4J3DA

Pseudomonas aeruginosa lpxc in complex with a hydroxamate inhibitor
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
297
structure length
287
Chain Sequence
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFCRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISYM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Exploring the UDP pocket of LpxC through amino acid analogs.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Hydrolase/hydrolase inhibitor
total genus 84
structure length 287
sequence length 297
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2013-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 4j3dA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 4j3dA02
4LCGA 2J65A 4MDTA 3PS2A 1P42A 3NZKA 4FW3A 4LCFA 2JT2A 3UHMA 2O3ZA 4IS9A 4U3BA 3P76A 4J3DA 4OKGA 2IESA 4LCHA 1YH8A 1YHCA 3PS1A 3PS3A 5DRQA 5DROA 2GO3A 3P3GA 4FW5A 3U1YA 3P3EA 1XXEA 4FW7A 4FW6A 5DRPA 3P3CA 4ISAA 4U3DA 2GO4A 2IERA 4FW4A 5DRRA 2VESA 4MQYA 4OZEA
chains in the Genus database with same CATH superfamily
2BA1G 3F0NA 5K36D 4LF6I 4URLA 2VF3A 5A2QC 3UHMA 5C0XB 1Y5YA 4JI5E 2Z5BB 4JI6I 3B82A 4DUYE 5EL9A 2CGEA 2UXDE 4LF5I 3PS3A 5IT9C 1ZM2A 4NXME 4AIMA 1XMQE 4USMA 1IBLI 2E1RA 3B8HA 1Z59A 2V2VA 5K36B 2X36A 4QNKA 4JV5I 3LPSA 4JI3I 4LFBI 4FN5A 5DNLA 1XNRI 3NZKA 4JI4I 4LF7E 3CDIA 4IFDD 1HNXI 1Z5BA 4J3DA 5L3JA 4B3TE 4LF4E 3M7NG 1BKNA 4LCHA 1YHCA 4DV4I 1H72C 2BM0A 3L7ZA 4DR6I 4IZKB 4JI1I 4JI8E 4HY1A 4XTJA 1Z0BA 2NN6E 3QT8A 3ZZUA 4MU3A 2C38B 4OX9E 4UTGA 3KRNA 2JE6A 2VQEI 2VQFI 5A2QQ 2DEJA 5LMUI 4LFAE 3GLLA 4MU4A 1N0UA 2CZ9A 4DU8A 3OTOI 5JEAE 2BA0D 5IT9Q 1HR0I 2UXCI 4HACA 4LF9I 4JI0E 1YH8A 2HHHE 4DR4I 1HNZE 3QT5A 2F1DA 2UUCE 1I94I 1H74A 1VISA 4FW7A 5C0XE 4ISAA 1Z0CA 3JAMC 4YHHE 4AQYE 2NN6C 4GQUA 3WU3A 5C0XA 2VESA 1E3HA 2O1TA 2IOQA 1B62A 1P42A 1XNQI 4EMDA 1RREA 4KHPI 4X66E 2ZM6I 2PO1B 1USUA 5JEAC 1OYSA 4MYUA 1FWLA 1XMOE 5DRQA 2Z5CB 3D4JA 