4IU9A

Crystal structure of a membrane transporter
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
443
structure length
396
Chain Sequence
LLRDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIALWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVILGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and mechanism of a nitrate transporter.
pubmed doi rcsb
molecule keywords Nitrite extrusion protein 2
molecule tags Transport protein
source organism Escherichia coli
total genus 123
structure length 396
sequence length 443
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07690 MFS_1 Major Facilitator Superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4iu9A00
1PV7A 4QIQA 4PYPA 4TPGA 4U4TA 4XNJA 4XNIA 4JREA 5D59A 1PW4A 4GBZA 4U4VA 5D58A 5EQHA 5EQGA 4GC0A 4IKYA 4J05A 4Q65A 3WDOA 4IKWA 4D2CA 4D2DA 5A2NA 4ZW9A 4GBYA 4D2BA 4YBQA 4APSA 4IKZA 4U4WA 5C65A 4IKVA 4OAAA 4TPJA 2CFQA 4JA3A 4OH3A 2CFPA 3O7PA 4ZWBA 4YB9D 4IU9A 2XUTA 2Y5YA 4ZYRA 3O7QA 4UVMA 4LDSA 5A2OA 4IKXA 4LEPA 4IU8A 1PV6A 5EQIA 4TPHA 5D6KA 4ZWCA 2V8NA 4JR9A 5GXBA 4W6VA
chains in the Genus database with same CATH superfamily
1CD9A 1PY2A 3FKID 5EQGA 3UF5A 1EXZA 4ZW9A 2B8XA 1ITFA 1HULA 5IP9D 1RFBA 2CFPA 2L3YA 3EJJA 4YB9D 4NEJA 2ILKA 2PSMA 3DUHC 1FG9A 3G6DA 1IK0A 4JR9A 4DKCA 4NEMA 5GXBA 5C3ED 3LB6A 1HGUA 4NN6A 4Q65A 5D71A 3D85C 3D87A 5A2NA 3NPZA 1BGEA 3O7PA 1V7MV 4YPGC 4ZYRA 1IARA 4PS4A 1AU1A 5EQIA 3PIVA 2ERJD 3VA2A 1ALUA 1PV7A 2B5IA 4QIQA 4Z5RD 4IKYA 3HHCA 4IKWA 4D2DA 3BESL 3I4ND 3AYHA 3OG4A 1HWHA 4BY7D 2CFQA 4WRLB 2XUTA 1CNT1 3OG6A 4I77Z 2JA6D 1F45B 3BPNA 4BXXD 3QB1A 4XNJA 1HZIA 1ITIA 2JA5D 3BPOA 3INKC 5C7XA 1WCMD 1BBNA 1ITMA 1Y6NL 4A3BD 5C65A 4IU9A 2IL6A 3LB6B 2O26A 4NN5A 5A2OA 1RCBA 1BCNA 3HMXB 4A3LD 2O6IA 1HIJA 1PW4A 4GBZA 1CSGA 4DKDA 2LMSA 4GC0A 4EXPA 3HOUD 4A3DD 4DKFA 2L3OA 2B90A 2INTA 1Y6ML 4BBRD 1IJZA 4NN7A 1PW6A 3PO3D 2R92D 2JA8D 1ITLA 3HOVD 4BY1D 1A7MA 1WU3I 4U4TA 4JREA 1EVSA 5EQHA 4GRWA 1ILKA 4BBSD 1HIKA 2CYKA 1B5LA 1LKIA 1D9GA 1SCFA 2C35A 4X51A 3DI2A 4A3ED 4ZWCA 1IRLA 4PYPA 4XNIA 1NBPA 1PVHB 4J05A 