4IOAS

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
175
structure length
175
Chain Sequence
b'MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
molecule tags Ribosome/ribosome inhibitor
total genus 25
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4ioaS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4ioaS02
4WFAS 3DLLS 1DFUP 4JXZA 5JVGS 1QRUA 4UY88 5DM6S 5GAHW 1QRTA 1O0BA 4WFBS 3J7ZV 4IOAS 4WFNS 4H3SA 1ZJWA 1B75A 5GAEW 3PIPS 5IZNA 5DM7S 4IOCS 2ZJRS 5JVHS 4IO9S 2ZJQS 5GAGW 1QTQA 1EXDA 1FEUA 5HL7S 4WF9S 4WCES 5GADW 3CF5S 1GTRA 2RE8A 1NYLA 3PIOS 4U67S 4JXXA 2ZJPS 2RD2A 1D6KA 1GTSA 1QRSA 3AIIA 4P2BA 1EUQA 5BNZA 1EUYA 1O0CA 4JYZA 2HZ7A
chains in the Genus database with same CATH superfamily
5FLMC 2O5JA 3PO3C 1DFUP 5JVGS 2PPBA 1YNNA 2PA8D 3W2VB 4KN7A 2JA6C 4X6AC 5C3EC 1ZJWA 1HQMA 3HOUC 2Z0YA 5DM7S 4IO9S 5IP9C 2WAQD 3S15C 1ZYRA 3LYWA 4LJZA 2PI8A 2JA8C 2PNWA 3DXJA 4LLGA 4J3CA 4YFKA 4Y52C 4C3IC 5IYBC 2PJJA 3S2HC 4C2MC 2O5IA 4V194 2RE8A 3GTOC 3PIOS 4U67S 4JXXA 1BDFA 3H0GC 4LK0A 1D6KA 5IYCC 3GTJC 3S1NC 4A93C 4BXXC 1Y1VC 2R7ZC 1GTSA 4KMUA 3FKIC 1I50C 2AE0X 5BNZA 2KXYA 2EGWA 4MQ9A 2B63C 4A3CC 5HQHA 4AYBD 4H4KA 4G7OA 3DLLS 2PMZD 1Y1WC 4JXZA 5TMFA 3GTMC 1IW7A 4A3BC 5GAHW 3I4MC 4L69A 3RZOC 4G7ZA 3J7ZV 4IOAS 3I4NC 4WFNS 5C4JC 4A3IC 3H3VD 1SFOC 4Q5SA 5IZNA 1SMYA 2GAEA 1R9TC 2ZJQS 5GAGW 4OIRA 2NVYC 1FEUA 2E2HC 4JK1A 1YNJA 4WCES 4XSXA 3CF5S 4C3HC 4XLPA 4A3GC 4YFNA 2NVTC 3S1QC 1I3QC 2PICA 4E8BA 3KW2A 2YU9C 2R92C 5C44C 3WODA 4C3JC 2Y0SD 4YFXA 4Q4ZA 2VUMC 4LK1A 3HOVC 2E2JC 4A3JC 3S16C 2NVXC 4NOIA 2CX8A 3M3YC 3K7AC 1TWAC 1Z85A 4WFAS 2A6EA 4QIWD 1QRUA 5C4XC 1TWCC 4UY88 2BE5A 4KN4A 1QRTA 1WCMC 1I6HC 2WB1D 5TMCA 5IYDC 4H3SA 1B75A 5GAEW 5JVHS 2JA5C 1QTQA 4QJVA 4MEXA 3S2DC 2A69A 2NWAA 1TWGC 3HKZD 5HL7S 4WF9S 1TWHC 3S17C 3S1RC 4BBSC 5GADW 3GTGC 4BY1C 4OIQA 2E2IC 1K83C 4A3KC 1NYLA 3HOYC 2L3UA 2RD2A 3X1LB 3W2WB 3RZDC 2EGVA 2L5NA 1TWFC 2R93C 4P2BA 1VHKA 2G5DA 1EUQA 4XSZA 3EQLA 4A3MC 3S14C 4BBRC 3M4OC 4BY7C 4JYZA 2A68A 4YG2A 1V6ZA 2NVQC 2G6GA 2CW0A 4OIPA 5DM6S 5D4DA 1O0BA 4WFBS 3HOZC 2KQ1A 1UDXA 4A3EC 3PIPS 3PO2C 4XLNA 4IOCS 2ZJRS 2A6HA 3CZBA 4Y7NC 4A3DC 1I6VA 1EXDA 4ZH4A 4G7HA 5IP7C 1GTRA 4MEYA 4A3FC 3HOWC 2ZJPS 2JA7C 1VHYA 3GTKC 3GTLC 4A3LC 3HOXC 1NXZA 3S1MC 1QRSA 3AIIA 3CQZC 4GZYA 4OIOA 1EUYA 4OINA 3GTQC 3GTPC 1O0CA 2KPUA 2HZ7A
