;  3CC7 H;  1YJW H;  1KC8 J;  1M1K J;  2OTJ H;  2OTL H;  1NJI J;  1VQP H;  1VQ7 H;  1VQ4 H;  2QA4 H;  3CPW H;  4U67 J; 
#chains in the Genus database with same CATH topology
 1N62 B;  1KD1 J;  3PAJ A;  5MPO C;  1RM6 A;  3J7Z M;  1FFU B;  1VQ6 H;  1JRO B;  2WK6 A;  1QPN A;  1BRW A;  3H5Q A;  3I56 H;  3CCU H;  3CC2 H;  5JVH J;  1K73 J;  2W55 B;  1YJ9 H;  3FC4 A;  5AYX A;  2I1O A;  1SB3 A;  3CCQ H;  5GAH N;  1S72 H;  1FM0 E;  1WYG A;  1VLB A;  3AMZ A;  3NS1 C;  2DSJ A;  3WO1 A;  3PIP J;  1Q7Y J;  4WF9 J;  3BII E;  5AYY A;  1VQ5 H;  1OTP A;  1NVJ A;  1VQ8 H;  3C2F A;  3CCL H;  3SR6 C;  3GNN A;  3L0G A;  2JBM A;  4AP8 A;  2QIE A;  4GA5 A;  4KWV A;  5HUL A;  4C7Y A;  3CCM H;  3CXC H;  3CCR H;  3FAH A;  3CCS H;  3CME H;  1ZXI B;  1YI2 H;  2W54 B;  4KWW A;  3OW2 H;  1VQO H;  1DGJ A;  4WFB J;  3G4S H;  3NVY C;  3EUB 4;  3C2R A;  1VQN H;  4IOA J;  1YTE A;  2QEX H;  3TQV A;  3G6E H;  1Y69 K;  3DLL J;  1AZY A;  1JRP B;  1YTD A;  2B7Q A;  5GAE N;  1VQK H;  5AYZ A;  2I14 A;  4C7Z A;  3ETR C;  4WFN J;  3CD6 H;  5HL7 J;  3VMM A;  3CMA H;  1N8R J;  2OMD A;  4I9A A;  4IOC J;  5AN9 F;  3CCJ H;  3AM9 A;  3PIO J;  4WCE J;  5EY3 A;  2TPT A;  5HUP A;  3G71 H;  1Q81 J;  1QVF H;  2PA2 A;  5GAG N;  4ZOH A;  2B7N A;  1YIT H;  1Q86 J;  1QVG H;  3WNZ A;  1VQ9 H;  2J0F A;  3NVZ C;  4GA6 A;  4EAF A;  1YTK A;  3AN1 A;  3CCE H;  1N5W B;  1VQL H;  4YYY A;  1YHQ H;  1VQM H;  1FMA E;  1N60 B;  2W3R B;  4LHM A;  3NRZ C;  3CF5 J;  1O4U A;  1M90 J;  1N5X A;  5MLC O;  1QPR A;  2B7P A;  1FO4 A;  3I55 H;  1QAP A;  3C2V A;  2ZJP J;  4C80 A;  1QPQ A;  4IO9 J;  1W2B H;  1WKI A;  3CCV H;  1QPO A;  2WP4 A;  3L4P A;  1NVI E;  1YJN H;  5JVG J;  4X46 A;  1X1O A;  1VDV A;  1K8A J;  1JJ2 H;  5DM6 J;  3CC4 H;  1K9M J;  5HUO A;  1KQS H;  4GA4 A;  1Q82 J;  3NVV C;  3C2O A;  4WFA J;  3WO0 A;  4XR5 A;  1YIJ H;  1FIQ C;  2ZJQ J;  4UY8 M;  5EP8 A;  5GAD N;  5DM7 J;  4US8 A;  5H1S O;  2ZJR J;  3CC7 H;  1N61 B;  1YJW H;  2E3T A;  1KC8 J;  2W3S B;  1M1K J;  2Q5W E;  2OTJ H;  2WK5 A;  3B9J C;  2OTL H;  1NJI J;  4YEK A;  4EAD A;  4US9 A;  1V97 A;  1VQP H;  1UOU A;  3NVW C;  3C2E A;  1VQ7 H;  1FFV B;  1N63 B;  4USA A;  1VQ4 H;  2QA4 H;  3CPW H;  3RPF A;  1SIJ A;  4U67 J; 
#chains in the Genus database with same CATH homology
 1KD1 J;  1VQ6 H;  3J7Z M;  3I56 H;  3CCU H;  3CC2 H;  5JVH J;  1K73 J;  1YJ9 H;  3CCQ H;  5GAH N;  1S72 H;  1Q7Y J;  3PIP J;  4WF9 J;  1VQ5 H;  1VQ8 H;  3CCL H;  3CCR H;  3CCM H;  1VQK H;  3CCS H;  3CXC H;  3CME H;  1YI2 H;  3OW2 H;  1VQO H;  4WFB J;  3G4S H;  1VQN H;  4IOA J;  2QEX H;  3G6E H;  1Y69 K;  3DLL J;  5GAE N;  4WFN J;  3CD6 H;  5HL7 J;  3CMA H;  1N8R J;  4IOC J;  5AN9 F;  3CCJ H;  3PIO J;  4WCE J;  1Q81 J;  3G71 H;  1QVF H;  2PA2 A;  5GAG N;  1YIT H;  1Q86 J;  1QVG H;  1VQ9 H;  3CCE H;  1VQL H;  1YHQ H;  1VQM H;  3CF5 J;  1M90 J;  5MLC O;  3I55 H;  2ZJP J;  4IO9 J;  1W2B H;  1WKI A;  3CCV H;  1YJN H;  5JVG J;  1K8A J;  1JJ2 H;  5DM6 J;  1K9M J;  3CC4 H;  1KQS H;  1Q82 J;  4WFA J;  1YIJ H;  2ZJQ J;  4UY8 M;  5GAD N;  5DM7 J;  5H1S O;  2ZJR J;  3CC7 H;  1YJW H;  1KC8 J;  1M1K J;  2OTJ H;  2OTL H;  1NJI J;  1VQP H;  1VQ7 H;  1VQ4 H;  2QA4 H;  3CPW H;  4U67 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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