4J7GA

Crystal structure of evaa, a 2,3-dehydratase in complex with dtdp-fucose and dtdp-rhamnose
Total Genus 135
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
135
sequence length
458
structure length
448
Chain Sequence
AVRPRDHHDYADRIALSAATTDGVQMRTEDVRAWIAERRDANVFHVERIPFADLDQWWFEGVTGNLVHRSGRFFTIEGLHVIEHDGPHGDGPYREWQQPVIRQPEVGILGILAKEFDGVLHFLMQAKMEPGNPNLVQLSPTVQATRSNYTNVKLIEYFAPPDPERVIVDVLQAEQGSWFFRKSNRNMIVETVDDVPLWDDFCWLTLGQIAELMHEDETINMNSRSVLSCLPYQDITPRALFSDVQLLSWFTNERSRHDVRVRRIPLADVCGWKQGAEEIEHEDGRYFKVLAVAVKGSISWTQPLVESVDLGVVAFLVRKIDGVPHVLVQARVDGGFLDTVELAPTVQCTPLNYAHLPAEEAPPFLDLVQNAPRSRIRYEAIHSEEGGRFLGVRARYLVIDADEAIDPPPGYAWVTPAQLTALTRHGHYVNVEARTLLACINAAAAQPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Biosynthetic protein
molecule keywords EvaA 2,3-dehydratase
publication title Structure of EvaA: A Paradigm for Sugar 2,3-Dehydratases.
pubmed doi rcsb
source organism Amycolatopsis orientalis
total genus 135
structure length 448
sequence length 458
chains with identical sequence B
ec nomenclature ec 4.2.1.159: dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase.
pdb deposition date 2013-02-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03559 Hexose_dehydrat NDP-hexose 2,3-dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.79.40 Alpha Beta Alpha-Beta Complex Nucleoside Triphosphate Pyrophosphohydrolase Nucleoside Triphosphate Pyrophosphohydrolase 4j7gA02
4J7HA 4J7GA
chains in the Genus database with same CATH superfamily
2G74A 5FSMA 2R5WA 2ICKA 1V8VA 4HFQA 5IW5A 5ANSA 3X0SA 2Q9PA 2DSDA 2VNQA 3AC9A 4KG4A 1MQWA 3SMDA 2DUKA 3FCMA 1V8TA 4S2YA 1V8IA 4V14A 1K26A 2YVMA 5FSNA 1Q33A 1VC9A 1X83A 2CL3A 5GHMA 3MDIA 1G0SA 2PQVA 3EXQA 1KTGA 3FFUA 4KG3A 2KDWA 5GHOA 2GT4A 4ILQA 5FSIA 3COUA 3HHJA 2I8TA 1V8YA 2A8QA 2FMLA 2O5WA 3MCFA 3N77A 5DDGA 5ANTA 3A6TA 1RYAA 2QJTA 1MK1A 1VK6A 2AZWA 3DKUA 3Q2SA 1HZTA 3CNGA 3WHWA 5GHIA 3U53A 4K6EA 1HX3A 1PVFA 1SU2A 1R67A 5DEQA 2W4EA 3X0JA 1U20A 1Q54A 3X0KA 4C9XA 1V8NA 2I8UA 3HYQA 3SONA 1G9QA 2YVOA 4JZVA 3GWYA 3FJYA 4N1TA 3Q2TA 1KT9A 1PUNA 1V8RA 3FK9A 2FKBA 3X0IA 3X0OA 3E57A 1RRQA 3P6YA 5C8LA 5BS6A 1NFSA 3I7UA 3X0MA 5ANWA 2B0VA 5CFJA 3MGMA 3X0LA 1VC8A 1PUQA 2CZRA 4N1UA 4JZSA 1JKNA 2O5FA 1XSCA 1KHZA 1VIUA 2O1CA 2FVVA 