4J6OA

Crystal structure of the phosphatase domain of c. thermocellum (bacterial) pnkp
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
261
structure length
261
Chain Sequence
SMLWNNKKDEHGPFDIIGDIHGCYDELKMLLEKLGYLIEEVEGGVGSGKYRVTHPEGRKVLFLGDLVDRGPKITEVLKLVMGMVKSGIALCVPGNHDVKLLRKLNGRDVQITHGLDRTLEQLAKEPQEFIEEVKAFIDGLVSHYVLDDGKLVVAHAGMKEEFQGRGSGKVREFALYGETTGETDEYGLPVRYDWASDYRGKALVVYGHTPQAEVLKVNNTINIDTGCVFGGKLTAYRYPEREIVDVKALKTYYEPALEHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Clostridium thermocellum
publication title Structure and mechanism of the 2',3' phosphatase component of the bacterial Pnkp-Hen1 RNA repair system.
pubmed doi rcsb
molecule keywords Metallophosphoesterase
total genus 88
structure length 261
sequence length 261
chains with identical sequence B
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2013-02-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 4j6oA00
4DSYA 2QJCA 4FBWA 3DSDA 5JPFA 4ZX2A 4H1SA 2NYLC 3PSNA 2WDEA 4LU9A 5JJTA 4TUIA 3H64A 5C1VA 1NNWA 2YVTA 3AV0A 3RL4A 5DNYA 4H2BA 4LTYA 3C5WC 3N5UA 4V0XA 3JYFA 1HO5A 3LL8A 3QFMA 2IAEC 4FBQA 3DSCA 4H1YP 3H61A 4JA9A 2WDCA 3H63A 4MOVA 4MP0A 1XM7A 1T70A 3C9FA 4O5GA 4IL1A 1KBPA 1Z2XA 3EGGA 3QFOA 4I5NC 3RL3A 1UTEA 4DHLA 3FGAC 4V0WA 4ORBA 2BCDA 1T71A 2WDDA 4NZVA 2HYOA 1WAO1 1G5BA 4FCXA 3THOB 4M0VA 3H66A 4TUGA 3PSOA 2WDFA 2JOGA 1OIDA 4J6OA 2HY1A 1II7A 3QFNA 2P6BA 4F0ZA 2GJUA 1S70A 2HYPA 4H2IA 3DW8C 3CK2A 3QG5C 1QHWA 4UT3A 1S8EA 3IB7A 4O43A 3GVEA 2XMOA 4YKEA 3H68A 2Z72A 2QFPA 1S3NA 4G9JA 4H2FA 2BDXA 2USHA 4UWQA 1S95A 1M63A 3H60A 3IB8A 3AUZA 2NXFA 4O4KA 4UT3B 1AUIA 4ORAA 1HPUA 2AHDA 1SU1A 2Z06A 3QFKA 2O8AA 5GTUA 1U32A 2A22A 2O8GA 4V0VA 2CV9A 4FBKA 1USHA 3THNA 2NYMC 4DT2A 4JA7A 4OR9A 3K7VC 4WWLA 4I5LC 4KBPA 3RL5A 3ZU0A 5J28A 1OI8A 2NPPC 5HPEA 1WARA 2DFJA 3TGHA 2Q8UA 3KBPA 4HD0A 4ZVZA 2Z1AA 1HP1A 4MOYA 2R17A 1S3MA 3IVDA 5B8IA 4B2OA 4O24A 3H62B 2KKNA 1S3LA 3RQZA 5F3WA 4H2GA 3K7WC 3E7AA 4ORCA 5JPEA 1Z2WA 1JK7A 1V73A 1XZWA 2IE4C 3ICFA 1QFCA 1MF8A 1FJMA 4LACC 2IE3C 3HVQA 4KKZA 3E7BA 3H67A 3IVEA 4UT2A 5INBA 1UF3A 1W24A 4XPNA 2BQ8X 4Q7FA 1TCOA 2QFRA 3P71C 3H69A 4IYPC 3V4YA 3T1IA 3ZTVA 1IT6A 1OIEA 5IOHA 5EQVA 3EGHA 2ZBMA
