4IOAS

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
175
structure length
175
Chain Sequence
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
total genus 25
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4ioaS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4ioaS02
1O0BA 2HZ7A 5HL7S 1ZJWA 1NYLA 3J7ZV 3PIPS 2RD2A 5JVGS 3DLLS 4JYZA 2ZJQS 1D6KA 4UY88 2ZJPS 3CF5S 1EUQA 1QRSA 4IOCS 5IZNA 4IOAS 1GTSA 4JXZA 4WCES 1EUYA 1FEUA 4WFAS 1DFUP 4JXXA 5GAGW 4WFNS 5DM7S 2ZJRS 1QTQA 4H3SA 4WF9S 4U67S 1EXDA 5JVHS 1QRTA 1B75A 4P2BA 5BNZA 5DM6S 3AIIA 5GADW 4IO9S 1QRUA 4WFBS 2RE8A 1O0CA 5GAEW 3PIOS 1GTRA 5GAHW
chains in the Genus database with same CATH superfamily
1QRTA 1O0BA 1ZJWA 3J7ZV 2EGVA 2RD2A 4JYZA 4MEYA 2PI8A 1D6KA 1Y1WC 2BE5A 3RZOC 3CF5S 1QRSA 1K83C 4IOCS 4XLNA 2KQ1A 1VHKA 4IOAS 4G7HA 4WCES 1EUYA 3DXJA 2NVXC 5IP9C 5DM7S 2ZJRS 4G7OA 4A3GC 1I6HC 2AE0X 4C3IC 3CQZC 4KN4A 4BBRC 1HQMA 1I3QC 5C3EC 4OINA 3HOZC 2E2JC 2KPUA 3S15C 2WAQD 5TMFA 4AYBD 5GADW 4YG2A 4OIRA 3HOUC 2CW0A 4YFNA 4ZH4A 2O5IA 4NOIA 5GAEW 4YFXA 1NYLA 3PIPS 3DLLS 3H0GC 3GTKC 2JA6C 3S2DC 4QJVA 3RZDC 2YU9C 2R92C 4BY1C 5IZNA 3I4MC 5FLMC 4A3FC 2Y0SD 1BDFA 4A3LC 4JXXA 4WFNS 1NXZA 4E8BA 2NWAA 1Y1VC 4LJZA 4KMUA 2B63C 2CX8A 4LLGA 1IW7A 2E2IC 5JVHS 1I50C 5IYDC 3LYWA 1TWGC 5BNZA 5DM6S 3HOVC 3HOYC 3AIIA 3HKZD 1V6ZA 4G7ZA 4IO9S 4MEXA 2A6HA 3GTQC 4WFBS 4V194 3GTLC 4L69A 1WCMC 4A3KC 4OIOA 4KN7A 2PNWA 5D4DA 4Y52C 4A3IC 5HL7S 3K7AC 2E2HC 3W2VB 3M4OC 2ZJQS 4MQ9A 4UY88 4XLPA 2ZJPS 3HOWC 5HQHA 2NVTC 3S14C 4A3BC 4J3CA 4OIQA 1TWCC 1GTSA 4A3DC 4JXZA 2KXYA 5C4XC 2PA8D 4GZYA 4WFAS 3S16C 2O5JA 2PICA 3S2HC 2A68A 4WF9S 3S1NC 1TWHC 4C3HC 4U67S 4A3JC 3PO3C 3GTPC 4A3EC 3GTGC 2Z0YA 2GAEA 1R9TC 5C44C 4XSXA 4LK1A 2A69A 5IP7C 2NVQC 3H3VD 2JA5C 4Q5SA 2RE8A 1O0CA 1SMYA 4LK0A 2A6EA 2VUMC 4YFKA 1Z85A 3PIOS 3GTJC 2JA8C 2HZ7A 1YNNA 2EGWA 2NVYC 5JVGS 4Q4ZA 5IYCC 2JA7C 2WB1D 3GTOC 1YNJA 1EUQA 1TWFC 3S17C 3W2WB 1TWAC 3S1MC 2L5NA 1FEUA 1SFOC 4BY7C 1DFUP 3EQLA 1VHYA 4QIWD 5GAGW 1ZYRA 3FKIC 3PO2C 1QTQA 4H3SA 3X1LB 1I6VA 3HOXC 2G5DA 4C3JC 3S1RC 4XSZA 4OIPA 2PPBA 5IYBC 2L3UA 5TMCA 1EXDA 4Y7NC 4A3CC 2PMZD 3I4NC 2PJJA 1B75A 4P2BA 4C2MC 2R7ZC 4BXXC 4H4KA 4X6AC 1QRUA 2G6GA 3KW2A 3CZBA 5C4JC 3S1QC 4A93C 4BBSC 1UDXA 4JK1A 3WODA 4A3MC 3M3YC 2R93C 3GTMC 1GTRA 5GAHW
