4J6OA

Crystal structure of the phosphatase domain of c. thermocellum (bacterial) pnkp
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
261
structure length
261
Chain Sequence
SMLWNNKKDEHGPFDIIGDIHGCYDELKMLLEKLGYLIEEVEGGVGSGKYRVTHPEGRKVLFLGDLVDRGPKITEVLKLVMGMVKSGIALCVPGNHDVKLLRKLNGRDVQITHGLDRTLEQLAKEPQEFIEEVKAFIDGLVSHYVLDDGKLVVAHAGMKEEFQGRGSGKVREFALYGETTGETDEYGLPVRYDWASDYRGKALVVYGHTPQAEVLKVNNTINIDTGCVFGGKLTAYRYPEREIVDVKALKTYYEPALEHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and mechanism of the 2',3' phosphatase component of the bacterial Pnkp-Hen1 RNA repair system.
pubmed doi rcsb
source organism Clostridium thermocellum
molecule tags Hydrolase
molecule keywords Metallophosphoesterase
total genus 88
structure length 261
sequence length 261
chains with identical sequence B
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2013-02-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 4j6oA00
2USHA 1QHWA 2IE3C 3QG5C 1M63A 4O4KA 1W24A 2CV9A 4DT2A 3K7WC 3THNA 1Z2WA 2Z72A 3AUZA 3RL5A 3T1IA 4KKZA 5JPFA 3K7VC 1KBPA 1IT6A 3GVEA 4DHLA 1OIDA 2IAEC 3THOB 1UF3A 2NPPC 2DFJA 3N5UA 3IVEA 1SU1A 3H60A 3ICFA 5DNYA 4H1YP 2QJCA 4ZVZA 3DSCA 3P71C 4LACC 3V4YA 4V0WA 5EQVA 3DSDA 3RQZA 1USHA 4O24A 1HO5A 3H69A 3H62B 4LU9A 4NZVA 2HY1A 2WDCA 4V0XA 4YKEA 3C5WC 3IB7A 1V73A 4FBWA 2WDDA 1II7A 4M0VA 3PSOA 4FBQA 4J6OA 4KBPA 4FBKA 5JJTA 3H66A 4H1SA 4UT3A 4TUGA 3RL4A 2QFRA 3E7AA 3EGGA 1HP1A 2AHDA 4H2BA 4TUIA 3RL3A 4MP0A 1S70A 3FGAC 4I5LC 4JA7A 4ZX2A 1S3LA 2XMOA 1QFCA 3AV0A 4OR9A 5C1VA 2P6BA 5JPEA 4O43A 4MOYA 3IVDA 3QFMA 5B8IA 2BDXA 3KBPA 5HPEA 1OI8A 3CK2A 2BQ8X 4IL1A 4I5NC 4XPNA 3H67A 5J28A 2KKNA 4LTYA 2O8GA 4O5GA 3ZTVA 4WWLA 1S3NA 3ZU0A 1NNWA 4DSYA 2QFPA 5F3WA 3DW8C 2NYLC 2HYPA 3QFNA 4FCXA 4JA9A 3C9FA 4G9JA 1FJMA 2Q8UA 2Z06A 3H64A 2ZBMA 4H2IA 3PSNA 4V0VA 1T71A 1XZWA 3IB8A 4H2GA 2O8AA 4H2FA 2Z1AA 4Q7FA 4ORCA 1WAO1 3EGHA 4B2OA 4MOVA 2GJUA 1OIEA 1T70A 1S8EA 3QFOA 3TGHA 5IOHA 2HYOA 1S3MA 2YVTA 4UT3B 1U32A 2NYMC 3JYFA 1AUIA 4ORBA 1UTEA 3LL8A 3QFKA 4ORAA 2IE4C 2A22A 1TCOA 3HVQA 4IYPC 5GTUA 1HPUA 2JOGA 4HD0A 4UT2A 3H61A 4F0ZA 1XM7A 1JK7A 1G5BA 2WDEA 2BCDA 2R17A 3E7BA 1S95A 1WARA 2NXFA 3H68A 3H63A 1Z2XA 4UWQA 5INBA 1MF8A 2WDFA
