4IYEA

Crystal structure of adtx1 (rho-da1a) from eastern green mamba (dendroaspis angusticeps)
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
66
structure length
66
Chain Sequence
GLTCVTSKSIFGITTEDCPDGQNLCFKRRHYVVPAIYDSTRGCAATCPIPENYDSIHCCKTDKCNE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Toxin AdTx1
publication title Crystallization of recombinant green mamba rho-Da1a toxin during a lyophilization procedure and its structure determination.
pubmed doi rcsb
source organism Dendroaspis angusticeps
total genus 11
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2013-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 4iyeA00
1I02A 2UWRA 3EBXA 2H62D 3NEQA 1QKEA 2CRSA 1JE9A 2MHYA 1ZADA 1CDSA 1KTZB 1FASA 1FSCA 1IQ9A 1H0JA 1FFJA 3KFDI 4FAOC 1IDIA 5IMTD 4QTIU 2UX2A 2L5SA 3ERAA 1CREA 3U73U 1ERGA 1TGXA 2X8BB 4EY8B 1JGKA 1KS6A 2N99A 2BHIA 4OM4A 1KL8A 1NORA 1CTXA 2GOOB 1UG4A 1CB9A 1HAAA 1CCQA 1W6BA 1NXBA 4BIKB 1KBSA 1KBAA 1QM7A 4BDTB 3EVSC 1RGJA 1HC9B 2HLQA 3NH7A 4OM5A 1LXHA 2JQPA 1LSIA 1NTNA 3VTSA 1FF4A 1V6PA 1HOYA 1MAHF 1FSSB 1IKCA 5DU1A 1FRAA 2L03A 2CTXA 2FD6U 2MJYA 1PLOA 2H5FA 2QJ9C 4RUDA 4XJJA 1CXOA 2ABXA 4LFTA 1DRSA 5EBXA 1RL5A 1S4YA 3BT2U 2H64B 1BXPA 1B41B 1CDTA 1NTXA 2MJ4A 1F8UB 1NEAA 2H64C 1IDGA 1CHVS 3PLCA 3QB4B 2PJYC 2VLWA 1CRFA 1F94A 2MUPA 3U74U 6EBXA 4P7UA 2H8UA 3NDSA 2LA1A 1ABTA 1VB0A 2H7ZA 1KBTA 1TXBA 3BT1U 2NBTA 1ERAA 1NYSA 5DZ5A 2QC1A 5DO6A 1KXIA 1IK8A 2I9BE 1JBDA 2J8BA 2K3GA 3LAQU 4AEAA 1COEA 1CVOA 1HAJA 1M9ZA 3HH7A 2ERAA 1MR6A 4UY2C 1CDQA 1BTEA 1L4WA 2MFAA 1KC4A 2MJ0A 1IJCA 1ES7B 1NYUA 2JVEA 2LCRA 1ONJA 1HC9A 1XT3A 4DO8A 1KFHA 1LJZA 2PJYB 1YWHA 4FAOE 2OFSA 2QJAC 1CDRA 1QKDA 5IMYC 2BTXA 2CCXA 2CDXA 3FEVA 4HQPF 1KU6B 3KFDE 2QJBC 1LXGA 1REWC 2H7ZB 1LX5B 1TFSA 1TXAA 1IDLA 1CXNA 1G6MA 4IYEA 1IDHA 2HLRA 2MUOA 2H62C 2GOOC 4ZQYA 2CRTA 1CODA
chains in the Genus database with same CATH superfamily
