4J6TA

Crystal structure of tyrosinase from bacillus megaterium f197a mutant
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
287
structure length
287
Chain Sequence
KYRVRKNVLHLTDTEKRDFVRTVLILKEKGIYDRYIAWHGAAGKFHTPPGSDRNAAHMSSAFLPWHREYLLRFERDLQSINPEVTLPYWEWETDAQMQDPSQSQIWSADFMGGNGNPIKDFIVDTGPFAAGRWTTIDEQGNPSGGLKRNFGATKEAPTLPTRDDVLNALKITQYDTPPWDMTSQNSFRNQLEGAINGPQLHNRVHRWVGGQMGVVPTAPNDPVFFLHHANVDRIWAVWQIIHRNQNYQPMKNGPFGQNFRDPMYPWNTTPEDVMNHRKLGYVYDIEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Tyrosinase
publication title The mechanism of copper uptake by tyrosinase from Bacillus megaterium.
pubmed doi rcsb
source organism Bacillus megaterium
total genus 103
structure length 287
sequence length 287
chains with identical sequence B
ec nomenclature ec 1.14.18.1: Tyrosinase.
pdb deposition date 2013-02-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00264 Tyrosinase Common central domain of tyrosinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1280.10 Mainly Alpha Orthogonal Bundle di-copper center containing domain from catechol oxidase Di-copper center containing domain from catechol oxidase 4j6tA00
1WXCA 2Y9XA 3W6WA 4OUAA 3AWVA 4L37B 4P6TA 4D87A 1HCYA 3WJMA 3HHSB 3AWYA 4YZWA 3AX0A 1WX4A 4Z0YA 4Z0ZA 3W6QA 4J6UA 3WKYA 4J3RA 1BT3A 2ZWFA 4P6SA 3AWTA 4HD6A 3AWZA 5I3BA 1HC1A 1WX5A 3NQ0A 1BUGA 3NQ5A 2ZMZA 5I38A 2ZWEA 4L37A 3HHSA 2AHLA 3AWUA 4Z10A 3NM8A 1JS8A 3NTMA 2ZWDA 4OUAB 1WX2A 1BT2A 3NPYA 3AWSA 4J6TA 2ZMYA 3WJMB 5I3AA 1NOLA 4J3PA 3AWXA 1OXYA 4P6RA 2ZWGA 3QJOA 2AHKA 3GWJA 3NQ1A 4J6VA 2ZMXA 4J3QA 4HD4A 5CE9A 2P3XA 3AWWA 2Y9WA 4HD7A 1LL1A 1BT1A 1LNLA 1LLAA
chains in the Genus database with same CATH superfamily
1WXCA 2Y9XA 3W6WA 4OUAA 3AWVA 4L37B 4P6TA 4D87A 1HCYA 3WJMA 3HHSB 3AWYA 4YZWA 3AX0A 1WX4A 4Z0YA 4Z0ZA 3W6QA 4J6UA 3WKYA 4J3RA 1BT3A 2ZWFA 4P6SA 3AWTA 4HD6A 3AWZA 5I3BA 1HC1A 1WX5A 3NQ0A 1BUGA 3NQ5A 2ZMZA 5I38A 2ZWEA 4L37A 3HHSA 2AHLA 3AWUA 4Z10A 3NM8A 1JS8A 3NTMA 2ZWDA 4OUAB 1WX2A 1BT2A 3NPYA 3AWSA 4J6TA 2ZMYA 3WJMB 5I3AA 1NOLA 4J3PA 3AWXA 1OXYA 4P6RA 2ZWGA 3QJOA 2AHKA 3GWJA 3NQ1A 4J6VA 2ZMXA 4J3QA 4HD4A 5CE9A 2P3XA 3AWWA 2Y9WA 4HD7A 1LL1A 1BT1A 1LNLA 1LLAA
chains in the Genus database with same CATH topology