3WDOA 3UX9A 3Q1SI 4D2BA 4A3FD 4YBQA 4NKQC 5D28B 2Q7NB 2H24A 3DLQI 3HHRA 3NCBA 3QT2C 1PGRA 5IYCD 3DGCL 1AXIA 4YQXA 2Z3RA 5D6KA 2Z3QA 4W6VA 2KZ1A 1YKBA 3DI3A 3H3VE 5C44D 5FLMD 1M48A 2B8YA 1M4CA 4IKVA 5KNHI 1Z7CA 1Y1VD 5D22A 4UVMA 1GNCA 4LEPA 2E9WC 1RW5A 3NCFA 1P9MB 4DOHA 4GBYA 2OQPA 4NI9A 5D72A 1Y6KL 2JA7D 1AX8A 1EKUA 3NCCA 3G9VB 4YDYI 3UF2A 3SE3B 4TPHA 2V8NA 3H0GD 4CNIC 2B91A 2B63D 3UEZE 1Y1WD 1EMRA 4FA8E 1V7NV 1ETEA 4TPJA 4ZWBA 1FYHA 3BPLA 2Y5YA 4ZS7A 1I1RB 4A3KD 4RS1A 1LK3A 4A93D 2D48A 4YUEC 3QB7A 4IKZA 2R93D 5D70A 4OH3A 1VLKA 4O6KA 3HOXD 3D48P 4A3ID 1QVNA 1J7VL 1M47A 5C4XD 2LAGA 3HOZD 4TPGA 4U4VA 1Z92A 3EW3A 2HYMB 5L6YC 5LQBA 3N06A 2D9QA 4U4WA 2O27A 1M4AA 2VUMD 3OQ3A 4IKXA 1CN4C 2B8UA 5IYDD 1D9CA 2B8ZA 5D59A 1BGDA 1M4BA 4A3JD 5E4EA 4ZF7A 1HUWA 4D2CA 3PIWA 5FHXA 4NI7A 4A3CD 3IRHA 1CYLA 3NCEA 4EXNA 2Q98A 3O7QA 3HOWD 3L5XA 4LDSA 1PV6A 3QAZA 5TS9A 1Y14A 1GA3A 1IL6A 3N0PA 5IP7D 3HOYD 1JLIA 1KF9A 1A22A 4GS7A 2GMFA 1BGCA 2R7ZD 3MZGA 4OAAA 3L5WI 4A3GD 4MHLA 1HWGA 3S9DA 4LRLA 4IU8A 1LQSL 1BUYA 4J4LC 1RHGA 5D58A 1N1FA 3QWRB 5FUCA 1F6FA 5IYBD 3TGXB 4DKEA 1M49A 3WCYI 2XQBA 4A3MD 1INRA 2Q14A 1EERA 3I4MD 1BP3A 4O9HA 3PO2D 3B5KA 4APSA 1M4RA 4JA3A 3SE4B
chains in the Genus database with same CATH topology
1PV7A 4QIQA 4PYPA 4TPGA 4U4TA 4XNJA 4XNIA 4JREA 5D59A 1PW4A 4GBZA 4U4VA 5D58A 5EQHA 5EQGA 4GC0A 4IKYA 4J05A 4Q65A 3WDOA 4IKWA 4D2CA 4D2DA 5A2NA 4ZW9A 4GBYA 4D2BA 4YBQA 4APSA 4IKZA 4U4WA 5C65A 4IKVA 4OAAA 4TPJA 2CFQA 4JA3A 4OH3A 2CFPA 3O7PA 4ZWBA 4YB9D 4IU9A 2XUTA 2Y5YA 4ZYRA 3O7QA 4UVMA 4LDSA 5A2OA 4IKXA 4LEPA 4IU8A 1PV6A 5EQIA 4TPHA 5D6KA 4ZWCA 2V8NA 4JR9A 5GXBA 4W6VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PV7 A;  4QIQ A;  4PYP A;  4TPG A;  4U4T A;  4XNJ A;  4XNI A;  4JRE A;  5D59 A;  1PW4 A;  4GBZ A;  4U4V A;  5D58 A;  5EQH A;  5EQG A;  4GC0 A;  4IKY A;  4J05 A;  4Q65 A;  3WDO A;  4IKW A;  4D2C A;  4D2D A;  5A2N A;  4ZW9 A;  4GBY A;  4D2B A;  4YBQ A;  4APS A;  4IKZ A;  4U4W A;  5C65 A;  4IKV A;  4OAA A;  4TPJ A;  2CFQ A;  4JA3 A;  4OH3 A;  2CFP A;  3O7P A;  4ZWB A;  4YB9 D;  4IU9 A;  2XUT A;  2Y5Y A;  4ZYR A;  3O7Q A;  4UVM A;  4LDS A;  5A2O A;  4IKX A;  4LEP A;  4IU8 A;  1PV6 A;  5EQI A;  4TPH A;  5D6K A;  4ZWC A;  2V8N A;  4JR9 A;  5GXB A;  4W6V A; 