4ZVIA 4HYMA 1WUUA 4FW5A 4DPTA 5K36A 3B78A 2JEAB 4B3RE 2WW4A 3K1JA 2IERA 3Q6NA 4IZJB 4DPWA 4UT4A 3J81C 2A2DA 5JEAD 1B63A 4USKA 4JYAE 4MYTA 3T1HI 4BA2B 3V2UC 4HXZA 4DU7A 4LFCE 4RPFA 1H73A 4IZKA 4DR3E 1UDOA 2NN6B 4DR1E 4WUBA 4GKJE 3JAMQ 2C38A 5C0XD 4DV5I 1HK7A 4YY3I 2HK3A 4LF6E 3WU5A 2HK2A 1Z0EA 4KQVA 5JEAB 4JI6E 3ZZTA 4NBQA 4FW4A 4LF5E 1N34I 2XEXA 2J7KA 3PS2A 5GMDA 3GCMA 1UDSA 1S4EA 4NXNI 5IWAI 4FW9A 2HKJA 1NHHA 1OYRA 2V2QA 3J7AM 1IBLE 2O1UA 5LL6R 5EKWA 4LF8I 3U1YA 4JV5E 3J81Q 4BA1B 1IBMI 4JI3E 1XNRE 4LFBE 4JI4E 3P3CA 1HNXE 1Y4UA 2WNRB 1EA6A 1Z0VA 2BV3A 2PO1A 4X65I 3HKMA 2UXBI 4R1FA 4DV4E 1FWKA 4DR6E 1OYPA 2Z5CA 4JI1E 3PYFA 3V5RA 2IOPA 4DV6I 4OKGA 3H4LA 2VQEE 2VQFE 2JEAA 5LMUE 5DROA 4IZJA 2BA0G 1ZM4A 3ZM7A 3OTOE 1NHJA 4BA2A 1UDQA 1HR0E 1ZXNA 2UXCE 2GO4A 4LF9E 4DR4E 3HULA 3LTOA 3DD6A 3M85G 2NN6A 1I94E 4X64I 2AE8A 2Z5EA 1Y6ZA 2PNMA 5FWKA 5LMNI 1UDNA 2R42A 2C37B 4GKKI 5JEAA 3WU6A 1KKHA 4Z7CA 1HNWI 2X7IA 1XNQE 4KHPE 2ZM6E 4B3MI 1ZXMA 3M85D 4DV3I 5BR8I 4N3OA 4DV1I 4DR7I 4FWDA 3B4TA 4AIDA 4IZJD 5GMEA 2Z5BA 1OJ4A 2A2CA 2WP8B 2ZITA 4BA1A 2O3ZA 4X62I 2CVEA 2ZBKB 4OO1F 1N32I 1DARA 4JI2I 2WNRA 3T1HE 4I3HA 4OO1C 2NN6D 1ELOA 3ZKBA 1Z5AA 3J80C 4U3DA 1MX0A 2PO0B 3P06A 2PNLA 2BR2B 4DV5E 2J65A 1EI1A 4PRVA 4YY3E 4JI7I 2V34A 2GQ0A 4DXLA 4DV2I 2JT2A 4Z7YA 1N34E 2F4VI 3P3GA 1IBKI 3PYDA 1N36I 1VI7A 4AM3A 4NXNE 1FNMA 4FW6A 5IWAE 1ZM3A 2UUBI 3ZKDA 4DR2I 2UU9I 4MQYA 2C37A 4LCGA 4LF8E 4LOMA 1Y60A 1IBME 4OO1B 5K36F 4DV7I 4DR5I 3H1CA 4K0KI 2JEBB 4IFDE 2IESA 1J5EI 1H7SA 3J80Q 4X65E 2UXBE 4DPYA 5FLXC 2R3VA 1N33I 1XXEA 3PYGA 2LJPA 1FJGI 4FWHA 4DV6E 2C39B 4QNJA 2WP8A 2EFGA 2UUAI 4DV0I 4MDTA 4DUZI 1S16A 4LCFA 5DNXA 4IFDF 1H7UA 4B3SI 4WUDA 4IFDC 3T1YI 2E5LI 2PNZB 2PO0A 1A6FA 2BR2A 4DPUA 4X64E 2O1WA 2PO2B 2BA1D 5DRPA 2BM1A 3WU4A 5LMNE 4M1KA 4JI5I 1KIJA 3PRYA 1K47A 4WUCA 1MU5A 4DUYI 4GKKE 2UXDI 2HFUA 4OZEA 1Z0WA 4P52A 1HNWE 4NXMI 3QT7A 4FW3A 4B3ME 1XMQI 5FLXQ 3CDJA 5BR8E 