1I02A 2UWRA 3EBXA 2H62D 3NEQA 1QKEA 2CRSA 1JE9A 2MHYA 1ZADA 1CDSA 1KTZB 1FASA 1FSCA 1IQ9A 1H0JA 1FFJA 3KFDI 4FAOC 1IDIA 5IMTD 4QTIU 2UX2A 2L5SA 3ERAA 1CREA 3U73U 1ERGA 1TGXA 2X8BB 4EY8B 1JGKA 1KS6A 2N99A 2BHIA 4OM4A 1KL8A 1NORA 1CTXA 2GOOB 1UG4A 1CB9A 1HAAA 1CCQA 1W6BA 1NXBA 4BIKB 1KBSA 1KBAA 1QM7A 4BDTB 3EVSC 1RGJA 1HC9B 2HLQA 3NH7A 4OM5A 1LXHA 2JQPA 1LSIA 1NTNA 3VTSA 1FF4A 1V6PA 1HOYA 1MAHF 1FSSB 1IKCA 5DU1A 1FRAA 2L03A 2CTXA 2FD6U 2MJYA 1PLOA 2H5FA 2QJ9C 4RUDA 4XJJA 1CXOA 2ABXA 4LFTA 1DRSA 5EBXA 1RL5A 1S4YA 3BT2U 2H64B 1BXPA 1B41B 1CDTA 1NTXA 2MJ4A 1F8UB 1NEAA 2H64C 1IDGA 1CHVS 3PLCA 3QB4B 2PJYC 2VLWA 1CRFA 1F94A 2MUPA 3U74U 6EBXA 4P7UA 2H8UA 3NDSA 2LA1A 1ABTA 1VB0A 2H7ZA 1KBTA 1TXBA 3BT1U 2NBTA 1ERAA 1NYSA 5DZ5A 2QC1A 5DO6A 1KXIA 1IK8A 2I9BE 1JBDA 2J8BA 2K3GA 3LAQU 4AEAA 1COEA 1CVOA 1HAJA 1M9ZA 3HH7A 2ERAA 1MR6A 4UY2C 1CDQA 1BTEA 1L4WA 2MFAA 1KC4A 4KSNA 2MJ0A 1IJCA 1ES7B 1NYUA 2JVEA 2LCRA 1ONJA 1HC9A 1XT3A 4DO8A 1KFHA 1LJZA 2PJYB 1YWHA 4FAOE 2OFSA 2QJAC 1CDRA 1QKDA 5IMYC 2BTXA 2CCXA 2CDXA 3FEVA 4HQPF 1KU6B 3KFDE 2QJBC 1LXGA 1REWC 2H7ZB 1LX5B 1TFSA 1TXAA 1IDLA 1CXNA 1G6MA 4IYEA 1IDHA 2HLRA 2MUOA 2H62C 2GOOC 4ZQYA 2CRTA 1CODA
chains in the Genus database with same CATH topology
1I02A 2UWRA 3EBXA 2H62D 3NEQA 1QKEA 2CRSA 1JE9A 2MHYA 1ZADA 1CDSA 1KTZB 1FASA 1FSCA 1IQ9A 1H0JA 1FFJA 3KFDI 4FAOC 1IDIA 5IMTD 4QTIU 2UX2A 2L5SA 3ERAA 1CREA 3U73U 1ERGA 1TGXA 2X8BB 4EY8B 1JGKA 1KS6A 2N99A 2BHIA 4OM4A 1KL8A 1NORA 1CTXA 2GOOB 1UG4A 1CB9A 1HAAA 1CCQA 1W6BA 1NXBA 4BIKB 1KBSA 1KBAA 1QM7A 4BDTB 3EVSC 1RGJA 1HC9B 2HLQA 3NH7A 4OM5A 1LXHA 2JQPA 1LSIA 1NTNA 3VTSA 1FF4A 1V6PA 1HOYA 1MAHF 1FSSB 1IKCA 5DU1A 1FRAA 2L03A 2CTXA 2FD6U 2MJYA 1PLOA 2H5FA 2QJ9C 4RUDA 4XJJA 1CXOA 2ABXA 4LFTA 1DRSA 5EBXA 1RL5A 1S4YA 3BT2U 2H64B 1BXPA 1B41B 1CDTA 1NTXA 2MJ4A 1F8UB 1NEAA 2H64C 1IDGA 1CHVS 3PLCA 3QB4B 2PJYC 2VLWA 1CRFA 1F94A 2MUPA 3U74U 6EBXA 4P7UA 2H8UA 3NDSA 2LA1A 1ABTA 1VB0A 2H7ZA 1KBTA 1TXBA 3BT1U 2NBTA 1ERAA 1NYSA 5DZ5A 2QC1A 5DO6A 1KXIA 1IK8A 2I9BE 1JBDA 2J8BA 2K3GA 3LAQU 4AEAA 1COEA 