4IOAW

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
55
structure length
55
Chain Sequence
MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
total genus 13
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 4ioaW00
1BXYA 3PIOW 4IOAW 3OW2V 5HL7W 3CCQW 3G6EW 1Q82X 1QVFV 3CCVW 4UY8Z 1Q81X 1VQLW 5GAEa 5JVGW 1KD1X 1Q7YX 1M1KX 4WFAW 1YHQW 3J7ZZ 1VQ9W 3CC2W 3G71W 1M90X 2ZJQW 2QEXW 1S72W 3CC7W 1K9MX 1YJ9W 1VQKW 1VQNW 3CF5W 2OTLW 3CCMW 1YJWW 3CPWV 1NJIX 1VQ5W 3I55W 3CCLW 1Q86X 3CMAW 3DLLW 3CCSW 2ZJPW 4WFBW 3CCRW 1JJ2V 1W2BV 4WFNW 3I56W 4IO9W 1VQ8W 5DM6W 5JVHW 5GADa 1YI2W 1VQ7W 1VQ6W 2OTJW 5GAGa 1YIJW 1VQOW 4WF9W 1YITW 5GAHa 3CMEW 3CCUW 4WCEW 1KC8X 3CCJW 4U67W 1VQPW 1VQ4W 3CXCV 4IOCW 3G4SW 1KQSV 5DM7W 1QVGV 1K73X 3CCEW 1N8RX 2ZJRW 3CD6W 3CC4W 1YJNW 3PIPW 2QA4W 1VQMW 1K8AX
chains in the Genus database with same CATH superfamily
1BXYA 3PIOW 4IOAW 3OW2V 5HL7W 1RQVA 3CCQW 2WA8A 3G3PA 3G6EW 1Q82X 1QVFV 3W7XA 3CCVW 4UY8Z 3W7UA 1Q81X 1VQLW 5M19A 3G1BA 3GQ1A 5GAEa 5JVGW 1MBXC 1KD1X 1Q7YX 1M1KX 2WA9A 1RQSA 1LZWA 3G19A 4WFAW 1YHQW 1MG9A 3J7ZZ 3O2OA 4BL2A 1VQ9W 3CC2W 3G71W 1M90X 3D3IA 2ZJQW 2QEXW 1S72W 4YJXA 3CC7W 1K9MX 1R6QC 1YJ9W 1VQKW 1VQNW 3CF5W 2OTLW 3CCMW 4YKAA 3CPWV 1YJWW 1NJIX 1VQ5W 3DNJA 1MBVB 3I55W 3CCLW 1MWTA 1Q86X 3CMAW 3O2BA 3DLLW 4BL3A 3W7SA 3CCSW 2ZJPW 4WFBW 3CCRW 1VQQA 4CJNA 1JJ2V 3W7TA 1W2BV 3W7WA 4WFNW 3I56W 3O2HA 4IO9W 3ZFZA 1VQ8W 5DM6W 5JVHW 5GADa 1YI2W 1VQ7W 1MWUA 1MWSA 1VQ6W 2OTJW 5GAGa 1YIJW 1VQOW 4WF9W 1YITW 5GAHa 3ZG5A 3CMEW 1MBUC 5CA3A 3CCUW 3GQ0A 4WCEW 4YJMA 3CCJW 1KC8X 4CPKA 1R6OC 4U67W 1VQPW 3O1FA 1VQ4W 3CXCV 4IOCW 3G4SW 1KQSV 4DKIA 5M18A 5DM7W 5GW7A 3ZG0A 1QVGV 1K73X 5M1AA 3CCEW 1N8RX 1DD3A 2ZJRW 1DD4A 3CC4W 3CD6W 1YJNW 3PIPW 3O1FB 1CTFA 3GW1A 2QA4W 1VQMW 1RQUA 1MWRA 2W9RA 1K8AX
chains in the Genus database with same CATH topology