#chains in the Genus database with same CATH topology
 1CD9 A;  1PY2 A;  3FKI D;  5EQG A;  3UF5 A;  1EXZ A;  4ZW9 A;  2B8X A;  1ITF A;  1HUL A;  5IP9 D;  1RFB A;  2CFP A;  2L3Y A;  3EJJ A;  4YB9 D;  4NEJ A;  2ILK A;  2PSM A;  3DUH C;  1FG9 A;  3G6D A;  1IK0 A;  4JR9 A;  4DKC A;  4NEM A;  5GXB A;  5C3E D;  3LB6 A;  1HGU A;  4NN6 A;  4Q65 A;  5D71 A;  3D85 C;  3D87 A;  5A2N A;  3NPZ A;  1BGE A;  3O7P A;  1V7M V;  4YPG C;  4ZYR A;  1IAR A;  4PS4 A;  1AU1 A;  5EQI A;  3PIV A;  2ERJ D;  3VA2 A;  1ALU A;  1PV7 A;  2B5I A;  4QIQ A;  4Z5R D;  4IKY A;  3HHC A;  4IKW A;  4D2D A;  3BES L;  3I4N D;  3AYH A;  3OG4 A;  1HWH A;  4BY7 D;  2CFQ A;  4WRL B;  2XUT A;  1CNT 1;  3OG6 A;  4I77 Z;  2JA6 D;  1F45 B;  3BPN A;  4BXX D;  3QB1 A;  4XNJ A;  1HZI A;  1ITI A;  2JA5 D;  3BPO A;  3INK C;  5C7X A;  1WCM D;  1BBN A;  1ITM A;  1Y6N L;  4A3B D;  5C65 A;  4IU9 A;  2IL6 A;  3LB6 B;  2O26 A;  4NN5 A;  5A2O A;  1RCB A;  1BCN A;  3HMX B;  4A3L D;  2O6I A;  1HIJ A;  1PW4 A;  4GBZ A;  1CSG A;  4DKD A;  2LMS A;  4GC0 A;  4EXP A;  3HOU D;  4A3D D;  4DKF A;  2L3O A;  2B90 A;  2INT A;  1Y6M L;  4BBR D;  1IJZ A;  4NN7 A;  1PW6 A;  3PO3 D;  2R92 D;  2JA8 D;  1ITL A;  3HOV D;  4BY1 D;  1A7M A;  1WU3 I;  4U4T A;  4JRE A;  1EVS A;  5EQH A;  4GRW A;  1ILK A;  4BBS D;  1HIK A;  2CYK A;  1B5L A;  1LKI A;  1D9G A;  1SCF A;  2C35 A;  4X51 A;  3DI2 A;  4A3E D;  4ZWC A;  1IRL A;  4PYP A;  4XNI A;  1NBP A;  1PVH B;  4J05 A;  3WDO A;  3UX9 A;  3Q1S I;  4D2B A;  4A3F D;  4YBQ A;  4NKQ C;  5D28 B;  2Q7N B;  2H24 A;  3DLQ I;  3HHR A;  3NCB A;  3QT2 C;  1PGR A;  5IYC D;  3DGC L;  1AXI A;  4YQX A;  2Z3R A;  5D6K A;  2Z3Q A;  4W6V A;  2KZ1 A;  1YKB A;  3DI3 A;  3H3V E;  5C44 D;  5FLM D;  1M48 A;  2B8Y A;  1M4C A;  4IKV A;  5KNH I;  1Z7C A;  1Y1V D;  5D22 A;  4UVM A;  1GNC A;  4LEP A;  2E9W C;  1RW5 A;  3NCF A;  1P9M B;  4DOH A;  4GBY A;  2OQP A;  4NI9 A;  5D72 