chains in the Genus database with same CATH superfamily
4DSYA 2QJCA 4FBWA 3DSDA 5JPFA 4ZX2A 4H1SA 2NYLC 3PSNA 2WDEA 4LU9A 5JJTA 4TUIA 3H64A 5C1VA 1NNWA 2YVTA 3AV0A 3RL4A 5DNYA 4H2BA 4LTYA 3C5WC 3N5UA 4V0XA 3JYFA 1HO5A 3LL8A 3D03A 3QFMA 2IAEC 4FBQA 3DSCA 4H1YP 3H61A 4JA9A 2WDCA 3H63A 4MOVA 4MP0A 1XM7A 1T70A 3C9FA 4O5GA 4IL1A 1KBPA 1Z2XA 3EGGA 3QFOA 4I5NC 3RL3A 1UTEA 4DHLA 3FGAC 4V0WA 4ORBA 2BCDA 1T71A 2WDDA 4NZVA 2HYOA 1WAO1 1G5BA 4FCXA 3THOB 4M0VA 3H66A 4TUGA 3PSOA 2WDFA 2JOGA 1OIDA 4J6OA 2HY1A 1II7A 3QFNA 2P6BA 2DXLA 4F0ZA 2GJUA 1S70A 2HYPA 4H2IA 3DW8C 3CK2A 3QG5C 1QHWA 4UT3A 1S8EA 2ZOAA 3IB7A 4O43A 3GVEA 2XMOA 4YKEA 3H68A 2Z72A 2QFPA 1S3NA 4G9JA 4H2FA 2YEQA 2BDXA 2USHA 4UWQA 1S95A 1M63A 3H60A 3IB8A 3AUZA 2NXFA 4O4KA 4UT3B 1AUIA 4ORAA 1HPUA 2AHDA 2DXNA 1SU1A 2Z06A 3QFKA 2O8AA 5GTUA 1U32A 2A22A 2O8GA 4V0VA 2CV9A 4FBKA 1USHA 3THNA 2NYMC 4DT2A 4JA7A 4OR9A 3K7VC 4WWLA 4I5LC 4KBPA 3RL5A 3ZU0A 5J28A 1OI8A 2NPPC 5HPEA 1WARA 2DFJA 3TGHA 2Q8UA 3KBPA 4HD0A 4ZVZA 2Z1AA 1HP1A 4MOYA 2R17A 1S3MA 3E0JA 3IVDA 5B8IA 4B2OA 4O24A 3H62B 2KKNA 1S3LA 3RQZA 5F3WA 2ZO9B 3FLOA 3K7WC 4H2GA 3E7AA 4ORCA 5JPEA 1Z2WA 1JK7A 1V73A 1XZWA 2IE4C 3ICFA 1QFCA 1MF8A 1FJMA 4LACC 2IE3C 3HVQA 4KKZA 3E7BA 3H67A 3IVEA 4UT2A 5INBA 1UF3A 1W24A 4XPNA 2BQ8X 4Q7FA 1TCOA 2QFRA 3P71C 3H69A 4IYPC 3V4YA 3T1IA 3ZTVA 1IT6A 1OIEA 5IOHA 5EQVA 3EGHA 2ZBMA
chains in the Genus database with same CATH topology
4DSYA 2QJCA 4FBWA 3DSDA 5JPFA 4ZX2A 4H1SA 2NYLC 3PSNA 2WDEA 4LU9A 5JJTA 4TUIA 3H64A 5C1VA 1NNWA 2YVTA 3AV0A 3RL4A 5DNYA 4H2BA 4LTYA 3C5WC 3N5UA 4V0XA 3JYFA 1HO5A 3LL8A 3D03A 3QFMA 2IAEC 4FBQA 3DSCA 4H1YP 3H61A 4JA9A 2WDCA 3H63A 4MOVA 4MP0A 1XM7A 1T70A 3C9FA 4O5GA 4IL1A 1KBPA 1Z2XA 3EGGA 3QFOA 4I5NC 3RL3A 1UTEA 4DHLA 3FGAC 4V0WA 4ORBA 2BCDA 1T71A 2WDDA 4NZVA 2HYOA 1WAO1 1G5BA 4FCXA 3THOB 4M0VA 3H66A 4TUGA 3PSOA 2WDFA 2JOGA 1OIDA 4J6OA 2HY1A 1II7A 3QFNA 2P6BA 2DXLA 4F0ZA 2GJUA 1S70A 2HYPA 4H2IA 3DW8C 3CK2A 3QG5C 1QHWA 4UT3A 1S8EA 2ZOAA 3IB7A 4O43A 3GVEA 2XMOA 4YKEA 3H68A 2Z72A 2QFPA 1S3NA 4G9JA 4H2FA 2YEQA 2BDXA 2USHA 4UWQA 1S95A 1M63A 3H60A 3IB8A 3AUZA 2NXFA 4O4KA 4UT3B 1AUIA 4ORAA 1HPUA 2AHDA 2DXNA 1SU1A 2Z06A 3QFKA 2O8AA 5GTUA 1U32A 2A22A 2O8GA 