chains in the Genus database with same CATH superfamily
2USHA 1QHWA 2IE3C 3QG5C 1M63A 4O4KA 1W24A 2CV9A 4DT2A 3K7WC 3THNA 1Z2WA 2Z72A 3AUZA 3RL5A 3T1IA 4KKZA 5JPFA 3K7VC 1KBPA 1IT6A 3GVEA 4DHLA 1OIDA 2IAEC 3THOB 1UF3A 2NPPC 2DFJA 3N5UA 3D03A 3IVEA 1SU1A 3H60A 3ICFA 5DNYA 4H1YP 2QJCA 4ZVZA 3DSCA 3P71C 4LACC 3V4YA 4V0WA 5EQVA 3DSDA 3RQZA 1USHA 4O24A 1HO5A 3H69A 3H62B 4LU9A 4NZVA 2HY1A 2WDCA 4V0XA 4YKEA 3C5WC 3IB7A 1V73A 4FBWA 2WDDA 1II7A 4M0VA 3PSOA 4FBQA 4J6OA 4KBPA 4FBKA 5JJTA 3H66A 4H1SA 4UT3A 4TUGA 3RL4A 2QFRA 3E7AA 3EGGA 1HP1A 2AHDA 4H2BA 4TUIA 3RL3A 2DXLA 4MP0A 1S70A 3FGAC 4I5LC 4JA7A 4ZX2A 1S3LA 2XMOA 1QFCA 3AV0A 4OR9A 5C1VA 2P6BA 5JPEA 2ZOAA 4O43A 4MOYA 3IVDA 3QFMA 5B8IA 2BDXA 3KBPA 5HPEA 1OI8A 3CK2A 2BQ8X 4IL1A 2YEQA 4I5NC 4XPNA 3H67A 5J28A 2KKNA 4LTYA 2O8GA 4O5GA 3ZTVA 4WWLA 1S3NA 3ZU0A 1NNWA 4DSYA 2QFPA 5F3WA 3DW8C 2NYLC 2HYPA 3QFNA 4FCXA 4JA9A 3C9FA 4G9JA 1FJMA 2Q8UA 2Z06A 3H64A 2ZBMA 4H2IA 3PSNA 4V0VA 1T71A 1XZWA 3IB8A 4H2GA 2O8AA 4H2FA 2Z1AA 4Q7FA 4ORCA 1WAO1 3EGHA 4B2OA 4MOVA 2GJUA 1OIEA 1T70A 1S8EA 3QFOA 2ZO9B 3TGHA 5IOHA 2HYOA 1S3MA 2YVTA 4UT3B 1U32A 3E0JA 2NYMC 3JYFA 1AUIA 4ORBA 1UTEA 3LL8A 3QFKA 4ORAA 2IE4C 2A22A 1TCOA 3FLOA 3HVQA 4IYPC 5GTUA 1HPUA 2JOGA 4HD0A 4UT2A 3H61A 4F0ZA 1XM7A 1JK7A 1G5BA 2WDEA 2BCDA 2DXNA 2R17A 3E7BA 1S95A 1WARA 2NXFA 3H68A 3H63A 1Z2XA 4UWQA 5INBA 1MF8A 2WDFA
chains in the Genus database with same CATH topology
2USHA 1QHWA 2IE3C 3QG5C 1M63A 4O4KA 1W24A 2CV9A 4DT2A 3K7WC 3THNA 1Z2WA 2Z72A 3AUZA 3RL5A 3T1IA 4KKZA 5JPFA 3K7VC 1KBPA 1IT6A 3GVEA 4DHLA 1OIDA 2IAEC 3THOB 1UF3A 2NPPC 2DFJA 3N5UA 3D03A 3IVEA 1SU1A 3H60A 3ICFA 5DNYA 4H1YP 2QJCA 4ZVZA 3DSCA 3P71C 4LACC 3V4YA 4V0WA 5EQVA 3DSDA 3RQZA 1USHA 4O24A 1HO5A 3H69A 3H62B 4LU9A 4NZVA 2HY1A 2WDCA 4V0XA 4YKEA 3C5WC 3IB7A 1V73A 4FBWA 2WDDA 1II7A 4M0VA 3PSOA 4FBQA 4J6OA 4KBPA 4FBKA 5JJTA 3H66A 4H1SA 4UT3A 4TUGA 3RL4A 2QFRA 3E7AA 3EGGA 1HP1A 2AHDA 4H2BA 4TUIA 3RL3A 2DXLA 4MP0A 1S70A 3FGAC 4I5LC 4JA7A 4ZX2A 1S3LA 2XMOA 1QFCA 3AV0A 4OR9A 5C1VA 2P6BA 5JPEA 2ZOAA 4O43A 4MOYA 3IVDA 3QFMA 5B8IA 2BDXA 3KBPA 5HPEA 1OI8A 3CK2A 2BQ8X 4IL1A 2YEQA 4I5NC 4XPNA 3H67A 5J28A 2KKNA 4LTYA 2O8GA 4O5GA 3ZTVA 4WWLA 1S3NA 3ZU0A 