1CVOA 1HAJA 1M9ZA 3HH7A 2ERAA 1MR6A 4UY2C 1CDQA 1BTEA 1L4WA 2MFAA 1KC4A 4KSNA 2MJ0A 1IJCA 1ES7B 1NYUA 2JVEA 2LCRA 1ONJA 1HC9A 1XT3A 4DO8A 1KFHA 1LJZA 2PJYB 1YWHA 4FAOE 2OFSA 2QJAC 1CDRA 1QKDA 5IMYC 2BTXA 2CCXA 2CDXA 3FEVA 4HQPF 1KU6B 3KFDE 2QJBC 1LXGA 1REWC 2H7ZB 1LX5B 1TFSA 1TXAA 1IDLA 1CXNA 1G6MA 4IYEA 1IDHA 2HLRA 2MUOA 2H62C 2GOOC 4ZQYA 2CRTA 1CODA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I02 A;  2UWR A;  3EBX A;  2H62 D;  3NEQ A;  1QKE A;  2CRS A;  1JE9 A;  2MHY A;  1ZAD A;  1CDS A;  1KTZ B;  1FAS A;  1FSC A;  1IQ9 A;  1H0J A;  1FFJ A;  3KFD I;  4FAO C;  1IDI A;  5IMT D;  4QTI U;  2UX2 A;  2L5S A;  3ERA A;  1CRE A;  3U73 U;  1ERG A;  1TGX A;  2X8B B;  4EY8 B;  1JGK A;  1KS6 A;  2N99 A;  2BHI A;  4OM4 A;  1KL8 A;  1NOR A;  1CTX A;  2GOO B;  1UG4 A;  1CB9 A;  1HAA A;  1CCQ A;  1W6B A;  1NXB A;  4BIK B;  1KBS A;  1KBA A;  1QM7 A;  4BDT B;  3EVS C;  1RGJ A;  1HC9 B;  2HLQ A;  3NH7 A;  4OM5 A;  1LXH A;  2JQP A;  1LSI A;  1NTN A;  3VTS A;  1FF4 A;  1V6P A;  1HOY A;  1MAH F;  1FSS B;  1IKC A;  5DU1 A;  1FRA A;  2L03 A;  2CTX A;  2FD6 U;  2MJY A;  1PLO A;  2H5F A;  2QJ9 C;  4RUD A;  4XJJ A;  1CXO A;  2ABX A;  4LFT A;  1DRS A;  5EBX A;  1RL5 A;  1S4Y A;  3BT2 U;  2H64 B;  1BXP A;  1B41 B;  1CDT A;  1NTX A;  2MJ4 A;  1F8U B;  1NEA A;  2H64 C;  1IDG A;  1CHV S;  3PLC A;  3QB4 B;  2PJY C;  2VLW A;  1CRF A;  1F94 A;  2MUP A;  3U74 U;  6EBX A;  4P7U A;  2H8U A;  3NDS A;  2LA1 A;  1ABT A;  1VB0 A;  2H7Z A;  1KBT A;  1TXB A;  3BT1 U;  2NBT A;  1ERA A;  1NYS A;  5DZ5 A;  2QC1 A;  5DO6 A;  1KXI A;  1IK8 A;  2I9B E;  1JBD A;  2J8B A;  2K3G A;  3LAQ U;  4AEA A;  1COE A;  1CVO A;  1HAJ A;  1M9Z A;  3HH7 A;  2ERA A;  1MR6 A;  4UY2 C;  1CDQ A;  1BTE A;  1L4W A;  2MFA A;  1KC4 A;  2MJ0 A;  1IJC A;  1ES7 B;  1NYU A;  2JVE A;  2LCR A;  1ONJ A;  1HC9 A;  1XT3 A;  4DO8 A;  1KFH A;  1LJZ A;  2PJY B;  1YWH A;  4FAO E;  2OFS A;  2QJA C;  1CDR A;  1QKD A;  5IMY C;  2BTX A;  2CCX A;  2CDX A;  3FEV A;  4HQP F;  1KU6 B;  3KFD E;  2QJB C;  1LXG A;  1REW C;  2H7Z B;  1LX5 B;  1TFS A;  1TXA A;  1IDL A;  1CXN A;  1G6M A;  4IYE A;  1IDH A;  2HLR A;  2MUO A;  2H62 C;  2GOO C;  4ZQY A;  2CRT A;  1COD A; 