chains in the Genus database with same CATH topology
1O0BA 2HZ7A 5HL7S 1ZJWA 1NYLA 3W2VB 3J7ZV 3PIPS 2RD2A 3DLLS 5JVGS 2ZJQS 4JYZA 1D6KA 4UY88 2ZJPS 3CF5S 1EUQA 1QRSA 4IOCS 5IZNA 4IOAS 3W2WB 1GTSA 4JXZA 4WCES 1EUYA 1FEUA 4WFAS 1DFUP 4JXXA 5GAGW 4WFNS 5DM7S 2ZJRS 1QTQA 4H3SA 3X1LB 4WF9S 4U67S 1EXDA 5JVHS 1QRTA 1B75A 4P2BA 5BNZA 5DM6S 4H4KA 3AIIA 5GADW 4IO9S 1QRUA 4WFBS 4V194 2RE8A 1O0CA 1UDXA 5GAEW 3PIOS 1GTRA 5GAHW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O0B A;  2HZ7 A;  5HL7 S;  1ZJW A;  1NYL A;  3J7Z V;  3PIP S;  2RD2 A;  5JVG S;  3DLL S;  4JYZ A;  2ZJQ S;  1D6K A;  4UY8 8;  2ZJP S;  3CF5 S;  1EUQ A;  1QRS A;  4IOC S;  5IZN A;  4IOA S;  1GTS A;  4JXZ A;  4WCE S;  1EUY A;  1FEU A;  4WFA S;  1DFU P;  4JXX A;  5GAG W;  4WFN S;  5DM7 S;  2ZJR S;  1QTQ A;  4H3S A;  4WF9 S;  4U67 S;  1EXD A;  5JVH S;  1QRT A;  1B75 A;  4P2B A;  5BNZ A;  5DM6 S;  3AII A;  5GAD W;  4IO9 S;  1QRU A;  4WFB S;  2RE8 A;  1O0C A;  5GAE W;  3PIO S;  1GTR A;  5GAH W; 
#chains in the Genus database with same CATH topology
 1QRT A;  1O0B A;  1ZJW A;  3J7Z V;  2EGV A;  2RD2 A;  4JYZ A;  4MEY A;  2PI8 A;  1D6K A;  1Y1W C;  2BE5 A;  3RZO C;  3CF5 S;  1QRS A;  1K83 C;  4IOC S;  4XLN A;  2KQ1 A;  1VHK A;  4IOA S;  4G7H A;  4WCE S;  1EUY A;  3DXJ A;  2NVX C;  5IP9 C;  5DM7 S;  2ZJR S;  4G7O A;  4A3G C;  1I6H C;  2AE0 X;  4C3I C;  3CQZ C;  4KN4 A;  4BBR C;  1HQM A;  1I3Q C;  5C3E C;  4OIN A;  3HOZ C;  2E2J C;  2KPU A;  3S15 C;  2WAQ D;  5TMF A;  4AYB D;  5GAD W;  4YG2 A;  4OIR A;  3HOU C;  2CW0 A;  4YFN A;  4ZH4 A;  2O5I A;  4NOI A;  5GAE W;  4YFX A;  1NYL A;  3PIP S;  3DLL S;  3H0G C;  3GTK C;  2JA6 C;  3S2D C;  4QJV A;  3RZD C;  2YU9 C;  2R92 C;  4BY1 C;  5IZN A;  3I4M C;  5FLM C;  4A3F C;  2Y0S D;  1BDF A;  4A3L C;  4JXX A;  4WFN S;  1NXZ A;  4E8B A;  2NWA A;  1Y1V C;  4LJZ A;  4KMU A;  2B63 C;  2CX8 A;  4LLG A;  1IW7 A;  2E2I C;  5JVH S;  1I50 C;  5IYD C;  3LYW A;  1TWG C;  5BNZ A;  5DM6 S;  3HOV C;  3HOY C;  3AII A;  3HKZ D;  1V6Z A;  4G7Z A;  