4V0VA 2CV9A 4FBKA 1USHA 3THNA 2NYMC 4DT2A 4JA7A 4OR9A 3K7VC 4WWLA 4I5LC 4KBPA 3RL5A 3ZU0A 5J28A 1OI8A 2NPPC 5HPEA 1WARA 2DFJA 3TGHA 2Q8UA 3KBPA 4HD0A 4ZVZA 2Z1AA 1HP1A 4MOYA 2R17A 1S3MA 3E0JA 3IVDA 5B8IA 4B2OA 4O24A 3H62B 2KKNA 1S3LA 3RQZA 5F3WA 2ZO9B 3FLOA 3K7WC 4H2GA 3E7AA 4ORCA 5JPEA 1Z2WA 1JK7A 1V73A 1XZWA 2IE4C 3ICFA 1QFCA 1MF8A 1FJMA 4LACC 2IE3C 3HVQA 4KKZA 3E7BA 3H67A 3IVEA 4UT2A 5INBA 1UF3A 1W24A 4XPNA 2BQ8X 4Q7FA 1TCOA 2QFRA 3P71C 3H69A 4IYPC 3V4YA 3T1IA 3ZTVA 1IT6A 1OIEA 5IOHA 5EQVA 3EGHA 2ZBMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DSY A;  2QJC A;  4FBW A;  3DSD A;  5JPF A;  4ZX2 A;  4H1S A;  2NYL C;  3PSN A;  2WDE A;  4LU9 A;  5JJT A;  4TUI A;  3H64 A;  5C1V A;  1NNW A;  2YVT A;  3AV0 A;  3RL4 A;  5DNY A;  4H2B A;  4LTY A;  3C5W C;  3N5U A;  4V0X A;  3JYF A;  1HO5 A;  3LL8 A;  3QFM A;  2IAE C;  4FBQ A;  3DSC A;  4H1Y P;  3H61 A;  4JA9 A;  2WDC A;  3H63 A;  4MOV A;  4MP0 A;  1XM7 A;  1T70 A;  3C9F A;  4O5G A;  4IL1 A;  1KBP A;  1Z2X A;  3EGG A;  3QFO A;  4I5N C;  3RL3 A;  1UTE A;  4DHL A;  3FGA C;  4V0W A;  4ORB A;  2BCD A;  1T71 A;  2WDD A;  4NZV A;  2HYO A;  1WAO 1;  1G5B A;  4FCX A;  3THO B;  4M0V A;  3H66 A;  4TUG A;  3PSO A;  2WDF A;  2JOG A;  1OID A;  4J6O A;  2HY1 A;  1II7 A;  3QFN A;  2P6B A;  4F0Z A;  2GJU A;  1S70 A;  2HYP A;  4H2I A;  3DW8 C;  3CK2 A;  3QG5 C;  1QHW A;  4UT3 A;  1S8E A;  3IB7 A;  4O43 A;  3GVE A;  2XMO A;  4YKE A;  3H68 A;  2Z72 A;  2QFP A;  1S3N A;  4G9J A;  4H2F A;  2BDX A;  2USH A;  4UWQ A;  1S95 A;  1M63 A;  3H60 A;  3IB8 A;  3AUZ A;  2NXF A;  4O4K A;  4UT3 B;  1AUI A;  4ORA A;  1HPU A;  2AHD A;  1SU1 A;  2Z06 A;  3QFK A;  2O8A A;  5GTU A;  1U32 A;  2A22 A;  2O8G A;  4V0V A;  2CV9 A;  4FBK A;  1USH A;  3THN A;  2NYM C;  4DT2 A;  4JA7 A;  4OR9 A;  3K7V C;  4WWL A;  4I5L C;  4KBP A;  3RL5 A;  3ZU0 A;  5J28 A;  1OI8 A;  2NPP C;  5HPE A;  1WAR A;  2DFJ A;  3TGH A;  2Q8U A;  3KBP A;  4HD0 A;  4ZVZ A;  2Z1A A;  1HP1 A;  4MOY A;  2R17 A;  1S3M A;  3IVD A;  5B8I A;  4B2O A;  4O24 A;  3H62 B;  2KKN A;  1S3L A;  3RQZ A;  5F3W A;  4H2G A;  3K7W C;  3E7A A;  4ORC A;  5JPE A;  1Z2W A;  1JK7 A;  1V73 A;  1XZW A;  2IE4 C;  3ICF A;  1QFC A;  1MF8 A;  1FJM A;  4LAC C;  2IE3 C;  3HVQ A;  4KKZ A;  3E7B A;  3H67 A;  3IVE A;  4UT2 A;  5INB A;  1UF3 A;  1W24 A;  4XPN A;  2BQ8 X;  4Q7F A;  1TCO A;  2QFR A;  3P71 C;  3H69 A;  4IYP C;  3V4Y A;  3T1I A;  3ZTV A;  1IT6 A;  1OIE A;  5IOH A;  5EQV A;  3EGH A;  2ZBM A; 