1WXCA 2Y9XA 3W6WA 4OUAA 3AWVA 4L37B 4P6TA 4D87A 1HCYA 3WJMA 3HHSB 3AWYA 4YZWA 3AX0A 1WX4A 4Z0YA 4Z0ZA 3W6QA 4J6UA 3WKYA 4J3RA 1BT3A 2ZWFA 4P6SA 3AWTA 4HD6A 3AWZA 5I3BA 1HC1A 1WX5A 3NQ0A 1BUGA 3NQ5A 2ZMZA 5I38A 2ZWEA 4L37A 3HHSA 2AHLA 3AWUA 4Z10A 3NM8A 1JS8A 3NTMA 2ZWDA 4OUAB 1WX2A 1BT2A 3NPYA 3AWSA 4J6TA 2ZMYA 3WJMB 5I3AA 1NOLA 4J3PA 3AWXA 1OXYA 4P6RA 2ZWGA 3QJOA 2AHKA 3GWJA 3NQ1A 4J6VA 2ZMXA 4J3QA 4HD4A 5CE9A 2P3XA 3AWWA 2Y9WA 4HD7A 1LL1A 1BT1A 1LNLA 1LLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WXC A;  2Y9X A;  3W6W A;  4OUA A;  3AWV A;  4L37 B;  4P6T A;  4D87 A;  1HCY A;  3WJM A;  3HHS B;  3AWY A;  4YZW A;  3AX0 A;  1WX4 A;  4Z0Y A;  4Z0Z A;  3W6Q A;  4J6U A;  3WKY A;  4J3R A;  1BT3 A;  2ZWF A;  4P6S A;  3AWT A;  4HD6 A;  3AWZ A;  5I3B A;  1HC1 A;  1WX5 A;  3NQ0 A;  1BUG A;  3NQ5 A;  2ZMZ A;  5I38 A;  2ZWE A;  4L37 A;  3HHS A;  2AHL A;  3AWU A;  4Z10 A;  3NM8 A;  1JS8 A;  3NTM A;  2ZWD A;  4OUA B;  1WX2 A;  1BT2 A;  3NPY A;  3AWS A;  4J6T A;  2ZMY A;  3WJM B;  5I3A A;  1NOL A;  4J3P A;  3AWX A;  1OXY A;  4P6R A;  2ZWG A;  3QJO A;  2AHK A;  3GWJ A;  3NQ1 A;  4J6V A;  2ZMX A;  4J3Q A;  4HD4 A;  5CE9 A;  2P3X A;  3AWW A;  2Y9W A;  4HD7 A;  1LL1 A;  1BT1 A;  1LNL A;  1LLA A; 
#chains in the Genus database with same CATH topology
 1WXC A;  2Y9X A;  3W6W A;  4OUA A;  3AWV A;  4L37 B;  4P6T A;  4D87 A;  1HCY A;  3WJM A;  3HHS B;  3AWY A;  4YZW A;  3AX0 A;  1WX4 A;  4Z0Y A;  4Z0Z A;  3W6Q A;  4J6U A;  3WKY A;  4J3R A;  1BT3 A;  2ZWF A;  4P6S A;  3AWT A;  4HD6 A;  3AWZ A;  5I3B A;  1HC1 A;  1WX5 A;  3NQ0 A;  1BUG A;  3NQ5 A;  2ZMZ A;  5I38 A;  2ZWE A;  4L37 A;  3HHS A;  2AHL A;  3AWU A;  4Z10 A;  3NM8 A;  1JS8 A;  3NTM A;  2ZWD A;  4OUA B;  1WX2 A;  1BT2 A;  3NPY A;  3AWS A;  4J6T A;  2ZMY A;  3WJM B;  5I3A A;  1NOL A;  4J3P A;  3AWX A;  1OXY A;  4P6R A;  2ZWG A;  3QJO A;  2AHK A;  3GWJ A;  3NQ1 A;  4J6V A;  2ZMX A;  4J3Q A;  4HD4 A;  5CE9 A;  2P3X A;  3AWW A;  2Y9W A;  4HD7 A;  1LL1 A;  1BT1 A;  1LNL A;  1LLA A; 
#chains in the Genus database with same CATH homology
 1WXC A;  2Y9X A;  3W6W A;  4OUA A;  3AWV A;  4L37 B;  4P6T A;  4D87 A;  1HCY A;  3WJM A;  3HHS B;  3AWY A;  4YZW A;  3AX0 A;  1WX4 A;  4Z0Y A;  4Z0Z A;  3W6Q A;  4J6U A;  3WKY A;  4J3R A;  1BT3 A;  2ZWF A;  4P6S A;  3AWT A;  4HD6 A;  3AWZ A;  5I3B A;  1HC1 A;  1WX5 A;  3NQ0 A;  1BUG A;  3NQ5 A;  2ZMZ A;  5I38 A;  2ZWE A;  4L37 A;  3HHS A;  2AHL A;  3AWU A;  4Z10 A;  3NM8 A;  1JS8 A;  3NTM A;  2ZWD A;  4OUA B;  1WX2 A;  1BT2 A;  3NPY A;  3AWS A;  4J6T A;  2ZMY A;  3WJM B;  5I3A A;  1NOL A;  4J3P A;  3AWX A;  1OXY A;  4P6R A;  2ZWG A;  3QJO A;  2AHK A;  3GWJ A;  3NQ1 A;  4J6V A;  2ZMX A;  4J3Q A;  4HD4 A;  5CE9 A;  2P3X A;  3AWW A;  2Y9W A;  4HD7 A;  1LL1 A;  1BT1 A;  1LNL A;  1LLA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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