4IOAK

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
113
structure length
113
Chain Sequence
HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 36
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 4ioaK00
4WFBK 4UY8N 5DM7K 4WCEK 4WF9K 5HL7K 2ZJRK 5GAHO 4IOAK 5GADO 5GAEO 3CF5K 5DM6K 4IO9K 2ZJQK 4IOCK 3PIOK 5MLCP 4WFAK 5JVGK 4WFNK 3DLLK 5GAGO 3J7ZN 2CQMA 2ZJPK 3PIPK 5JVHK 5H1SP 4U67K 1GD8A
chains in the Genus database with same CATH superfamily
4WFBK 4UY8N 5DM7K 4WCEK 4WF9K 5HL7K 2ZJRK 5GAHO 4IOAK 5GADO 5GAEO 3CF5K 5DM6K 4IO9K 2ZJQK 4IOCK 3PIOK 5MLCP 4WFAK 5JVGK 4WFNK 3DLLK 5GAGO 3J7ZN 2CQMA 2ZJPK 3PIPK 5JVHK 5H1SP 4U67K 1GD8A
chains in the Genus database with same CATH topology
4WFBK 4UY8N 5DM7K 4WCEK 4WF9K 5HL7K 2ZJRK 5GAHO 4IOAK 5GADO 5GAEO 3CF5K 5DM6K 4IO9K 2ZJQK 4IOCK 3PIOK 5MLCP 4WFAK 5JVGK 4WFNK 3DLLK 5GAGO 3J7ZN 2CQMA 2ZJPK 3PIPK 5JVHK 5H1SP 4U67K 1GD8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFB K;  4UY8 N;  5DM7 K;  4WCE K;  4WF9 K;  5HL7 K;  2ZJR K;  5GAH O;  4IOA K;  5GAD O;  5GAE O;  3CF5 K;  5DM6 K;  4IO9 K;  2ZJQ K;  4IOC K;  3PIO K;  5MLC P;  4WFA K;  5JVG K;  4WFN K;  3DLL K;  5GAG O;  3J7Z N;  2CQM A;  2ZJP K;  3PIP K;  5JVH K;  5H1S P;  4U67 K;  1GD8 A; 
#chains in the Genus database with same CATH topology
 4WFB K;  4UY8 N;  5DM7 K;  4WCE K;  4WF9 K;  5HL7 K;  2ZJR K;  5GAH O;  4IOA K;  5GAD O;  5GAE O;  3CF5 K;  5DM6 K;  4IO9 K;  2ZJQ K;  4IOC K;  3PIO K;  5MLC P;  4WFA K;  5JVG K;  4WFN K;  3DLL K;  5GAG O;  3J7Z N;  2CQM A;  2ZJP K;  3PIP K;  5JVH K;  5H1S P;  4U67 K;  1GD8 A; 
#chains in the Genus database with same CATH homology
 4WFB K;  4UY8 N;  5DM7 K;  4WCE K;  4WF9 K;  5HL7 K;  2ZJR K;  5GAH O;  4IOA K;  5GAD O;  5GAE O;  3CF5 K;  5DM6 K;  4IO9 K;  2ZJQ K;  4IOC K;  3PIO K;  5MLC P;  4WFA K;  5JVG K;  4WFN K;  3DLL K;  5GAG O;  3J7Z N;  2CQM A;  2ZJP K;  3PIP K;  5JVH K;  5H1S P;  4U67 K;  1GD8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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