4IO9 S;  4MEX A;  2A6H A;  3GTQ C;  4WFB S;  4V19 4;  3GTL C;  4L69 A;  1WCM C;  4A3K C;  4OIO A;  4KN7 A;  2PNW A;  5D4D A;  4Y52 C;  4A3I C;  5HL7 S;  3K7A C;  2E2H C;  3W2V B;  3M4O C;  2ZJQ S;  4MQ9 A;  4UY8 8;  4XLP A;  2ZJP S;  3HOW C;  5HQH A;  2NVT C;  3S14 C;  4A3B C;  4J3C A;  4OIQ A;  1TWC C;  1GTS A;  4A3D C;  4JXZ A;  2KXY A;  5C4X C;  2PA8 D;  4GZY A;  4WFA S;  3S16 C;  2O5J A;  2PIC A;  3S2H C;  2A68 A;  4WF9 S;  3S1N C;  1TWH C;  4C3H C;  4U67 S;  4A3J C;  3PO3 C;  3GTP C;  4A3E C;  3GTG C;  2Z0Y A;  2GAE A;  1R9T C;  5C44 C;  4XSX A;  4LK1 A;  2A69 A;  5IP7 C;  2NVQ C;  3H3V D;  2JA5 C;  4Q5S A;  2RE8 A;  1O0C A;  1SMY A;  4LK0 A;  2A6E A;  2VUM C;  4YFK A;  1Z85 A;  3PIO S;  3GTJ C;  2JA8 C;  2HZ7 A;  1YNN A;  2EGW A;  2NVY C;  5JVG S;  4Q4Z A;  5IYC C;  2JA7 C;  2WB1 D;  3GTO C;  1YNJ A;  1EUQ A;  1TWF C;  3S17 C;  3W2W B;  1TWA C;  3S1M C;  2L5N A;  1FEU A;  1SFO C;  4BY7 C;  1DFU P;  3EQL A;  1VHY A;  4QIW D;  5GAG W;  1ZYR A;  3FKI C;  3PO2 C;  1QTQ A;  4H3S A;  3X1L B;  1I6V A;  3HOX C;  2G5D A;  4C3J C;  3S1R C;  4XSZ A;  4OIP A;  2PPB A;  5IYB C;  2L3U A;  5TMC A;  1EXD A;  4Y7N C;  4A3C C;  2PMZ D;  3I4N C;  2PJJ A;  1B75 A;  4P2B A;  4C2M C;  2R7Z C;  4BXX C;  4H4K A;  4X6A C;  1QRU A;  2G6G A;  3KW2 A;  3CZB A;  5C4J C;  3S1Q C;  4A93 C;  4BBS C;  1UDX A;  4JK1 A;  3WOD A;  4A3M C;  3M3Y C;  2R93 C;  3GTM C;  1GTR A;  5GAH W; 
#chains in the Genus database with same CATH homology
 1O0B A;  2HZ7 A;  5HL7 S;  1ZJW A;  1NYL A;  3W2V B;  3J7Z V;  3PIP S;  2RD2 A;  3DLL S;  5JVG S;  2ZJQ S;  4JYZ A;  1D6K A;  4UY8 8;  2ZJP S;  3CF5 S;  1EUQ A;  1QRS A;  4IOC S;  5IZN A;  4IOA S;  3W2W B;  1GTS A;  4JXZ A;  4WCE S;  1EUY A;  1FEU A;  4WFA S;  1DFU P;  4JXX A;  5GAG W;  4WFN S;  5DM7 S;  2ZJR S;  1QTQ A;  4H3S A;  3X1L B;  4WF9 S;  4U67 S;  1EXD A;  5JVH S;  1QRT A;  1B75 A;  4P2B A;  5BNZ A;  5DM6 S;  4H4K A;  3AII A;  5GAD W;  4IO9 S;  1QRU A;  4WFB S;  4V19 4;  2RE8 A;  1O0C A;  1UDX A;  5GAE W;  3PIO S;  1GTR A;  5GAH W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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