3GG6A 4JZTA 2I6KA 1X84A 2GT2A 2A8PA 1VRLA 1JRKA 4NFWA 1SJYA 3A6SA 3GRNA 3KVHA 1MUTA 3H95A 5DPKA 4S2VA 2A8SA 3Q4IA 3Q93A 3RH7A 4HVYA 1PUSA 2DHOA 3X0RA 2A6TA 1QVJA 1Q27A 3QSJA 5FSLA 2A8TA 3O61A 3G0QA 1F3YA 2XSQA 3DUPA 1XSBA 1NQZA 4YPHA 4S2XA 1K2EA 1OW2A 3A6VA 4J7HA 1VIQA 4J7GA 3J7Ye 3ID9A 2B2KA 2B06A 5GHJA 3EF5A 3F13A 3GZ5A 2G73A 3F6AA 5C7TA 5BONA 1PPXA 2J8QA 4YOQA 3X0NA 1NQYA 3MDGA 4YPRA 1SZ3A 2YVNA 3BM4A 1IRYA 1VHZA 4IJXA 5GHPA 2ICJA 1MR2A 1XSAA 2QKMB 3A6UA 5ANUA 5C7QA 4C9WA 1RRSA 2DSCA 4MPOA 3EESA 3GZ6A 3X0QA 5DD4A 3O69A 3ZR0A 1PPVA 3P5TA 2A8RA 3FSPA 3GZ8A 5FSKA 3BAPA 3O52A 1V8MA 3ACAA 1X51A 2KDVA 2RRKA 1PPWA 1VCDA 3BHOA 4JZUA 5GHNA 2VNPA 3R03A 2DSBA 2PNYA 4KTBA 4ICKA 3X0PA 5IW4A 4DYWA 1MP2A 1GA7A 4S2WA 1MQEA 1I9AA 4KYXA 2GB5A 3O8SA 2QJOA 2JVBA 5ANVA 3EEUA 1TUMA 5CFIA 4ZG0A 3OGAA 3I7VA 5ISYA 5HZXA 3O6ZA 4NFXA 3SHDA 5FSOA 2YVPA 3I9XA 3Q91A 5I8UA 3ZR1A 3L85A 5LPGA 1V8SA 3N9UA 2YYHA 3Q1PA 1NFZA 1V8LA 1V8UA 1V8WA 1VHGA 5GHQA 1SOIA
chains in the Genus database with same CATH topology
2G74A 5FSMA 2R5WA 2ICKA 1V8VA 4HFQA 5IW5A 5ANSA 3X0SA 2Q9PA 2DSDA 2VNQA 3AC9A 4KG4A 1MQWA 3SMDA 2DUKA 3FCMA 1V8TA 4S2YA 1V8IA 4V14A 1K26A 2YVMA 5FSNA 1Q33A 1VC9A 1X83A 2CL3A 5GHMA 3MDIA 1G0SA 2PQVA 3EXQA 1KTGA 3FFUA 4KG3A 2KDWA 5GHOA 2GT4A 4ILQA 5FSIA 3COUA 3HHJA 2I8TA 1V8YA 2A8QA 2FMLA 2O5WA 3MCFA 3N77A 5DDGA 5ANTA 3A6TA 1RYAA 2QJTA 1MK1A 1VK6A 2AZWA 3DKUA 3Q2SA 1HZTA 3CNGA 3WHWA 5GHIA 3U53A 4K6EA 1HX3A 1PVFA 1SU2A 1R67A 5DEQA 2W4EA 3X0JA 1U20A 1Q54A 3X0KA 4C9XA 1V8NA 2I8UA 3HYQA 3SONA 1G9QA 2YVOA 4JZVA 3GWYA 3FJYA 4N1TA 3Q2TA 1KT9A 1PUNA 1V8RA 3FK9A 2FKBA 3X0IA 3X0OA 3E57A 1RRQA 3P6YA 5C8LA 5BS6A 1NFSA 3I7UA 3X0MA 5ANWA 2B0VA 5CFJA 3MGMA 3X0LA 1VC8A 1PUQA 2CZRA 4N1UA 4JZSA 1JKNA 2O5FA 1XSCA 1KHZA 1VIUA 2O1CA 2FVVA 3GG6A 4JZTA 2I6KA 1X84A 2GT2A 2A8PA 1VRLA 1JRKA 4NFWA 1SJYA 3A6SA 3GRNA 3KVHA 1MUTA 3H95A 5DPKA 4S2VA 2A8SA 3Q4IA 3Q93A 3RH7A 4HVYA 1PUSA 2DHOA 3X0RA 2A6TA 1QVJA 1Q27A 3QSJA 5FSLA 2A8TA 3O61A 3G0QA 1F3YA 2XSQA 3DUPA 1XSBA 1NQZA 4YPHA 4S2XA 1K2EA 1OW2A 3A6VA 4J7HA 1VIQA 4J7GA 3J7Ye 3ID9A 2B2KA 2B06A 5GHJA 3EF5A 3F13A 3GZ5A 2G73A 3F6AA 5C7TA 5BONA 1PPXA 2J8QA 4YOQA 3X0NA 1NQYA 3MDGA 4YPRA 1SZ3A 2YVNA 3BM4A 1IRYA 1VHZA 4IJXA 5GHPA 2ICJA 1MR2A 1XSAA 2QKMB 3A6UA 5ANUA 5C7QA 4C9WA 