1BXYA 3PIOW 4IOAW 3OW2V 5HL7W 3CCQW 3G6EW 1Q82X 1QVFV 3CCVW 4UY8Z 1Q81X 1VQLW 5GAEa 5JVGW 1KD1X 1Q7YX 1M1KX 4WFAW 1YHQW 3J7ZZ 1VQ9W 3CC2W 3G71W 1M90X 2ZJQW 2QEXW 1S72W 3CC7W 1K9MX 1YJ9W 1VQKW 1VQNW 3CF5W 2OTLW 3CCMW 1YJWW 3CPWV 1NJIX 1VQ5W 3I55W 3CCLW 1Q86X 3CMAW 3DLLW 3CCSW 2ZJPW 4WFBW 3CCRW 1JJ2V 1W2BV 4WFNW 3I56W 4IO9W 1VQ8W 5DM6W 5JVHW 5GADa 1YI2W 1VQ7W 1VQ6W 2OTJW 5GAGa 1YIJW 1VQOW 4WF9W 1YITW 5GAHa 3CMEW 3CCUW 4WCEW 1KC8X 3CCJW 4U67W 1VQPW 1VQ4W 3CXCV 4IOCW 3G4SW 1KQSV 5DM7W 1QVGV 1K73X 3CCEW 1N8RX 2ZJRW 3CD6W 3CC4W 1YJNW 3PIPW 2QA4W 1VQMW 1K8AX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BXY A;  3PIO W;  4IOA W;  3OW2 V;  5HL7 W;  3CCQ W;  3G6E W;  1Q82 X;  1QVF V;  3CCV W;  4UY8 Z;  1Q81 X;  1VQL W;  5GAE a;  5JVG W;  1KD1 X;  1Q7Y X;  1M1K X;  4WFA W;  1YHQ W;  3J7Z Z;  1VQ9 W;  3CC2 W;  3G71 W;  1M90 X;  2ZJQ W;  2QEX W;  1S72 W;  3CC7 W;  1K9M X;  1YJ9 W;  1VQK W;  1VQN W;  3CF5 W;  2OTL W;  3CCM W;  1YJW W;  3CPW V;  1NJI X;  1VQ5 W;  3I55 W;  3CCL W;  1Q86 X;  3CMA W;  3DLL W;  3CCS W;  2ZJP W;  4WFB W;  3CCR W;  1JJ2 V;  1W2B V;  4WFN W;  3I56 W;  4IO9 W;  1VQ8 W;  5DM6 W;  5JVH W;  5GAD a;  1YI2 W;  1VQ7 W;  1VQ6 W;  2OTJ W;  5GAG a;  1YIJ W;  1VQO W;  4WF9 W;  1YIT W;  5GAH a;  3CME W;  3CCU W;  4WCE W;  1KC8 X;  3CCJ W;  4U67 W;  1VQP W;  1VQ4 W;  3CXC V;  4IOC W;  3G4S W;  1KQS V;  5DM7 W;  1QVG V;  1K73 X;  3CCE W;  1N8R X;  2ZJR W;  3CD6 W;  3CC4 W;  1YJN W;  3PIP W;  2QA4 W;  1VQM W;  1K8A X; 
#chains in the Genus database with same CATH topology
 1BXY A;  3PIO W;  4IOA W;  3OW2 V;  5HL7 W;  1RQV A;  3CCQ W;  2WA8 A;  3G3P A;  3G6E W;  1Q82 X;  1QVF V;  3W7X A;  3CCV W;  4UY8 Z;  3W7U A;  1Q81 X;  1VQL W;  5M19 A;  3G1B A;  3GQ1 A;  5GAE a;  5JVG W;  1MBX C;  1KD1 X;  1Q7Y X;  1M1K X;  2WA9 A;  1RQS A;  1LZW A;  3G19 A;  4WFA W;  1YHQ W;  1MG9 A;  3J7Z Z;  3O2O A;  4BL2 A;  1VQ9 W;  3CC2 W;  3G71 W;  1M90 X;  3D3I A;  2ZJQ W;  2QEX W;  1S72 W;  4YJX A;  3CC7 W;  