#chains in the Genus database with same CATH topology
 4DSY A;  2QJC A;  4FBW A;  3DSD A;  5JPF A;  4ZX2 A;  4H1S A;  2NYL C;  3PSN A;  2WDE A;  4LU9 A;  5JJT A;  4TUI A;  3H64 A;  5C1V A;  1NNW A;  2YVT A;  3AV0 A;  3RL4 A;  5DNY A;  4H2B A;  4LTY A;  3C5W C;  3N5U A;  4V0X A;  3JYF A;  1HO5 A;  3LL8 A;  3D03 A;  3QFM A;  2IAE C;  4FBQ A;  3DSC A;  4H1Y P;  3H61 A;  4JA9 A;  2WDC A;  3H63 A;  4MOV A;  4MP0 A;  1XM7 A;  1T70 A;  3C9F A;  4O5G A;  4IL1 A;  1KBP A;  1Z2X A;  3EGG A;  3QFO A;  4I5N C;  3RL3 A;  1UTE A;  4DHL A;  3FGA C;  4V0W A;  4ORB A;  2BCD A;  1T71 A;  2WDD A;  4NZV A;  2HYO A;  1WAO 1;  1G5B A;  4FCX A;  3THO B;  4M0V A;  3H66 A;  4TUG A;  3PSO A;  2WDF A;  2JOG A;  1OID A;  4J6O A;  2HY1 A;  1II7 A;  3QFN A;  2P6B A;  2DXL A;  4F0Z A;  2GJU A;  1S70 A;  2HYP A;  4H2I A;  3DW8 C;  3CK2 A;  3QG5 C;  1QHW A;  4UT3 A;  1S8E A;  2ZOA A;  3IB7 A;  4O43 A;  3GVE A;  2XMO A;  4YKE A;  3H68 A;  2Z72 A;  2QFP A;  1S3N A;  4G9J A;  4H2F A;  2YEQ A;  2BDX A;  2USH A;  4UWQ A;  1S95 A;  1M63 A;  3H60 A;  3IB8 A;  3AUZ A;  2NXF A;  4O4K A;  4UT3 B;  1AUI A;  4ORA A;  1HPU A;  2AHD A;  2DXN A;  1SU1 A;  2Z06 A;  3QFK A;  2O8A A;  5GTU A;  1U32 A;  2A22 A;  2O8G A;  4V0V A;  2CV9 A;  4FBK A;  1USH A;  3THN A;  2NYM C;  4DT2 A;  4JA7 A;  4OR9 A;  3K7V C;  4WWL A;  4I5L C;  4KBP A;  3RL5 A;  3ZU0 A;  5J28 A;  1OI8 A;  2NPP C;  5HPE A;  1WAR A;  2DFJ A;  3TGH A;  2Q8U A;  3KBP A;  4HD0 A;  4ZVZ A;  2Z1A A;  1HP1 A;  4MOY A;  2R17 A;  1S3M A;  3E0J A;  3IVD A;  5B8I A;  4B2O A;  4O24 A;  3H62 B;  2KKN A;  1S3L A;  3RQZ A;  5F3W A;  2ZO9 B;  3FLO A;  3K7W C;  4H2G A;  3E7A A;  4ORC A;  5JPE A;  1Z2W A;  1JK7 A;  1V73 A;  1XZW A;  2IE4 C;  3ICF A;  1QFC A;  1MF8 A;  1FJM A;  4LAC C;  2IE3 C;  3HVQ A;  4KKZ A;  3E7B A;  3H67 A;  3IVE A;  4UT2 A;  5INB A;  1UF3 A;  1W24 A;  4XPN A;  2BQ8 X;  4Q7F A;  1TCO A;  2QFR A;  3P71 C;  3H69 A;  4IYP C;  3V4Y A;  3T1I A;  3ZTV A;  1IT6 A;  1OIE A;  5IOH A;  5EQV A;  3EGH A;  2ZBM A; 
