4IQIA

Crystal structure of 7-cyano-7-deazaguanine reductase, quef from vibrio cholerae o1 biovar el tor complexed with cytosine
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
259
structure length
259
Chain Sequence
NQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NADPH-dependent 7-cyano-7-deazaguanine reductase
publication title Crystal Structure of 7-cyano-7-deazaguanine Reductase, QueF from Vibrio cholerae O1 biovar El Tor complexed with cytosine
rcsb
source organism Vibrio cholerae o1 biovar el tor
total genus 86
structure length 259
sequence length 259
chains with identical sequence B
ec nomenclature ec 1.7.1.13: PreQ(1) synthase.
pdb deposition date 2013-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14489 QueF QueF-like protein
A PF14819 QueF_N Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 4iqiA02
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 4iqiA01
1RRYA 1Z9WA 1WM9A 1A9CA 5F3MA 3O1KA 1RS4A 4GHMA 4UQFA 1IS8A 3S19A 1WUQA 3R2EA 1FB1A 2CG8A 1U68A 1RS2A 1N3TA 2DHNA 3UXVA 1WPLA 1NBUC 3BP1A 1WURA 1DHNA 5FARA 1SQLA 3V9OA 1N3RA 1NBUB 4F8BA 1GTPA 1NBUA 1IS7A 1B9LA 1A8RA 2NM2A 2O90A 1RRIA 2NM3A 1FBXA 1RSIA 1RSDA 3RJ4A 4DU6A 1RRWA 4AEYA 3UXJA 4IQIA 4FGCA 1N3SA 3RZPA
chains in the Genus database with same CATH superfamily
1RRYA 1Z9WA 1WM9A 1A9CA 5F3MA 3O1KA 1RS4A 4GHMA 4UQFA 1IS8A 3S19A 1WUQA 3R2EA 1FB1A 2CG8A 1U68A 1RS2A 1N3TA 2DHNA 3UXVA 1WPLA 1NBUC 3BP1A 1WURA 1DHNA 5FARA 1SQLA 3V9OA 1N3RA 1NBUB 4F8BA 1GTPA 1NBUA 1IS7A 1B9LA 1A8RA 2NM2A 2O90A 1RRIA 2NM3A 1FBXA 1RSIA 1RSDA 3RJ4A 4DU6A 1RRWA 4AEYA 3UXJA 4IQIA 4FGCA 1N3SA 3RZPA
chains in the Genus database with same CATH topology
1RRYA 1Z9WA 1WM9A 1A9CA 5F3MA 3O1KA 1RS4A 4GHMA 4UQFA 1IS8A 3S19A 1WUQA 3R2EA 1FB1A 2CG8A 1U68A 1RS2A 1N3TA 2DHNA 3UXVA 1WPLA 1NBUC 3BP1A 1WURA 1DHNA 5FARA 1SQLA 3V9OA 1N3RA 1NBUB 4F8BA 1GTPA 1NBUA 1IS7A 1B9LA 1A8RA 2NM2A 2O90A 1RRIA 2NM3A 1FBXA 1RSIA 1RSDA 3RJ4A 4DU6A 1RRWA 4AEYA 3UXJA 4IQIA 4FGCA 1N3SA 3RZPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RRY A;  1Z9W A;  1WM9 A;  1A9C A;  5F3M A;  3O1K A;  1RS4 A;  4GHM A;  4UQF A;  1IS8 A;  3S19 A;  1WUQ A;  3R2E A;  1FB1 A;  2CG8 A;  1U68 A;  1RS2 A;  1N3T A;  2DHN A;  3UXV A;  1WPL A;  1NBU C;  3BP1 A;  1WUR A;  1DHN A;  5FAR A;  1SQL A;  3V9O A;  1N3R A;  1NBU B;  4F8B A;  1GTP A;  1NBU A;  1IS7 A;  1B9L A;  1A8R A;  2NM2 A;  2O90 A;  1RRI A;  2NM3 A;  1FBX A;  1RSI A;  1RSD A;  3RJ4 A;  4DU6 A;  1RRW A;  4AEY A;  3UXJ A;  4IQI A;  4FGC A;  1N3S A;  3RZP A; 
#chains in the Genus database with same CATH topology
 1RRY A;  1Z9W A;  1WM9 A;  1A9C A;  5F3M A;  3O1K A;  1RS4 A;  4GHM A;  4UQF A;  1IS8 A;  3S19 A;  1WUQ A;  3R2E A;  1FB1 A;  2CG8 A;  1U68 A;  1RS2 A;  1N3T A;  2DHN A;  3UXV A;  1WPL A;  1NBU C;  3BP1 A;  1WUR A;  1DHN A;  5FAR A;  1SQL A;  3V9O A;  1N3R A;  1NBU B;  4F8B A;  1GTP A;  1NBU A;  1IS7 A;  1B9L A;  1A8R A;  2NM2 A;  2O90 A;  1RRI A;  2NM3 A;  1FBX A;  1RSI A;  1RSD A;  3RJ4 A;  4DU6 A;  1RRW A;  4AEY A;  3UXJ A;  4IQI A;  4FGC A;  1N3S A;  3RZP A; 
#chains in the Genus database with same CATH homology
 1RRY A;  1Z9W A;  1WM9 A;  1A9C A;  5F3M A;  3O1K A;  1RS4 A;  4GHM A;  4UQF A;  1IS8 A;  3S19 A;  1WUQ A;  3R2E A;  1FB1 A;  2CG8 A;  1U68 A;  1RS2 A;  1N3T A;  2DHN A;  3UXV A;  1WPL A;  1NBU C;  3BP1 A;  1WUR A;  1DHN A;  5FAR A;  1SQL A;  3V9O A;  1N3R A;  1NBU B;  4F8B A;  1GTP A;  1NBU A;  1IS7 A;  1B9L A;  1A8R A;  2NM2 A;  2O90 A;  1RRI A;  2NM3 A;  1FBX A;  1RSI A;  1RSD A;  3RJ4 A;  4DU6 A;  1RRW A;  4AEY A;  3UXJ A;  4IQI A;  4FGC A;  1N3S A;  3RZP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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