1K9M X;  1R6Q C;  1YJ9 W;  1VQK W;  1VQN W;  3CF5 W;  2OTL W;  3CCM W;  4YKA A;  3CPW V;  1YJW W;  1NJI X;  1VQ5 W;  3DNJ A;  1MBV B;  3I55 W;  3CCL W;  1MWT A;  1Q86 X;  3CMA W;  3O2B A;  3DLL W;  4BL3 A;  3W7S A;  3CCS W;  2ZJP W;  4WFB W;  3CCR W;  1VQQ A;  4CJN A;  1JJ2 V;  3W7T A;  1W2B V;  3W7W A;  4WFN W;  3I56 W;  3O2H A;  4IO9 W;  3ZFZ A;  1VQ8 W;  5DM6 W;  5JVH W;  5GAD a;  1YI2 W;  1VQ7 W;  1MWU A;  1MWS A;  1VQ6 W;  2OTJ W;  5GAG a;  1YIJ W;  1VQO W;  4WF9 W;  1YIT W;  5GAH a;  3ZG5 A;  3CME W;  1MBU C;  5CA3 A;  3CCU W;  3GQ0 A;  4WCE W;  4YJM A;  3CCJ W;  1KC8 X;  4CPK A;  1R6O C;  4U67 W;  1VQP W;  3O1F A;  1VQ4 W;  3CXC V;  4IOC W;  3G4S W;  1KQS V;  4DKI A;  5M18 A;  5DM7 W;  5GW7 A;  3ZG0 A;  1QVG V;  1K73 X;  5M1A A;  3CCE W;  1N8R X;  1DD3 A;  2ZJR W;  1DD4 A;  3CC4 W;  3CD6 W;  1YJN W;  3PIP W;  3O1F B;  1CTF A;  3GW1 A;  2QA4 W;  1VQM W;  1RQU A;  1MWR A;  2W9R A;  1K8A X; 
#chains in the Genus database with same CATH homology
 1BXY A;  3PIO W;  4IOA W;  3OW2 V;  5HL7 W;  3CCQ W;  3G6E W;  1Q82 X;  1QVF V;  3CCV W;  4UY8 Z;  1Q81 X;  1VQL W;  5GAE a;  5JVG W;  1KD1 X;  1Q7Y X;  1M1K X;  4WFA W;  1YHQ W;  3J7Z Z;  1VQ9 W;  3CC2 W;  3G71 W;  1M90 X;  2ZJQ W;  2QEX W;  1S72 W;  3CC7 W;  1K9M X;  1YJ9 W;  1VQK W;  1VQN W;  3CF5 W;  2OTL W;  3CCM W;  1YJW W;  3CPW V;  1NJI X;  1VQ5 W;  3I55 W;  3CCL W;  1Q86 X;  3CMA W;  3DLL W;  3CCS W;  2ZJP W;  4WFB W;  3CCR W;  1JJ2 V;  1W2B V;  4WFN W;  3I56 W;  4IO9 W;  1VQ8 W;  5DM6 W;  5JVH W;  5GAD a;  1YI2 W;  1VQ7 W;  1VQ6 W;  2OTJ W;  5GAG a;  1YIJ W;  1VQO W;  4WF9 W;  1YIT W;  5GAH a;  3CME W;  3CCU W;  4WCE W;  1KC8 X;  3CCJ W;  4U67 W;  1VQP W;  1VQ4 W;  3CXC V;  4IOC W;  3G4S W;  1KQS V;  5DM7 W;  1QVG V;  1K73 X;  3CCE W;  1N8R X;  2ZJR W;  3CD6 W;  3CC4 W;  1YJN W;  3PIP W;  2QA4 W;  1VQM W;  1K8A X; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...