#chains in the Genus database with same CATH topology
 1I02 A;  2UWR A;  3EBX A;  2H62 D;  3NEQ A;  1QKE A;  2CRS A;  1JE9 A;  2MHY A;  1ZAD A;  1CDS A;  1KTZ B;  1FAS A;  1FSC A;  1IQ9 A;  1H0J A;  1FFJ A;  3KFD I;  4FAO C;  1IDI A;  5IMT D;  4QTI U;  2UX2 A;  2L5S A;  3ERA A;  1CRE A;  3U73 U;  1ERG A;  1TGX A;  2X8B B;  4EY8 B;  1JGK A;  1KS6 A;  2N99 A;  2BHI A;  4OM4 A;  1KL8 A;  1NOR A;  1CTX A;  2GOO B;  1UG4 A;  1CB9 A;  1HAA A;  1CCQ A;  1W6B A;  1NXB A;  4BIK B;  1KBS A;  1KBA A;  1QM7 A;  4BDT B;  3EVS C;  1RGJ A;  1HC9 B;  2HLQ A;  3NH7 A;  4OM5 A;  1LXH A;  2JQP A;  1LSI A;  1NTN A;  3VTS A;  1FF4 A;  1V6P A;  1HOY A;  1MAH F;  1FSS B;  1IKC A;  5DU1 A;  1FRA A;  2L03 A;  2CTX A;  2FD6 U;  2MJY A;  1PLO A;  2H5F A;  2QJ9 C;  4RUD A;  4XJJ A;  1CXO A;  2ABX A;  4LFT A;  1DRS A;  5EBX A;  1RL5 A;  1S4Y A;  3BT2 U;  2H64 B;  1BXP A;  1B41 B;  1CDT A;  1NTX A;  2MJ4 A;  1F8U B;  1NEA A;  2H64 C;  1IDG A;  1CHV S;  3PLC A;  3QB4 B;  2PJY C;  2VLW A;  1CRF A;  1F94 A;  2MUP A;  3U74 U;  6EBX A;  4P7U A;  2H8U A;  3NDS A;  2LA1 A;  1ABT A;  1VB0 A;  2H7Z A;  1KBT A;  1TXB A;  3BT1 U;  2NBT A;  1ERA A;  1NYS A;  5DZ5 A;  2QC1 A;  5DO6 A;  1KXI A;  1IK8 A;  2I9B E;  1JBD A;  2J8B A;  2K3G A;  3LAQ U;  4AEA A;  1COE A;  1CVO A;  1HAJ A;  1M9Z A;  3HH7 A;  2ERA A;  1MR6 A;  4UY2 C;  1CDQ A;  1BTE A;  1L4W A;  2MFA A;  1KC4 A;  4KSN A;  2MJ0 A;  1IJC A;  1ES7 B;  1NYU A;  2JVE A;  2LCR A;  1ONJ A;  1HC9 A;  1XT3 A;  4DO8 A;  1KFH A;  1LJZ A;  2PJY B;  1YWH A;  4FAO E;  2OFS A;  2QJA C;  1CDR A;  1QKD A;  5IMY C;  2BTX A;  2CCX A;  2CDX A;  3FEV A;  4HQP F;  1KU6 B;  3KFD E;  2QJB C;  1LXG A;  1REW C;  2H7Z B;  1LX5 B;  1TFS A;  1TXA A;  1IDL A;  1CXN A;  1G6M A;  4IYE A;  1IDH A;  2HLR A;  2MUO A;  2H62 C;  2GOO C;  4ZQY A;  2CRT A;  1COD A; 