chains in the Genus database with same CATH topology
4WFAS 3DLLS 1DFUP 4JXZA 5JVGS 1QRUA 4UY88 5DM6S 5GAHW 1QRTA 3W2VB 4WFBS 1O0BA 3J7ZV 4IOAS 4WFNS 4H3SA 1ZJWA 1UDXA 5GAEW 3PIPS 1B75A 5IZNA 5DM7S 4IOCS 2ZJRS 5JVHS 4IO9S 2ZJQS 5GAGW 1QTQA 1EXDA 1FEUA 5HL7S 4WF9S 4WCES 5GADW 3CF5S 4V194 1GTRA 2RE8A 1NYLA 3PIOS 4U67S 4JXXA 2ZJPS 2RD2A 1D6KA 3X1LB 3W2WB 1GTSA 1QRSA 3AIIA 4P2BA 1EUQA 5BNZA 4JYZA 1EUYA 1O0CA 4H4KA 2HZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFA S;  3DLL S;  1DFU P;  4JXZ A;  5JVG S;  1QRU A;  4UY8 8;  5DM6 S;  5GAH W;  1QRT A;  1O0B A;  4WFB S;  3J7Z V;  4IOA S;  4WFN S;  4H3S A;  1ZJW A;  1B75 A;  5GAE W;  3PIP S;  5IZN A;  5DM7 S;  4IOC S;  2ZJR S;  5JVH S;  4IO9 S;  2ZJQ S;  5GAG W;  1QTQ A;  1EXD A;  1FEU A;  5HL7 S;  4WF9 S;  4WCE S;  5GAD W;  3CF5 S;  1GTR A;  2RE8 A;  1NYL A;  3PIO S;  4U67 S;  4JXX A;  2ZJP S;  2RD2 A;  1D6K A;  1GTS A;  1QRS A;  3AII A;  4P2B A;  1EUQ A;  5BNZ A;  1EUY A;  1O0C A;  4JYZ A;  2HZ7 A; 
#chains in the Genus database with same CATH topology
 5FLM C;  2O5J A;  3PO3 C;  1DFU P;  5JVG S;  2PPB A;  1YNN A;  2PA8 D;  3W2V B;  4KN7 A;  2JA6 C;  4X6A C;  5C3E C;  1ZJW A;  1HQM A;  3HOU C;  2Z0Y A;  5DM7 S;  4IO9 S;  5IP9 C;  2WAQ D;  3S15 C;  1ZYR A;  3LYW A;  4LJZ A;  2PI8 A;  2JA8 C;  2PNW A;  3DXJ A;  4LLG A;  4J3C A;  4YFK A;  4Y52 C;  4C3I C;  5IYB C;  2PJJ A;  3S2H C;  4C2M C;  2O5I A;  4V19 4;  2RE8 A;  3GTO C;  3PIO S;  4U67 S;  4JXX A;  1BDF A;  3H0G C;  4LK0 A;  1D6K A;  5IYC C;  3GTJ C;  3S1N C;  4A93 C;  4BXX C;  1Y1V C;  2R7Z C;  1GTS A;  4KMU A;  3FKI C;  1I50 C;  2AE0 X;  5BNZ A;  2KXY A;  2EGW A;  4MQ9 A;  2B63 C;  4A3C C;  5HQH A;  4AYB D;  4H4K A;  4G7O A;  3DLL S;  2PMZ D;  1Y1W C;  4JXZ A;  5TMF A;  3GTM C;  1IW7 A;  4A3B C;  5GAH W;  3I4M C;  4L69 A;  3RZO C;  4G7Z A;  3J7Z V;  4IOA S;  3I4N C;  4WFN S;  5C4J C;  4A3I C;  3H3V D;  1SFO C;  4Q5S A;  5IZN A;  1SMY A;  2GAE A;  1R9T C;  2ZJQ S;  5GAG W;  4OIR A;  2NVY C;  1FEU A;  