1RRSA 2DSCA 4MPOA 3EESA 3GZ6A 3X0QA 5DD4A 3O69A 3ZR0A 1PPVA 3P5TA 2A8RA 3FSPA 3GZ8A 5FSKA 3BAPA 3O52A 1V8MA 3ACAA 1X51A 2KDVA 2RRKA 1PPWA 1VCDA 3BHOA 4JZUA 5GHNA 2VNPA 3R03A 2DSBA 2PNYA 4KTBA 4ICKA 3X0PA 5IW4A 4DYWA 1MP2A 1GA7A 4S2WA 1MQEA 1I9AA 4KYXA 2GB5A 3O8SA 2QJOA 2JVBA 5ANVA 3EEUA 1TUMA 5CFIA 4ZG0A 3OGAA 3I7VA 5ISYA 5HZXA 3O6ZA 4NFXA 3SHDA 5FSOA 2YVPA 3I9XA 3Q91A 5I8UA 3ZR1A 3L85A 5LPGA 1V8SA 3N9UA 2YYHA 3Q1PA 1NFZA 1V8LA 1V8UA 1V8WA 1VHGA 5GHQA 1SOIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J7H A;  4J7G A; 
#chains in the Genus database with same CATH topology
 2G74 A;  5FSM A;  2R5W A;  2ICK A;  1V8V A;  4HFQ A;  5IW5 A;  5ANS A;  3X0S A;  2Q9P A;  2DSD A;  2VNQ A;  3AC9 A;  4KG4 A;  1MQW A;  3SMD A;  2DUK A;  3FCM A;  1V8T A;  4S2Y A;  1V8I A;  4V14 A;  1K26 A;  2YVM A;  5FSN A;  1Q33 A;  1VC9 A;  1X83 A;  2CL3 A;  5GHM A;  3MDI A;  1G0S A;  2PQV A;  3EXQ A;  1KTG A;  3FFU A;  4KG3 A;  2KDW A;  5GHO A;  2GT4 A;  4ILQ A;  5FSI A;  3COU A;  3HHJ A;  2I8T A;  1V8Y A;  2A8Q A;  2FML A;  2O5W A;  3MCF A;  3N77 A;  5DDG A;  5ANT A;  3A6T A;  1RYA A;  2QJT A;  1MK1 A;  1VK6 A;  2AZW A;  3DKU A;  3Q2S A;  1HZT A;  3CNG A;  3WHW A;  5GHI A;  3U53 A;  4K6E A;  1HX3 A;  1PVF A;  1SU2 A;  1R67 A;  5DEQ A;  2W4E A;  3X0J A;  1U20 A;  1Q54 A;  3X0K A;  4C9X A;  1V8N A;  2I8U A;  3HYQ A;  3SON A;  1G9Q A;  2YVO A;  4JZV A;  3GWY A;  3FJY A;  4N1T A;  3Q2T A;  1KT9 A;  1PUN A;  1V8R A;  3FK9 A;  2FKB A;  3X0I A;  3X0O A;  3E57 A;  1RRQ A;  3P6Y A;  5C8L A;  5BS6 A;  1NFS A;  3I7U A;  3X0M A;  5ANW A;  2B0V A;  5CFJ A;  3MGM A;  3X0L A;  1VC8 A;  1PUQ A;  2CZR A;  4N1U A;  4JZS A;  1JKN A;  2O5F A;  1XSC A;  1KHZ A;  1VIU A;  2O1C A;  2FVV A;  3GG6 A;  4JZT A;  2I6K A;  1X84 A;  2GT2 A;  2A8P A;  1VRL A;  1JRK A;  4NFW A;  1SJY A;  3A6S A;  3GRN A;  3KVH A;  1MUT A;  3H95 A;  5DPK A;  4S2V A;  2A8S A;  3Q4I A;  3Q93 A;  3RH7 A;  4HVY A;  1PUS A;  2DHO A;  3X0R A;  2A6T A;  1QVJ A;  1Q27 A;  3QSJ A;  5FSL A;  2A8T A;  3O61 A;  3G0Q A;  1F3Y A;  2XSQ A;  3DUP A;  1XSB A;  1NQZ A;  4YPH A;  4S2X A;  1K2E A;  1OW2 A;  3A6V A;  4J7H A;  1VIQ A;  4J7G A;  3J7Y e;  3ID9 A;  2B2K A;  2B06 A;  5GHJ A;  3EF5 A;  3F13 A;  3GZ5 A;  2G73 A;  3F6A A;  5C7T A;  5BON A;  1PPX