4DV3E 1R6LA 4DV1E 4DR7E 3GMEA 1XHKA 3PS1A 4FWGA 4OO1E 3CWVA 4LF7I 1U2RA 4MU0A 2O1VA 2V2ZA 1USVA 3J7AG 4OO1A 4X62E 4LF4I 4B3TI 3Q1QA 4JG4A 1PKPA 1N32E 3K85A 2NPFA 4PRXA 4JI2E 1ZM9A 3M7ND 4IFDB 1Z5CA 2JEBA 3LNUA 4JI8I 1MG7A 1Y4SA 3PYEA 1R6MA 4OX9I 2HKEA 3GONA 4IS9A 3P76A 3ZZ0A 4ED4A 4LFAI 2HFSA 2OI2A 1Z0GA 4JI7E 2NN6F 2C39A 4DV2E 1NHIA 4JI0I 2HHHI 1HNZI 2GS8A 5JEAF 2F4VE 2UUCI 1IBKE 1PVGA 1N36E 1RR9A 2PNZA 2UUBE 4YHHI 4AQYI 4OO1D 4DR2E 2UU9E 5K36E 2PO2A 2CG9A 3M6AA 1QZRA 5C0XF 3QT6A 1NZ0A 1RHYA 4DV7E 4DR5E 4X66I 2V8PA 5C0XC 3HJCA 2AJ4A 1Z0TA 1KVKA 1PIEA 4K0KE 4MU1A 1XMOI 3L7ZB 1J5EE 5DRRA 2DEIA 4PU9A 1N33E 4P7AA 2JE6B 4B3RI 1FKAE 4U3BA 1FJGE 1UEKA 5K36C 4JYAI 2Q2EB 2GO3A 2UUAE 4DV0E 4DPXA 3P3EA 4DUZE 3K17A 4LFCI 5ELWA 4HACB 4LPFA 4IFDA 1FI4A 4DR3I 1D6TA 1E3PA 1KTVA 4B3SE 3U1KA 4DR1I 1N0VC 4GKJI 3T1YE 2E5LE 3Q6MA
chains in the Genus database with same CATH topology
4LCGA 2J65A 4MDTA 3PS2A 1P42A 3NZKA 4FW3A 4LCFA 2JT2A 3UHMA 2O3ZA 4IS9A 4U3BA 3P76A 4J3DA 4OKGA 2IESA 4LCHA 1YH8A 1YHCA 3PS1A 3PS3A 5DRQA 5DROA 2GO3A 3P3GA 4FW5A 3U1YA 3P3EA 1XXEA 4FW7A 4FW6A 5DRPA 3P3CA 4ISAA 4U3DA 2GO4A 2IERA 4FW4A 5DRRA 2VESA 4MQYA 4OZEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LCG A;  2J65 A;  4MDT A;  3PS2 A;  1P42 A;  3NZK A;  4FW3 A;  4LCF A;  2JT2 A;  3UHM A;  2O3Z A;  4IS9 A;  4U3B A;  3P76 A;  4J3D A;  4OKG A;  2IES A;  4LCH A;  1YH8 A;  1YHC A;  3PS1 A;  3PS3 A;  5DRQ A;  5DRO A;  2GO3 A;  3P3G A;  4FW5 A;  3U1Y A;  3P3E A;  1XXE A;  4FW7 A;  4FW6 A;  5DRP A;  3P3C A;  4ISA A;  4U3D A;  2GO4 A;  2IER A;  4FW4 A;  5DRR A;  2VES A;  4MQY A;  4OZE A; 
#chains in the Genus database with same CATH topology
