4IZVA

The e41q/c145a double mutant of the amidase from nesterenkonia sp. an1 in complex with acrylamide
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
271
structure length
262
Chain Sequence
GLVPRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPQLFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVAYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPDADYLQDRRAELHRNWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/substrate
molecule keywords Amidase
publication title Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
rcsb
source organism Nesterenkonia sp. 10004
total genus 78
structure length 262
sequence length 271
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2013-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 4izvA00
5H8KA 4LF0A 4HGDA 2E11A 4IZTA 4H5UA 1J31A 1EMSA 2PLQA 3DLAA 3IVZA 4GYNA 4IZUA 5JQNA 4CYGA 3SEQA 2GGKA 2UXYA 1F89A 2GGLA 4HG5A 3WUYA 5H8IA 2VHHA 1UF7A 3KI8A 4HG3A 4IZWA 2W1VA 4IZVA 3P8KA 4CYFA 2E2KA 4CYYA 3SYTA 4GYLA 4IZSA 5H8JA 3HKXA 4KZFA 1FO6A 4F4HA 5H8LA 1UF8A 1UF4A 3IW3A 2DYVA 3SDBA 2E2LA 2VHIA 3SZGA 1ERZA 3N05A 1UF5A 3KLCA 3SEZA 2DYUA 5KHAA 3ILVA
chains in the Genus database with same CATH superfamily
5H8KA 4LF0A 4HGDA 2E11A 4IZTA 4H5UA 1J31A 1EMSA 2PLQA 3DLAA 3IVZA 4GYNA 4IZUA 5JQNA 4CYGA 3SEQA 2GGKA 2UXYA 1F89A 2GGLA 4HG5A 3WUYA 5H8IA 2VHHA 1UF7A 3KI8A 4HG3A 4IZWA 2W1VA 4IZVA 3P8KA 4CYFA 2E2KA 4CYYA 3SYTA 4GYLA 4IZSA 5H8JA 3HKXA 4KZFA 1FO6A 4F4HA 5H8LA 1UF8A 1UF4A 3IW3A 2DYVA 3SDBA 2E2LA 2VHIA 3SZGA 1ERZA 3N05A 1UF5A 3KLCA 3SEZA 2DYUA 5KHAA 3ILVA
chains in the Genus database with same CATH topology
5H8KA 4LF0A 4HGDA 2E11A 4IZTA 4H5UA 1J31A 1EMSA 2PLQA 3DLAA 3IVZA 4GYNA 4IZUA 5JQNA 4CYGA 3SEQA 2GGKA 2UXYA 1F89A 2GGLA 4HG5A 3WUYA 5H8IA 2VHHA 1UF7A 3KI8A 4HG3A 4IZWA 2W1VA 4IZVA 3P8KA 4CYFA 2E2KA 4CYYA 3SYTA 4GYLA 4IZSA 5H8JA 3HKXA 4KZFA 1FO6A 4F4HA 5H8LA 1UF8A 1UF4A 3IW3A 2DYVA 3SDBA 2E2LA 2VHIA 3SZGA 1ERZA 3N05A 1UF5A 3KLCA 3SEZA 2DYUA 5KHAA 3ILVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H8K A;  4LF0 A;  4HGD A;  2E11 A;  4IZT A;  4H5U A;  1J31 A;  1EMS A;  2PLQ A;  3DLA A;  3IVZ A;  4GYN A;  4IZU A;  5JQN A;  4CYG A;  3SEQ A;  2GGK A;  2UXY A;  1F89 A;  2GGL A;  4HG5 A;  3WUY A;  5H8I A;  2VHH A;  1UF7 A;  3KI8 A;  4HG3 A;  4IZW A;  2W1V A;  4IZV A;  3P8K A;  4CYF A;  2E2K A;  4CYY A;  3SYT A;  4GYL A;  4IZS A;  5H8J A;  3HKX A;  4KZF A;  1FO6 A;  4F4H A;  5H8L A;  1UF8 A;  1UF4 A;  3IW3 A;  2DYV A;  3SDB A;  2E2L A;  2VHI A;  3SZG A;  1ERZ A;  3N05 A;  1UF5 A;  3KLC A;  3SEZ A;  2DYU A;  5KHA A;  3ILV A; 
#chains in the Genus database with same CATH topology
 5H8K A;  4LF0 A;  4HGD A;  2E11 A;  4IZT A;  4H5U A;  1J31 A;  1EMS A;  2PLQ A;  3DLA A;  3IVZ A;  4GYN A;  4IZU A;  5JQN A;  4CYG A;  3SEQ A;  2GGK A;  2UXY A;  1F89 A;  2GGL A;  4HG5 A;  3WUY A;  5H8I A;  2VHH A;  1UF7 A;  3KI8 A;  4HG3 A;  4IZW A;  2W1V A;  4IZV A;  3P8K A;  4CYF A;  2E2K A;  4CYY A;  3SYT A;  4GYL A;  4IZS A;  5H8J A;  3HKX A;  4KZF A;  1FO6 A;  4F4H A;  5H8L A;  1UF8 A;  1UF4 A;  3IW3 A;  2DYV A;  3SDB A;  2E2L A;  2VHI A;  3SZG A;  1ERZ A;  3N05 A;  1UF5 A;  3KLC A;  3SEZ A;  2DYU A;  5KHA A;  3ILV A; 
#chains in the Genus database with same CATH homology
 5H8K A;  4LF0 A;  4HGD A;  2E11 A;  4IZT A;  4H5U A;  1J31 A;  1EMS A;  2PLQ A;  3DLA A;  3IVZ A;  4GYN A;  4IZU A;  5JQN A;  4CYG A;  3SEQ A;  2GGK A;  2UXY A;  1F89 A;  2GGL A;  4HG5 A;  3WUY A;  5H8I A;  2VHH A;  1UF7 A;  3KI8 A;  4HG3 A;  4IZW A;  2W1V A;  4IZV A;  3P8K A;  4CYF A;  2E2K A;  4CYY A;  3SYT A;  4GYL A;  4IZS A;  5H8J A;  3HKX A;  4KZF A;  1FO6 A;  4F4H A;  5H8L A;  1UF8 A;  1UF4 A;  3IW3 A;  2DYV A;  3SDB A;  2E2L A;  2VHI A;  3SZG A;  1ERZ A;  3N05 A;  1UF5 A;  3KLC A;  3SEZ A;  2DYU A;  5KHA A;  3ILV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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