1NNWA 4DSYA 2QFPA 5F3WA 3DW8C 2NYLC 2HYPA 3QFNA 4FCXA 4JA9A 3C9FA 4G9JA 1FJMA 2Q8UA 2Z06A 3H64A 2ZBMA 4H2IA 3PSNA 4V0VA 1T71A 1XZWA 3IB8A 4H2GA 2O8AA 4H2FA 2Z1AA 4Q7FA 4ORCA 1WAO1 3EGHA 4B2OA 4MOVA 2GJUA 1OIEA 1T70A 1S8EA 3QFOA 2ZO9B 3TGHA 5IOHA 2HYOA 1S3MA 2YVTA 4UT3B 1U32A 3E0JA 2NYMC 3JYFA 1AUIA 4ORBA 1UTEA 3LL8A 3QFKA 4ORAA 2IE4C 2A22A 1TCOA 3FLOA 3HVQA 4IYPC 5GTUA 1HPUA 2JOGA 4HD0A 4UT2A 3H61A 4F0ZA 1XM7A 1JK7A 1G5BA 2WDEA 2BCDA 2DXNA 2R17A 3E7BA 1S95A 1WARA 2NXFA 3H68A 3H63A 1Z2XA 4UWQA 5INBA 1MF8A 2WDFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2USH A;  1QHW A;  2IE3 C;  3QG5 C;  1M63 A;  4O4K A;  1W24 A;  2CV9 A;  4DT2 A;  3K7W C;  3THN A;  1Z2W A;  2Z72 A;  3AUZ A;  3RL5 A;  3T1I A;  4KKZ A;  5JPF A;  3K7V C;  1KBP A;  1IT6 A;  3GVE A;  4DHL A;  1OID A;  2IAE C;  3THO B;  1UF3 A;  2NPP C;  2DFJ A;  3N5U A;  3IVE A;  1SU1 A;  3H60 A;  3ICF A;  5DNY A;  4H1Y P;  2QJC A;  4ZVZ A;  3DSC A;  3P71 C;  4LAC C;  3V4Y A;  4V0W A;  5EQV A;  3DSD A;  3RQZ A;  1USH A;  4O24 A;  1HO5 A;  3H69 A;  3H62 B;  4LU9 A;  4NZV A;  2HY1 A;  2WDC A;  4V0X A;  4YKE A;  3C5W C;  3IB7 A;  1V73 A;  4FBW A;  2WDD A;  1II7 A;  4M0V A;  3PSO A;  4FBQ A;  4J6O A;  4KBP A;  4FBK A;  5JJT A;  3H66 A;  4H1S A;  4UT3 A;  4TUG A;  3RL4 A;  2QFR A;  3E7A A;  3EGG A;  1HP1 A;  2AHD A;  4H2B A;  4TUI A;  3RL3 A;  4MP0 A;  1S70 A;  3FGA C;  4I5L C;  4JA7 A;  4ZX2 A;  1S3L A;  2XMO A;  1QFC A;  3AV0 A;  4OR9 A;  5C1V A;  2P6B A;  5JPE A;  4O43 A;  4MOY A;  3IVD A;  3QFM A;  5B8I A;  2BDX A;  3KBP A;  5HPE A;  1OI8 A;  3CK2 A;  2BQ8 X;  4IL1 A;  4I5N C;  4XPN A;  3H67 A;  5J28 A;  2KKN A;  4LTY A;  2O8G A;  4O5G A;  3ZTV A;  4WWL A;  1S3N A;  3ZU0 A;  1NNW A;  4DSY A;  2QFP A;  5F3W A;  3DW8 C;  2NYL C;  2HYP A;  3QFN A;  4FCX A;  4JA9 A;  3C9F A;  4G9J A;  1FJM A;  2Q8U A;  2Z06 A;  3H64 A;  2ZBM A;  4H2I A;  3PSN A;  4V0V A;  1T71 A;  1XZW A;  3IB8 A;  4H2G A;  2O8A A;  4H2F A;  2Z1A A;  4Q7F A;  4ORC A;  1WAO 1;  3EGH A;  4B2O A;  4MOV A;  2GJU A;  1OIE A;  1T70 A;  1S8E A;  3QFO A;  3TGH A;  5IOH A;  2HYO A;  1S3M A;  2YVT A;  4UT3 B;  1U32 A;  2NYM C;  3JYF A;  1AUI A;  4ORB A;  1UTE A;  3LL8 A;  3QFK A;  4ORA A;  2IE4 C;  2A22 A;  1TCO A;  3HVQ A;  4IYP C;  5GTU A;  1HPU A;  2JOG A;  4HD0 A;  4UT2 A;  3H61 A;  4F0Z A;  1XM7 A;  1JK7 A;  1G5B A;  2WDE A;  2BCD A;  2R17 A;  3E7B A;  1S95 A;  1WAR A;  2NXF A;  3H68 A;  3H63 A;  1Z2X A;  4UWQ A;  5INB A;  1MF8 A;  2WDF A; 