#chains in the Genus database with same CATH homology
 4DSY A;  2QJC A;  4FBW A;  3DSD A;  5JPF A;  4ZX2 A;  4H1S A;  2NYL C;  3PSN A;  2WDE A;  4LU9 A;  5JJT A;  4TUI A;  3H64 A;  5C1V A;  1NNW A;  2YVT A;  3AV0 A;  3RL4 A;  5DNY A;  4H2B A;  4LTY A;  3C5W C;  3N5U A;  4V0X A;  3JYF A;  1HO5 A;  3LL8 A;  3D03 A;  3QFM A;  2IAE C;  4FBQ A;  3DSC A;  4H1Y P;  3H61 A;  4JA9 A;  2WDC A;  3H63 A;  4MOV A;  4MP0 A;  1XM7 A;  1T70 A;  3C9F A;  4O5G A;  4IL1 A;  1KBP A;  1Z2X A;  3EGG A;  3QFO A;  4I5N C;  3RL3 A;  1UTE A;  4DHL A;  3FGA C;  4V0W A;  4ORB A;  2BCD A;  1T71 A;  2WDD A;  4NZV A;  2HYO A;  1WAO 1;  1G5B A;  4FCX A;  3THO B;  4M0V A;  3H66 A;  4TUG A;  3PSO A;  2WDF A;  2JOG A;  1OID A;  4J6O A;  2HY1 A;  1II7 A;  3QFN A;  2P6B A;  2DXL A;  4F0Z A;  2GJU A;  1S70 A;  2HYP A;  4H2I A;  3DW8 C;  3CK2 A;  3QG5 C;  1QHW A;  4UT3 A;  1S8E A;  2ZOA A;  3IB7 A;  4O43 A;  3GVE A;  2XMO A;  4YKE A;  3H68 A;  2Z72 A;  2QFP A;  1S3N A;  4G9J A;  4H2F A;  2YEQ A;  2BDX A;  2USH A;  4UWQ A;  1S95 A;  1M63 A;  3H60 A;  3IB8 A;  3AUZ A;  2NXF A;  4O4K A;  4UT3 B;  1AUI A;  4ORA A;  1HPU A;  2AHD A;  2DXN A;  1SU1 A;  2Z06 A;  3QFK A;  2O8A A;  5GTU A;  1U32 A;  2A22 A;  2O8G A;  4V0V A;  2CV9 A;  4FBK A;  1USH A;  3THN A;  2NYM C;  4DT2 A;  4JA7 A;  4OR9 A;  3K7V C;  4WWL A;  4I5L C;  4KBP A;  3RL5 A;  3ZU0 A;  5J28 A;  1OI8 A;  2NPP C;  5HPE A;  1WAR A;  2DFJ A;  3TGH A;  2Q8U A;  3KBP A;  4HD0 A;  4ZVZ A;  2Z1A A;  1HP1 A;  4MOY A;  2R17 A;  1S3M A;  3E0J A;  3IVD A;  5B8I A;  4B2O A;  4O24 A;  3H62 B;  2KKN A;  1S3L A;  3RQZ A;  5F3W A;  2ZO9 B;  3FLO A;  3K7W C;  4H2G A;  3E7A A;  4ORC A;  5JPE A;  1Z2W A;  1JK7 A;  1V73 A;  1XZW A;  2IE4 C;  3ICF A;  1QFC A;  1MF8 A;  1FJM A;  4LAC C;  2IE3 C;  3HVQ A;  4KKZ A;  3E7B A;  3H67 A;  3IVE A;  4UT2 A;  5INB A;  1UF3 A;  1W24 A;  4XPN A;  2BQ8 X;  4Q7F A;  1TCO A;  2QFR A;  3P71 C;  3H69 A;  4IYP C;  3V4Y A;  3T1I A;  3ZTV A;  1IT6 A;  1OIE A;  5IOH A;  5EQV A;  3EGH A;  2ZBM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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