4J2GA

Atg13 horma domain
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
256
structure length
202
Chain Sequence
SLDKQLWELIDNFFLKAALLICHSKKLERELKPWTTFDGSESLPPLVIETYLDLARLSPSQQVTLKDQDGNPWNVCKGTKKSEIMLERWLIQMDVSELYRQLVLLFRYLETLVGLLPASELQARLIRPPVKLGTRILDGSKPIVSKGRIGLSKSLIATYSNVINETNLPAHLEQRKITPIRTKFGSLRISVSYRKDCDFHVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords KLTH0A00704p
publication title A HORMA domain in Atg13 mediates PI 3-kinase recruitment in autophagy.
pubmed doi rcsb
source organism Lachancea thermotolerans
total genus 50
structure length 202
sequence length 256
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10033 ATG13 Autophagy-related protein 13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.900.10 Alpha Beta 2-Layer Sandwich Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A HORMA domain 4j2gA00
3ABDA 4TZQA 4EXTC 5LCWZ 4TZJA 4GK0A 1DUJA 1KLQA 4YK8B 4TZNA 5C50B 2V64A 3GMHA 2V64D 1GO4A 3ABEC 2VFXA 4J2GA 4TZMA 4AEZB 4FJOC 4TRKA 4TZSA 3VU7C 1S2HA 4TZLA 4TZOA 2QYFA 4GK5A
chains in the Genus database with same CATH superfamily
3ABDA 4TZQA 4EXTC 5LCWZ 4TZJA 4GK0A 1DUJA 1KLQA 4YK8B 4TZNA 5C50B 2V64A 3GMHA 2V64D 1GO4A 3ABEC 2VFXA 4J2GA 4TZMA 4AEZB 4FJOC 4TRKA 4TZSA 3VU7C 1S2HA 4TZLA 4TZOA 2QYFA 4GK5A 2QYFB
chains in the Genus database with same CATH topology
3ABDA 4TZQA 4EXTC 5LCWZ 4TZJA 4GK0A 1DUJA 1KLQA 4YK8B 4TZNA 5C50B 2V64A 3GMHA 2V64D 1GO4A 3ABEC 2VFXA 4J2GA 4TZMA 4AEZB 4FJOC 4TRKA 4TZSA 3VU7C 1S2HA 4TZLA 4TZOA 2QYFA 4GK5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ABD A;  4TZQ A;  4EXT C;  5LCW Z;  4TZJ A;  4GK0 A;  1DUJ A;  1KLQ A;  4YK8 B;  4TZN A;  5C50 B;  2V64 A;  3GMH A;  2V64 D;  1GO4 A;  3ABE C;  2VFX A;  4J2G A;  4TZM A;  4AEZ B;  4FJO C;  4TRK A;  4TZS A;  3VU7 C;  1S2H A;  4TZL A;  4TZO A;  2QYF A;  4GK5 A; 
#chains in the Genus database with same CATH topology
 3ABD A;  4TZQ A;  4EXT C;  5LCW Z;  4TZJ A;  4GK0 A;  1DUJ A;  1KLQ A;  4YK8 B;  4TZN A;  5C50 B;  2V64 A;  3GMH A;  2V64 D;  1GO4 A;  3ABE C;  2VFX A;  4J2G A;  4TZM A;  4AEZ B;  4FJO C;  4TRK A;  4TZS A;  3VU7 C;  1S2H A;  4TZL A;  4TZO A;  2QYF A;  4GK5 A;  2QYF B; 
#chains in the Genus database with same CATH homology
 3ABD A;  4TZQ A;  4EXT C;  5LCW Z;  4TZJ A;  4GK0 A;  1DUJ A;  1KLQ A;  4YK8 B;  4TZN A;  5C50 B;  2V64 A;  3GMH A;  2V64 D;  1GO4 A;  3ABE C;  2VFX A;  4J2G A;  4TZM A;  4AEZ B;  4FJO C;  4TRK A;  4TZS A;  3VU7 C;  1S2H A;  4TZL A;  4TZO A;  2QYF A;  4GK5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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