4IOAW

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
55
structure length
55
Chain Sequence
MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 13
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 4ioaW00
1BXYA 4IOAW 1VQ6W 2ZJQW 1K73X 5DM7W 5JVGW 5GAGa 3CXCV 3G6EW 3CCMW 1QVGV 1W2BV 4U67W 3I56W 1YJWW 1VQKW 1YJNW 1M1KX 3CC4W 4IO9W 3PIPW 1KC8X 2ZJRW 1VQ7W 1YJ9W 3DLLW 3J7ZZ 5GAEa 1NJIX 1VQ9W 3CCLW 1K9MX 1KQSV 4WFAW 1VQNW 3CD6W 3CC7W 1VQOW 3G4SW 4WF9W 4WFNW 4WFBW 1M90X 1VQ4W 1QVFV 3CF5W 5DM6W 3OW2V 1Q7YX 3CC2W 5JVHW 1Q86X 1YIJW 2OTLW 3CCSW 3G71W 4UY8Z 5GAHa 1YHQW 3PIOW 1S72W 5HL7W 3CPWV 3CCJW 3CMEW 3I55W 1VQ8W 1VQPW 1VQ5W 1Q82X 3CCEW 1K8AX 1VQMW 3CCRW 1Q81X 3CMAW 3CCQW 3CCVW 4WCEW 2OTJW 1KD1X 2QA4W 3CCUW 1VQLW 1N8RX 2ZJPW 2QEXW 1JJ2V 1YITW 4IOCW 5GADa 1YI2W
chains in the Genus database with same CATH superfamily
1BXYA 3GQ0A 3W7XA 4IOAW 1CTFA 1VQ6W 2ZJQW 1K73X 3ZG5A 5DM7W 5JVGW 5GAGa 1YI2W 3CXCV 1MBXC 4YKAA 3G6EW 3O1FA 3GW1A 3D3IA 1RQUA 3CCMW 1DD3A 1QVGV 1W2BV 4U67W 3W7SA 3I56W 1YJWW 1VQKW 1YJNW 1M1KX 3CC4W 4IO9W 3PIPW 5CA3A 1KC8X 1MWTA 1MBUC 1MWSA 2ZJRW 1VQ7W 1YJ9W 3DLLW 1MG9A 3J7ZZ 5GAEa 1NJIX 1VQ9W 3CCLW 1VQQA 1K9MX 1MBVB 1KQSV 4WFAW 1R6OC 1VQNW 3CD6W 3CC7W 1VQOW 2W9RA 3G4SW 2WA9A 4WF9W 4CJNA 4WFNW 4WFBW 1M90X 1VQ4W 3O1FB 4YJMA 3ZFZA 1QVFV 3CF5W 5DM6W 5M18A 5GW7A 3OW2V 1Q7YX 3CC2W 3O2BA 5JVHW 1Q86X 1YIJW 2WA8A 2OTLW 4DKIA 3CCSW 3G71W 4UY8Z 1LZWA 5GAHa 1YHQW 5M1AA 3PIOW 1S72W 5HL7W 3CPWV 3CCJW 3CMEW 1RQVA 1R6QC 3G19A 3I55W 1VQ8W 1VQPW 1VQ5W 1Q82X 3CCEW 3DNJA 3W7WA 1DD4A 1K8AX 1VQMW 3G3PA 3W7UA 1MWUA 1RQSA 4CPKA 3CCRW 1Q81X 3O2HA 3CMAW 3CCQW 3CCVW 4WCEW 1MWRA 2OTJW 5M19A 1KD1X 2QA4W 3G1BA 4BL2A 3CCUW 1VQLW 1N8RX 2ZJPW 2QEXW 3O2OA 1JJ2V 4BL3A 1YITW 4IOCW 3ZG0A 3W7TA 5GADa 3GQ1A 4YJXA
chains in the Genus database with same CATH topology