 2BA1 G;  3F0N A;  5K36 D;  4LF6 I;  4URL A;  2VF3 A;  5A2Q C;  3UHM A;  5C0X B;  1Y5Y A;  4JI5 E;  2Z5B B;  4JI6 I;  3B82 A;  4DUY E;  5EL9 A;  2CGE A;  2UXD E;  4LF5 I;  3PS3 A;  5IT9 C;  1ZM2 A;  4NXM E;  4AIM A;  1XMQ E;  4USM A;  1IBL I;  2E1R A;  3B8H A;  1Z59 A;  2V2V A;  5K36 B;  2X36 A;  4QNK A;  4JV5 I;  3LPS A;  4JI3 I;  4LFB I;  4FN5 A;  5DNL A;  1XNR I;  3NZK A;  4JI4 I;  4LF7 E;  3CDI A;  4IFD D;  1HNX I;  1Z5B A;  4J3D A;  5L3J A;  4B3T E;  4LF4 E;  3M7N G;  1BKN A;  4LCH A;  1YHC A;  4DV4 I;  1H72 C;  2BM0 A;  3L7Z A;  4DR6 I;  4IZK B;  4JI1 I;  4JI8 E;  4HY1 A;  4XTJ A;  1Z0B A;  2NN6 E;  3QT8 A;  3ZZU A;  4MU3 A;  2C38 B;  4OX9 E;  4UTG A;  3KRN A;  2JE6 A;  2VQE I;  2VQF I;  5A2Q Q;  2DEJ A;  5LMU I;  4LFA E;  3GLL A;  4MU4 A;  1N0U A;  2CZ9 A;  4DU8 A;  3OTO I;  5JEA E;  2BA0 D;  5IT9 Q;  1HR0 I;  2UXC I;  4HAC A;  4LF9 I;  4JI0 E;  1YH8 A;  2HHH E;  4DR4 I;  1HNZ E;  3QT5 A;  2F1D A;  2UUC E;  1I94 I;  1H74 A;  1VIS A;  4FW7 A;  5C0X E;  4ISA A;  1Z0C A;  3JAM C;  4YHH E;  4AQY E;  2NN6 C;  4GQU A;  3WU3 A;  5C0X A;  2VES A;  1E3H A;  2O1T A;  2IOQ A;  1B62 A;  1P42 A;  1XNQ I;  4EMD A;  1RRE A;  4KHP I;  4X66 E;  2ZM6 I;  2PO1 B;  1USU A;  5JEA C;  1OYS A;  4MYU A;  1FWL A;  1XMO E;  5DRQ A;  2Z5C B;  3D4J A;  4ZVI A;  4HYM A;  1WUU A;  4FW5 A;  4DPT A;  5K36 A;  3B78 A;  2JEA B;  4B3R E;  2WW4 A;  3K1J A;  2IER A;  3Q6N A;  4IZJ B;  4DPW A;  4UT4 A;  3J81 C;  2A2D A;  5JEA D;  1B63 A;  4USK A;  4JYA E;  4MYT A;  3T1H I;  4BA2 B;  3V2U C;  4HXZ A;  4DU7 A;  4LFC E;  4RPF A;  1H73 A;  4IZK A;  4DR3 E;  1UDO A;  2NN6 B;  4DR1 E;  4WUB A;  4GKJ E;  3JAM Q;  2C38 A;  5C0X D;  4DV5 I;  1HK7 A;  4YY3 I;  2HK3 A;  4LF6 E;  3WU5 A;  2HK2 A;  1Z0E A;  4KQV A;  5JEA B;  4JI6 E;  3ZZT A;  4NBQ A;  4FW4 A;  4LF5 E;  1N34 I;  2XEX A;  2J7K A;  3PS2 A;  5GMD A;  3GCM A;  1UDS A;  1S4E A;  4NXN I;  5IWA I;  4FW9 A;  2HKJ A;  1NHH A;  1OYR A;  2V2Q A;  3J7A M;  1IBL E;  2O1U A;  5LL6 R;  5EKW A;  4LF8 I;  3U1Y A;  4JV5 E;  3J81 Q;  4BA1 B;  1IBM I;  4JI3 E;  1XNR E;  4LFB E;  4JI4 E;  3P3C A;  1HNX E;  1Y4U A;  2WNR B;  1EA6 A;  1Z0V A;  2BV3 A;  2PO1 A;  4X65 