4ITRA

Crystal structure of ibpafic2-h3717a in complex with adenylylated cdc42
Total Genus 116
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
299
structure length
299
Chain Sequence
VNYQDLEDNLNLKGLISLEDDRNANFESNVLKNEKFLDEAREISKKSIPEATVKQMSHLPEFDDILTEGAKKVESRINKAITFRPSVEEFSEIQDLVKTLPKTKVIEDLSTKTNEITEALAATSKTIQRTPELKEQLKTAIEDFLQNSQGKPLTVQMIENLNHGLRPDEGEGRLLYKKENLTKENAVFSSPEAAKIQLAETVDFINRAKNEGIEPSVVGALVYQRLIAYAPFAEGNGRMARVIVNKILLDAGYPAFTKFSDEFEPQIIPQTKASTKSATSSEVVVEFLKELAKKGSKED
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis of Fic-mediated adenylylation.
pubmed doi rcsb
source organism Haemophilus somnus
molecule tags Transferase
molecule keywords Adenosine monophosphate-protein transferase and cysteine pro
total genus 116
structure length 299
sequence length 299
chains with identical sequence B
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2013-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 4itrA00
4PY3A 4N67A 2JK8A 2G03A 4X2CA 3SE5A 4X2DA 5JJ7A 3S6AA 4U0SA 4ITRA 3SN9A 3ZLMA 4X2EA 5CKLA 2VY3A 5CMTA 5JJ6A 4U0UA 3ZC7A 3SHGA 3CUCA 3N3UA 4LU4A 4M16A 4NPSA 5CGLA 5JFZA 4U04A 3ZCBA 4U07A 4XI8A 4WGJA 5EU0A 3LETA 2VZAA 2F6SA 5JFFA 4U0ZA
chains in the Genus database with same CATH superfamily
4PY3A 4N67A 2JK8A 2G03A 4X2CA 3SE5A 4X2DA 5JJ7A 3S6AA 1NH1A 4U0SA 4ITRA 3SN9A 3ZLMA 4X2EA 5CKLA 2VY3A 5CMTA 5JJ6A 4U0UA 3ZC7A 3SHGA 3CUCA 3N3UA 4LU4A 4M16A 4NPSA 5CGLA 5JFZA 4U04A 3ZCBA 2NUDA 4U07A 4XI8A 2NUNA 4WGJA 5EU0A 3LETA 2F6SA 2VZAA 5JFFA 4U0ZA
chains in the Genus database with same CATH topology
4PY3A 4N67A 2JK8A 2G03A 4X2CA 3SE5A 4X2DA 5JJ7A 3S6AA 4U0SA 4ITRA 3SN9A 3ZLMA 4X2EA 5CKLA 2VY3A 5CMTA 5JJ6A 4U0UA 3ZC7A 3SHGA 3CUCA 3N3UA 4LU4A 4M16A 4NPSA 5CGLA 5JFZA 4U04A 3ZCBA 4U07A 4XI8A 4WGJA 5EU0A 3LETA 2VZAA 2F6SA 5JFFA 4U0ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PY3 A;  4N67 A;  2JK8 A;  2G03 A;  4X2C A;  3SE5 A;  4X2D A;  5JJ7 A;  3S6A A;  4U0S A;  4ITR A;  3SN9 A;  3ZLM A;  4X2E A;  5CKL A;  2VY3 A;  5CMT A;  5JJ6 A;  4U0U A;  3ZC7 A;  3SHG A;  3CUC A;  3N3U A;  4LU4 A;  4M16 A;  4NPS A;  5CGL A;  5JFZ A;  4U04 A;  3ZCB A;  4U07 A;  4XI8 A;  4WGJ A;  5EU0 A;  3LET A;  2VZA A;  2F6S A;  5JFF A;  4U0Z A; 
#chains in the Genus database with same CATH topology
 4PY3 A;  4N67 A;  2JK8 A;  2G03 A;  4X2C A;  3SE5 A;  4X2D A;  5JJ7 A;  3S6A A;  1NH1 A;  4U0S A;  4ITR A;  3SN9 A;  3ZLM A;  4X2E A;  5CKL A;  2VY3 A;  5CMT A;  5JJ6 A;  4U0U A;  3ZC7 A;  3SHG A;  3CUC A;  3N3U A;  4LU4 A;  4M16 A;  4NPS A;  5CGL A;  5JFZ A;  4U04 A;  3ZCB A;  2NUD A;  4U07 A;  4XI8 A;  2NUN A;  4WGJ A;  5EU0 A;  3LET A;  2F6S A;  2VZA A;  5JFF A;  4U0Z A; 
#chains in the Genus database with same CATH homology
 4PY3 A;  4N67 A;  2JK8 A;  2G03 A;  4X2C A;  3SE5 A;  4X2D A;  5JJ7 A;  3S6A A;  4U0S A;  4ITR A;  3SN9 A;  3ZLM A;  4X2E A;  5CKL A;  2VY3 A;  5CMT A;  5JJ6 A;  4U0U A;  3ZC7 A;  3SHG A;  3CUC A;  3N3U A;  4LU4 A;  4M16 A;  4NPS A;  5CGL A;  5JFZ A;  4U04 A;  3ZCB A;  4U07 A;  4XI8 A;  4WGJ A;  5EU0 A;  3LET A;  2VZA A;  2F6S A;  5JFF A;  4U0Z A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...