A;  1Y6K L;  2JA7 D;  1AX8 A;  1EKU A;  3NCC A;  3G9V B;  4YDY I;  3UF2 A;  3SE3 B;  4TPH A;  2V8N A;  3H0G D;  4CNI C;  2B91 A;  2B63 D;  3UEZ E;  1Y1W D;  1EMR A;  4FA8 E;  1V7N V;  1ETE A;  4TPJ A;  4ZWB A;  1FYH A;  3BPL A;  2Y5Y A;  4ZS7 A;  1I1R B;  4A3K D;  4RS1 A;  1LK3 A;  4A93 D;  2D48 A;  4YUE C;  3QB7 A;  4IKZ A;  2R93 D;  5D70 A;  4OH3 A;  1VLK A;  4O6K A;  3HOX D;  3D48 P;  4A3I D;  1QVN A;  1J7V L;  1M47 A;  5C4X D;  2LAG A;  3HOZ D;  4TPG A;  4U4V A;  1Z92 A;  3EW3 A;  2HYM B;  5L6Y C;  5LQB A;  3N06 A;  2D9Q A;  4U4W A;  2O27 A;  1M4A A;  2VUM D;  3OQ3 A;  4IKX A;  1CN4 C;  2B8U A;  5IYD D;  1D9C A;  2B8Z A;  5D59 A;  1BGD A;  1M4B A;  4A3J D;  5E4E A;  4ZF7 A;  1HUW A;  4D2C A;  3PIW A;  5FHX A;  4NI7 A;  4A3C D;  3IRH A;  1CYL A;  3NCE A;  4EXN A;  2Q98 A;  3O7Q A;  3HOW D;  3L5X A;  4LDS A;  1PV6 A;  3QAZ A;  5TS9 A;  1Y14 A;  1GA3 A;  1IL6 A;  3N0P A;  5IP7 D;  3HOY D;  1JLI A;  1KF9 A;  1A22 A;  4GS7 A;  2GMF A;  1BGC A;  2R7Z D;  3MZG A;  4OAA A;  3L5W I;  4A3G D;  4MHL A;  1HWG A;  3S9D A;  4LRL A;  4IU8 A;  1LQS L;  1BUY A;  4J4L C;  1RHG A;  5D58 A;  1N1F A;  3QWR B;  5FUC A;  1F6F A;  5IYB D;  3TGX B;  4DKE A;  1M49 A;  3WCY I;  2XQB A;  4A3M D;  1INR A;  2Q14 A;  1EER A;  3I4M D;  1BP3 A;  4O9H A;  3PO2 D;  3B5K A;  4APS A;  1M4R A;  4JA3 A;  3SE4 B; 
#chains in the Genus database with same CATH homology
 1PV7 A;  4QIQ A;  4PYP A;  4TPG A;  4U4T A;  4XNJ A;  4XNI A;  4JRE A;  5D59 A;  1PW4 A;  4GBZ A;  4U4V A;  5D58 A;  5EQH A;  5EQG A;  4GC0 A;  4IKY A;  4J05 A;  4Q65 A;  3WDO A;  4IKW A;  4D2C A;  4D2D A;  5A2N A;  4ZW9 A;  4GBY A;  4D2B A;  4YBQ A;  4APS A;  4IKZ A;  4U4W A;  5C65 A;  4IKV A;  4OAA A;  4TPJ A;  2CFQ A;  4JA3 A;  4OH3 A;  2CFP A;  3O7P A;  4ZWB A;  4YB9 D;  4IU9 A;  2XUT A;  2Y5Y A;  4ZYR A;  3O7Q A;  4UVM A;  4LDS A;  5A2O A;  4IKX A;  4LEP A;  4IU8 A;  1PV6 A;  5EQI A;  4TPH A;  5D6K A;  4ZWC A;  2V8N A;  4JR9 A;  5GXB A;  4W6V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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