I;  3HKM A;  2UXB I;  4R1F A;  4DV4 E;  1FWK A;  4DR6 E;  1OYP A;  2Z5C A;  4JI1 E;  3PYF A;  3V5R A;  2IOP A;  4DV6 I;  4OKG A;  3H4L A;  2VQE E;  2VQF E;  2JEA A;  5LMU E;  5DRO A;  4IZJ A;  2BA0 G;  1ZM4 A;  3ZM7 A;  3OTO E;  1NHJ A;  4BA2 A;  1UDQ A;  1HR0 E;  1ZXN A;  2UXC E;  2GO4 A;  4LF9 E;  4DR4 E;  3HUL A;  3LTO A;  3DD6 A;  3M85 G;  2NN6 A;  1I94 E;  4X64 I;  2AE8 A;  2Z5E A;  1Y6Z A;  2PNM A;  5FWK A;  5LMN I;  1UDN A;  2R42 A;  2C37 B;  4GKK I;  5JEA A;  3WU6 A;  1KKH A;  4Z7C A;  1HNW I;  2X7I A;  1XNQ E;  4KHP E;  2ZM6 E;  4B3M I;  1ZXM A;  3M85 D;  4DV3 I;  5BR8 I;  4N3O A;  4DV1 I;  4DR7 I;  4FWD A;  3B4T A;  4AID A;  4IZJ D;  5GME A;  2Z5B A;  1OJ4 A;  2A2C A;  2WP8 B;  2ZIT A;  4BA1 A;  2O3Z A;  4X62 I;  2CVE A;  2ZBK B;  4OO1 F;  1N32 I;  1DAR A;  4JI2 I;  2WNR A;  3T1H E;  4I3H A;  4OO1 C;  2NN6 D;  1ELO A;  3ZKB A;  1Z5A A;  3J80 C;  4U3D A;  1MX0 A;  2PO0 B;  3P06 A;  2PNL A;  2BR2 B;  4DV5 E;  2J65 A;  1EI1 A;  4PRV A;  4YY3 E;  4JI7 I;  2V34 A;  2GQ0 A;  4DXL A;  4DV2 I;  2JT2 A;  4Z7Y A;  1N34 E;  2F4V I;  3P3G A;  1IBK I;  3PYD A;  1N36 I;  1VI7 A;  4AM3 A;  4NXN E;  1FNM A;  4FW6 A;  5IWA E;  1ZM3 A;  2UUB I;  3ZKD A;  4DR2 I;  2UU9 I;  4MQY A;  2C37 A;  4LCG A;  4LF8 E;  4LOM A;  1Y60 A;  1IBM E;  4OO1 B;  5K36 F;  4DV7 I;  4DR5 I;  3H1C A;  4K0K I;  2JEB B;  4IFD E;  2IES A;  1J5E I;  1H7S A;  3J80 Q;  4X65 E;  2UXB E;  4DPY A;  5FLX C;  2R3V A;  1N33 I;  1XXE A;  3PYG A;  2LJP A;  1FJG I;  4FWH A;  4DV6 E;  2C39 B;  4QNJ A;  2WP8 A;  2EFG A;  2UUA I;  4DV0 I;  4MDT A;  4DUZ I;  1S16 A;  4LCF A;  5DNX A;  4IFD F;  1H7U A;  4B3S I;  4WUD A;  4IFD C;  3T1Y I;  2E5L I;  2PNZ B;  2PO0 A;  1A6F A;  2BR2 A;  4DPU A;  4X64 E;  2O1W A;  2PO2 B;  2BA1 D;  5DRP A;  2BM1 A;  3WU4 A;  5LMN E;  4M1K A;  4JI5 I;  1KIJ A;  3PRY A;  1K47 A;  4WUC A;  1MU5 A;  4DUY I;  4GKK E;  2UXD I;  2HFU A;  4OZE A;  1Z0W A;  4P52 