#chains in the Genus database with same CATH topology
 2USH A;  1QHW A;  2IE3 C;  3QG5 C;  1M63 A;  4O4K A;  1W24 A;  2CV9 A;  4DT2 A;  3K7W C;  3THN A;  1Z2W A;  2Z72 A;  3AUZ A;  3RL5 A;  3T1I A;  4KKZ A;  5JPF A;  3K7V C;  1KBP A;  1IT6 A;  3GVE A;  4DHL A;  1OID A;  2IAE C;  3THO B;  1UF3 A;  2NPP C;  2DFJ A;  3N5U A;  3D03 A;  3IVE A;  1SU1 A;  3H60 A;  3ICF A;  5DNY A;  4H1Y P;  2QJC A;  4ZVZ A;  3DSC A;  3P71 C;  4LAC C;  3V4Y A;  4V0W A;  5EQV A;  3DSD A;  3RQZ A;  1USH A;  4O24 A;  1HO5 A;  3H69 A;  3H62 B;  4LU9 A;  4NZV A;  2HY1 A;  2WDC A;  4V0X A;  4YKE A;  3C5W C;  3IB7 A;  1V73 A;  4FBW A;  2WDD A;  1II7 A;  4M0V A;  3PSO A;  4FBQ A;  4J6O A;  4KBP A;  4FBK A;  5JJT A;  3H66 A;  4H1S A;  4UT3 A;  4TUG A;  3RL4 A;  2QFR A;  3E7A A;  3EGG A;  1HP1 A;  2AHD A;  4H2B A;  4TUI A;  3RL3 A;  2DXL A;  4MP0 A;  1S70 A;  3FGA C;  4I5L C;  4JA7 A;  4ZX2 A;  1S3L A;  2XMO A;  1QFC A;  3AV0 A;  4OR9 A;  5C1V A;  2P6B A;  5JPE A;  2ZOA A;  4O43 A;  4MOY A;  3IVD A;  3QFM A;  5B8I A;  2BDX A;  3KBP A;  5HPE A;  1OI8 A;  3CK2 A;  2BQ8 X;  4IL1 A;  2YEQ A;  4I5N C;  4XPN A;  3H67 A;  5J28 A;  2KKN A;  4LTY A;  2O8G A;  4O5G A;  3ZTV A;  4WWL A;  1S3N A;  3ZU0 A;  1NNW A;  4DSY A;  2QFP A;  5F3W A;  3DW8 C;  2NYL C;  2HYP A;  3QFN A;  4FCX A;  4JA9 A;  3C9F A;  4G9J A;  1FJM A;  2Q8U A;  2Z06 A;  3H64 A;  2ZBM A;  4H2I A;  3PSN A;  4V0V A;  1T71 A;  1XZW A;  3IB8 A;  4H2G A;  2O8A A;  4H2F A;  2Z1A A;  4Q7F A;  4ORC A;  1WAO 1;  3EGH A;  4B2O A;  4MOV A;  2GJU A;  1OIE A;  1T70 A;  1S8E A;  3QFO A;  2ZO9 B;  3TGH A;  5IOH A;  2HYO A;  1S3M A;  2YVT A;  4UT3 B;  1U32 A;  3E0J A;  2NYM C;  3JYF A;  1AUI A;  4ORB A;  1UTE A;  3LL8 A;  3QFK A;  4ORA A;  2IE4 C;  2A22 A;  1TCO A;  3FLO A;  3HVQ A;  4IYP C;  5GTU A;  1HPU A;  2JOG A;  4HD0 A;  4UT2 A;  3H61 A;  4F0Z A;  1XM7 A;  1JK7 A;  1G5B A;  2WDE A;  2BCD A;  2DXN A;  2R17 A;  3E7B A;  1S95 A;  1WAR A;  2NXF A;  3H68 A;  3H63 A;  1Z2X A;  4UWQ A;  5INB A;  1MF8 A;  2WDF A; 