#chains in the Genus database with same CATH homology
 1I02 A;  2UWR A;  3EBX A;  2H62 D;  3NEQ A;  1QKE A;  2CRS A;  1JE9 A;  2MHY A;  1ZAD A;  1CDS A;  1KTZ B;  1FAS A;  1FSC A;  1IQ9 A;  1H0J A;  1FFJ A;  3KFD I;  4FAO C;  1IDI A;  5IMT D;  4QTI U;  2UX2 A;  2L5S A;  3ERA A;  1CRE A;  3U73 U;  1ERG A;  1TGX A;  2X8B B;  4EY8 B;  1JGK A;  1KS6 A;  2N99 A;  2BHI A;  4OM4 A;  1KL8 A;  1NOR A;  1CTX A;  2GOO B;  1UG4 A;  1CB9 A;  1HAA A;  1CCQ A;  1W6B A;  1NXB A;  4BIK B;  1KBS A;  1KBA A;  1QM7 A;  4BDT B;  3EVS C;  1RGJ A;  1HC9 B;  2HLQ A;  3NH7 A;  4OM5 A;  1LXH A;  2JQP A;  1LSI A;  1NTN A;  3VTS A;  1FF4 A;  1V6P A;  1HOY A;  1MAH F;  1FSS B;  1IKC A;  5DU1 A;  1FRA A;  2L03 A;  2CTX A;  2FD6 U;  2MJY A;  1PLO A;  2H5F A;  2QJ9 C;  4RUD A;  4XJJ A;  1CXO A;  2ABX A;  4LFT A;  1DRS A;  5EBX A;  1RL5 A;  1S4Y A;  3BT2 U;  2H64 B;  1BXP A;  1B41 B;  1CDT A;  1NTX A;  2MJ4 A;  1F8U B;  1NEA A;  2H64 C;  1IDG A;  1CHV S;  3PLC A;  3QB4 B;  2PJY C;  2VLW A;  1CRF A;  1F94 A;  2MUP A;  3U74 U;  6EBX A;  4P7U A;  2H8U A;  3NDS A;  2LA1 A;  1ABT A;  1VB0 A;  2H7Z A;  1KBT A;  1TXB A;  3BT1 U;  2NBT A;  1ERA A;  1NYS A;  5DZ5 A;  2QC1 A;  5DO6 A;  1KXI A;  1IK8 A;  2I9B E;  1JBD A;  2J8B A;  2K3G A;  3LAQ U;  4AEA A;  1COE A;  1CVO A;  1HAJ A;  1M9Z A;  3HH7 A;  2ERA A;  1MR6 A;  4UY2 C;  1CDQ A;  1BTE A;  1L4W A;  2MFA A;  1KC4 A;  4KSN A;  2MJ0 A;  1IJC A;  1ES7 B;  1NYU A;  2JVE A;  2LCR A;  1ONJ A;  1HC9 A;  1XT3 A;  4DO8 A;  1KFH A;  1LJZ A;  2PJY B;  1YWH A;  4FAO E;  2OFS A;  2QJA C;  1CDR A;  1QKD A;  5IMY C;  2BTX A;  2CCX A;  2CDX A;  3FEV A;  4HQP F;  1KU6 B;  3KFD E;  2QJB C;  1LXG A;  1REW C;  2H7Z B;  1LX5 B;  1TFS A;  1TXA A;  1IDL A;  1CXN A;  1G6M A;  4IYE A;  1IDH A;  2HLR A;  2MUO A;  2H62 C;  2GOO C;  4ZQY A;  2CRT A;  1COD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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