1BXYA 4IOAW 1VQ6W 2ZJQW 1K73X 5DM7W 5JVGW 5GAGa 3CXCV 3G6EW 3CCMW 1QVGV 1W2BV 4U67W 3I56W 1YJWW 1VQKW 1YJNW 1M1KX 3CC4W 4IO9W 3PIPW 1KC8X 2ZJRW 1VQ7W 1YJ9W 3DLLW 3J7ZZ 5GAEa 1NJIX 1VQ9W 3CCLW 1K9MX 1KQSV 4WFAW 1VQNW 3CD6W 3CC7W 1VQOW 3G4SW 4WF9W 4WFNW 4WFBW 1M90X 1VQ4W 1QVFV 3CF5W 5DM6W 3OW2V 1Q7YX 3CC2W 5JVHW 1Q86X 1YIJW 2OTLW 3CCSW 3G71W 4UY8Z 5GAHa 1YHQW 3PIOW 1S72W 5HL7W 3CPWV 3CCJW 3CMEW 3I55W 1VQ8W 1VQPW 1VQ5W 1Q82X 3CCEW 1K8AX 1VQMW 3CCRW 1Q81X 3CMAW 3CCQW 3CCVW 4WCEW 2OTJW 1KD1X 2QA4W 3CCUW 1VQLW 1N8RX 2ZJPW 2QEXW 1JJ2V 1YITW 4IOCW 5GADa 1YI2W
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BXY A;  4IOA W;  1VQ6 W;  2ZJQ W;  1K73 X;  5DM7 W;  5JVG W;  5GAG a;  3CXC V;  3G6E W;  3CCM W;  1QVG V;  1W2B V;  4U67 W;  3I56 W;  1YJW W;  1VQK W;  1YJN W;  1M1K X;  3CC4 W;  4IO9 W;  3PIP W;  1KC8 X;  2ZJR W;  1VQ7 W;  1YJ9 W;  3DLL W;  3J7Z Z;  5GAE a;  1NJI X;  1VQ9 W;  3CCL W;  1K9M X;  1KQS V;  4WFA W;  1VQN W;  3CD6 W;  3CC7 W;  1VQO W;  3G4S W;  4WF9 W;  4WFN W;  4WFB W;  1M90 X;  1VQ4 W;  1QVF V;  3CF5 W;  5DM6 W;  3OW2 V;  1Q7Y X;  3CC2 W;  5JVH W;  1Q86 X;  1YIJ W;  2OTL W;  3CCS W;  3G71 W;  4UY8 Z;  5GAH a;  1YHQ W;  3PIO W;  1S72 W;  5HL7 W;  3CPW V;  3CCJ W;  3CME W;  3I55 W;  1VQ8 W;  1VQP W;  1VQ5 W;  1Q82 X;  3CCE W;  1K8A X;  1VQM W;  3CCR W;  1Q81 X;  3CMA W;  3CCQ W;  3CCV W;  4WCE W;  2OTJ W;  1KD1 X;  2QA4 W;  3CCU W;  1VQL W;  1N8R X;  2ZJP W;  2QEX W;  1JJ2 V;  1YIT W;  4IOC W;  5GAD a;  1YI2 W; 
#chains in the Genus database with same CATH topology
 1BXY A;  3GQ0 A;  3W7X A;  4IOA W;  1CTF A;  1VQ6 W;  2ZJQ W;  1K73 X;  3ZG5 A;  5DM7 W;  5JVG W;  5GAG a;  1YI2 W;  3CXC V;  1MBX C;  4YKA A;  3G6E W;  3O1F A;  3GW1 A;  3D3I A;  1RQU A;  3CCM W;  1DD3 A;  1QVG V;  1W2B V;  4U67 W;  3W7S A;  3I56 W;  1YJW W;  1VQK W;  1YJN W;  1M1K X;  3CC4 W;  4IO9 W;  3PIP W;  5CA3 A;  1KC8 X;  1MWT A;  1MBU C;  1MWS A;  2ZJR W;  1VQ7 W;  1YJ9 W;  3DLL W;  1MG9 A;  3J7Z Z;  5GAE a;  1NJI X;  1VQ9 W;  3CCL W;  1VQQ A;  