#chains in the Genus database with same CATH homology
 2USH A;  1QHW A;  2IE3 C;  3QG5 C;  1M63 A;  4O4K A;  1W24 A;  2CV9 A;  4DT2 A;  3K7W C;  3THN A;  1Z2W A;  2Z72 A;  3AUZ A;  3RL5 A;  3T1I A;  4KKZ A;  5JPF A;  3K7V C;  1KBP A;  1IT6 A;  3GVE A;  4DHL A;  1OID A;  2IAE C;  3THO B;  1UF3 A;  2NPP C;  2DFJ A;  3N5U A;  3D03 A;  3IVE A;  1SU1 A;  3H60 A;  3ICF A;  5DNY A;  4H1Y P;  2QJC A;  4ZVZ A;  3DSC A;  3P71 C;  4LAC C;  3V4Y A;  4V0W A;  5EQV A;  3DSD A;  3RQZ A;  1USH A;  4O24 A;  1HO5 A;  3H69 A;  3H62 B;  4LU9 A;  4NZV A;  2HY1 A;  2WDC A;  4V0X A;  4YKE A;  3C5W C;  3IB7 A;  1V73 A;  4FBW A;  2WDD A;  1II7 A;  4M0V A;  3PSO A;  4FBQ A;  4J6O A;  4KBP A;  4FBK A;  5JJT A;  3H66 A;  4H1S A;  4UT3 A;  4TUG A;  3RL4 A;  2QFR A;  3E7A A;  3EGG A;  1HP1 A;  2AHD A;  4H2B A;  4TUI A;  3RL3 A;  2DXL A;  4MP0 A;  1S70 A;  3FGA C;  4I5L C;  4JA7 A;  4ZX2 A;  1S3L A;  2XMO A;  1QFC A;  3AV0 A;  4OR9 A;  5C1V A;  2P6B A;  5JPE A;  2ZOA A;  4O43 A;  4MOY A;  3IVD A;  3QFM A;  5B8I A;  2BDX A;  3KBP A;  5HPE A;  1OI8 A;  3CK2 A;  2BQ8 X;  4IL1 A;  2YEQ A;  4I5N C;  4XPN A;  3H67 A;  5J28 A;  2KKN A;  4LTY A;  2O8G A;  4O5G A;  3ZTV A;  4WWL A;  1S3N A;  3ZU0 A;  1NNW A;  4DSY A;  2QFP A;  5F3W A;  3DW8 C;  2NYL C;  2HYP A;  3QFN A;  4FCX A;  4JA9 A;  3C9F A;  4G9J A;  1FJM A;  2Q8U A;  2Z06 A;  3H64 A;  2ZBM A;  4H2I A;  3PSN A;  4V0V A;  1T71 A;  1XZW A;  3IB8 A;  4H2G A;  2O8A A;  4H2F A;  2Z1A A;  4Q7F A;  4ORC A;  1WAO 1;  3EGH A;  4B2O A;  4MOV A;  2GJU A;  1OIE A;  1T70 A;  1S8E A;  3QFO A;  2ZO9 B;  3TGH A;  5IOH A;  2HYO A;  1S3M A;  2YVT A;  4UT3 B;  1U32 A;  3E0J A;  2NYM C;  3JYF A;  1AUI A;  4ORB A;  1UTE A;  3LL8 A;  3QFK A;  4ORA A;  2IE4 C;  2A22 A;  1TCO A;  3FLO A;  3HVQ A;  4IYP C;  5GTU A;  1HPU A;  2JOG A;  4HD0 A;  4UT2 A;  3H61 A;  4F0Z A;  1XM7 A;  1JK7 A;  1G5B A;  2WDE A;  2BCD A;  2DXN A;  2R17 A;  3E7B A;  1S95 A;  1WAR A;  2NXF A;  3H68 A;  3H63 A;  1Z2X A;  4UWQ A;  5INB A;  1MF8 A;  2WDF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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