A;  1HNW E;  4NXM I;  3QT7 A;  4FW3 A;  4B3M E;  1XMQ I;  5FLX Q;  3CDJ A;  5BR8 E;  4DV3 E;  1R6L A;  4DV1 E;  4DR7 E;  3GME A;  1XHK A;  3PS1 A;  4FWG A;  4OO1 E;  3CWV A;  4LF7 I;  1U2R A;  4MU0 A;  2O1V A;  2V2Z A;  1USV A;  3J7A G;  4OO1 A;  4X62 E;  4LF4 I;  4B3T I;  3Q1Q A;  4JG4 A;  1PKP A;  1N32 E;  3K85 A;  2NPF A;  4PRX A;  4JI2 E;  1ZM9 A;  3M7N D;  4IFD B;  1Z5C A;  2JEB A;  3LNU A;  4JI8 I;  1MG7 A;  1Y4S A;  3PYE A;  1R6M A;  4OX9 I;  2HKE A;  3GON A;  4IS9 A;  3P76 A;  3ZZ0 A;  4ED4 A;  4LFA I;  2HFS A;  2OI2 A;  1Z0G A;  4JI7 E;  2NN6 F;  2C39 A;  4DV2 E;  1NHI A;  4JI0 I;  2HHH I;  1HNZ I;  2GS8 A;  5JEA F;  2F4V E;  2UUC I;  1IBK E;  1PVG A;  1N36 E;  1RR9 A;  2PNZ A;  2UUB E;  4YHH I;  4AQY I;  4OO1 D;  4DR2 E;  2UU9 E;  5K36 E;  2PO2 A;  2CG9 A;  3M6A A;  1QZR A;  5C0X F;  3QT6 A;  1NZ0 A;  1RHY A;  4DV7 E;  4DR5 E;  4X66 I;  2V8P A;  5C0X C;  3HJC A;  2AJ4 A;  1Z0T A;  1KVK A;  1PIE A;  4K0K E;  4MU1 A;  1XMO I;  3L7Z B;  1J5E E;  5DRR A;  2DEI A;  4PU9 A;  1N33 E;  4P7A A;  2JE6 B;  4B3R I;  1FKA E;  4U3B A;  1FJG E;  1UEK A;  5K36 C;  4JYA I;  2Q2E B;  2GO3 A;  2UUA E;  4DV0 E;  4DPX A;  3P3E A;  4DUZ E;  3K17 A;  4LFC I;  5ELW A;  4HAC B;  4LPF A;  4IFD A;  1FI4 A;  4DR3 I;  1D6T A;  1E3P A;  1KTV A;  4B3S E;  3U1K A;  4DR1 I;  1N0V C;  4GKJ I;  3T1Y E;  2E5L E;  3Q6M A; 
#chains in the Genus database with same CATH homology
 4LCG A;  2J65 A;  4MDT A;  3PS2 A;  1P42 A;  3NZK A;  4FW3 A;  4LCF A;  2JT2 A;  3UHM A;  2O3Z A;  4IS9 A;  4U3B A;  3P76 A;  4J3D A;  4OKG A;  2IES A;  4LCH A;  1YH8 A;  1YHC A;  3PS1 A;  3PS3 A;  5DRQ A;  5DRO A;  2GO3 A;  3P3G A;  4FW5 A;  3U1Y A;  3P3E A;  1XXE A;  4FW7 A;  4FW6 A;  5DRP A;  3P3C A;  4ISA A;  4U3D A;  2GO4 A;  2IER A;  4FW4 A;  5DRR A;  2VES A;  4MQY A;  4OZE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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