1K9M X;  1MBV B;  1KQS V;  4WFA W;  1R6O C;  1VQN W;  3CD6 W;  3CC7 W;  1VQO W;  2W9R A;  3G4S W;  2WA9 A;  4WF9 W;  4CJN A;  4WFN W;  4WFB W;  1M90 X;  1VQ4 W;  3O1F B;  4YJM A;  3ZFZ A;  1QVF V;  3CF5 W;  5DM6 W;  5M18 A;  5GW7 A;  3OW2 V;  1Q7Y X;  3CC2 W;  3O2B A;  5JVH W;  1Q86 X;  1YIJ W;  2WA8 A;  2OTL W;  4DKI A;  3CCS W;  3G71 W;  4UY8 Z;  1LZW A;  5GAH a;  1YHQ W;  5M1A A;  3PIO W;  1S72 W;  5HL7 W;  3CPW V;  3CCJ W;  3CME W;  1RQV A;  1R6Q C;  3G19 A;  3I55 W;  1VQ8 W;  1VQP W;  1VQ5 W;  1Q82 X;  3CCE W;  3DNJ A;  3W7W A;  1DD4 A;  1K8A X;  1VQM W;  3G3P A;  3W7U A;  1MWU A;  1RQS A;  4CPK A;  3CCR W;  1Q81 X;  3O2H A;  3CMA W;  3CCQ W;  3CCV W;  4WCE W;  1MWR A;  2OTJ W;  5M19 A;  1KD1 X;  2QA4 W;  3G1B A;  4BL2 A;  3CCU W;  1VQL W;  1N8R X;  2ZJP W;  2QEX W;  3O2O A;  1JJ2 V;  4BL3 A;  1YIT W;  4IOC W;  3ZG0 A;  3W7T A;  5GAD a;  3GQ1 A;  4YJX A; 
#chains in the Genus database with same CATH homology
 1BXY A;  4IOA W;  1VQ6 W;  2ZJQ W;  1K73 X;  5DM7 W;  5JVG W;  5GAG a;  3CXC V;  3G6E W;  3CCM W;  1QVG V;  1W2B V;  4U67 W;  3I56 W;  1YJW W;  1VQK W;  1YJN W;  1M1K X;  3CC4 W;  4IO9 W;  3PIP W;  1KC8 X;  2ZJR W;  1VQ7 W;  1YJ9 W;  3DLL W;  3J7Z Z;  5GAE a;  1NJI X;  1VQ9 W;  3CCL W;  1K9M X;  1KQS V;  4WFA W;  1VQN W;  3CD6 W;  3CC7 W;  1VQO W;  3G4S W;  4WF9 W;  4WFN W;  4WFB W;  1M90 X;  1VQ4 W;  1QVF V;  3CF5 W;  5DM6 W;  3OW2 V;  1Q7Y X;  3CC2 W;  5JVH W;  1Q86 X;  1YIJ W;  2OTL W;  3CCS W;  3G71 W;  4UY8 Z;  5GAH a;  1YHQ W;  3PIO W;  1S72 W;  5HL7 W;  3CPW V;  3CCJ W;  3CME W;  3I55 W;  1VQ8 W;  1VQP W;  1VQ5 W;  1Q82 X;  3CCE W;  1K8A X;  1VQM W;  3CCR W;  1Q81 X;  3CMA W;  3CCQ W;  3CCV W;  4WCE W;  2OTJ W;  1KD1 X;  2QA4 W;  3CCU W;  1VQL W;  1N8R X;  2ZJP W;  2QEX W;  1JJ2 V;  1YIT W;  4IOC W;  5GAD a;  1YI2 W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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