2E2H C;  4JK1 A;  1YNJ A;  4WCE S;  4XSX A;  3CF5 S;  4C3H C;  4XLP A;  4A3G C;  4YFN A;  2NVT C;  3S1Q C;  1I3Q C;  2PIC A;  4E8B A;  3KW2 A;  2YU9 C;  2R92 C;  5C44 C;  3WOD A;  4C3J C;  2Y0S D;  4YFX A;  4Q4Z A;  2VUM C;  4LK1 A;  3HOV C;  2E2J C;  4A3J C;  3S16 C;  2NVX C;  4NOI A;  2CX8 A;  3M3Y C;  3K7A C;  1TWA C;  1Z85 A;  4WFA S;  2A6E A;  4QIW D;  1QRU A;  5C4X C;  1TWC C;  4UY8 8;  2BE5 A;  4KN4 A;  1QRT A;  1WCM C;  1I6H C;  2WB1 D;  5TMC A;  5IYD C;  4H3S A;  1B75 A;  5GAE W;  5JVH S;  2JA5 C;  1QTQ A;  4QJV A;  4MEX A;  3S2D C;  2A69 A;  2NWA A;  1TWG C;  3HKZ D;  5HL7 S;  4WF9 S;  1TWH C;  3S17 C;  3S1R C;  4BBS C;  5GAD W;  3GTG C;  4BY1 C;  4OIQ A;  2E2I C;  1K83 C;  4A3K C;  1NYL A;  3HOY C;  2L3U A;  2RD2 A;  3X1L B;  3W2W B;  3RZD C;  2EGV A;  2L5N A;  1TWF C;  2R93 C;  4P2B A;  1VHK A;  2G5D A;  1EUQ A;  4XSZ A;  3EQL A;  4A3M C;  3S14 C;  4BBR C;  3M4O C;  4BY7 C;  4JYZ A;  2A68 A;  4YG2 A;  1V6Z A;  2NVQ C;  2G6G A;  2CW0 A;  4OIP A;  5DM6 S;  5D4D A;  1O0B A;  4WFB S;  3HOZ C;  2KQ1 A;  1UDX A;  4A3E C;  3PIP S;  3PO2 C;  4XLN A;  4IOC S;  2ZJR S;  2A6H A;  3CZB A;  4Y7N C;  4A3D C;  1I6V A;  1EXD A;  4ZH4 A;  4G7H A;  5IP7 C;  1GTR A;  4MEY A;  4A3F C;  3HOW C;  2ZJP S;  2JA7 C;  1VHY A;  3GTK C;  3GTL C;  4A3L C;  3HOX C;  1NXZ A;  3S1M C;  1QRS A;  3AII A;  3CQZ C;  4GZY A;  4OIO A;  1EUY A;  4OIN A;  3GTQ C;  3GTP C;  1O0C A;  2KPU A;  2HZ7 A; 
#chains in the Genus database with same CATH homology
 4WFA S;  3DLL S;  1DFU P;  4JXZ A;  5JVG S;  1QRU A;  4UY8 8;  5DM6 S;  5GAH W;  1QRT A;  3W2V B;  4WFB S;  1O0B A;  3J7Z V;  4IOA S;  4WFN S;  4H3S A;  1ZJW A;  1UDX A;  5GAE W;  3PIP S;  1B75 A;  5IZN A;  5DM7 S;  4IOC S;  2ZJR S;  5JVH S;  4IO9 S;  2ZJQ S;  5GAG W;  1QTQ A;  1EXD A;  1FEU A;  5HL7 S;  4WF9 S;  4WCE S;  5GAD W;  3CF5 S;  4V19 4;  1GTR A;  2RE8 A;  1NYL A;  3PIO S;  4U67 S;  4JXX A;  2ZJP S;  2RD2 A;  1D6K A;  3X1L B;  3W2W B;  1GTS A;  1QRS A;  3AII A;  4P2B A;  1EUQ A;  5BNZ A;  4JYZ A;  1EUY A;  1O0C A;  4H4K A;  2HZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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