A;  2J8Q A;  4YOQ A;  3X0N A;  1NQY A;  3MDG A;  4YPR A;  1SZ3 A;  2YVN A;  3BM4 A;  1IRY A;  1VHZ A;  4IJX A;  5GHP A;  2ICJ A;  1MR2 A;  1XSA A;  2QKM B;  3A6U A;  5ANU A;  5C7Q A;  4C9W A;  1RRS A;  2DSC A;  4MPO A;  3EES A;  3GZ6 A;  3X0Q A;  5DD4 A;  3O69 A;  3ZR0 A;  1PPV A;  3P5T A;  2A8R A;  3FSP A;  3GZ8 A;  5FSK A;  3BAP A;  3O52 A;  1V8M A;  3ACA A;  1X51 A;  2KDV A;  2RRK A;  1PPW A;  1VCD A;  3BHO A;  4JZU A;  5GHN A;  2VNP A;  3R03 A;  2DSB A;  2PNY A;  4KTB A;  4ICK A;  3X0P A;  5IW4 A;  4DYW A;  1MP2 A;  1GA7 A;  4S2W A;  1MQE A;  1I9A A;  4KYX A;  2GB5 A;  3O8S A;  2QJO A;  2JVB A;  5ANV A;  3EEU A;  1TUM A;  5CFI A;  4ZG0 A;  3OGA A;  3I7V A;  5ISY A;  5HZX A;  3O6Z A;  4NFX A;  3SHD A;  5FSO A;  2YVP A;  3I9X A;  3Q91 A;  5I8U A;  3ZR1 A;  3L85 A;  5LPG A;  1V8S A;  3N9U A;  2YYH A;  3Q1P A;  1NFZ A;  1V8L A;  1V8U A;  1V8W A;  1VHG A;  5GHQ A;  1SOI A; 
#chains in the Genus database with same CATH homology
 2G74 A;  5FSM A;  2R5W A;  2ICK A;  1V8V A;  4HFQ A;  5IW5 A;  5ANS A;  3X0S A;  2Q9P A;  2DSD A;  2VNQ A;  3AC9 A;  4KG4 A;  1MQW A;  3SMD A;  2DUK A;  3FCM A;  1V8T A;  4S2Y A;  1V8I A;  4V14 A;  1K26 A;  2YVM A;  5FSN A;  1Q33 A;  1VC9 A;  1X83 A;  2CL3 A;  5GHM A;  3MDI A;  1G0S A;  2PQV A;  3EXQ A;  1KTG A;  3FFU A;  4KG3 A;  2KDW A;  5GHO A;  2GT4 A;  4ILQ A;  5FSI A;  3COU A;  3HHJ A;  2I8T A;  1V8Y A;  2A8Q A;  2FML A;  2O5W A;  3MCF A;  3N77 A;  5DDG A;  5ANT A;  3A6T A;  1RYA A;  2QJT A;  1MK1 A;  1VK6 A;  2AZW A;  3DKU A;  3Q2S A;  1HZT A;  3CNG A;  3WHW A;  5GHI A;  3U53 A;  4K6E A;  1HX3 A;  1PVF A;  1SU2 A;  1R67 A;  5DEQ A;  2W4E A;  3X0J A;  1U20 A;  1Q54 A;  3X0K A;  4C9X A;  1V8N A;  2I8U A;  3HYQ A;  3SON A;  1G9Q A;  2YVO A;  4JZV A;  3GWY A;  3FJY A;  4N1T A;  3Q2T A;  1KT9 A;  1PUN A;  1V8R A;  3FK9 A;  2FKB A;  3X0I A;  3X0O A;  3E57 A;  1RRQ A;  3P6Y A;  5C8L A;  5BS6 A;  1NFS A;  3I7U A;  3X0M A;  5ANW A;  2B0V A;  5CFJ A;  3MGM A;  3X0L A;  1VC8 A;  1PUQ A;  2CZR A;  4N1U A;  4JZS A;  1JKN A;  2O5F A;  1XSC A;  1KHZ A;  1VIU A;  2O1C A;  2FVV A;  3GG6 A;  4JZT A;  2I6K A;  1X84 A;  2GT2 A;  2A8P A;  1VRL A;  1JRK A;  4NFW A;  1SJY A;  3A6S A;  3GRN A;  3KVH A;  1MUT A;  3H95 A;  5DPK A;  4S2V A;  2A8S A;  3Q4I A;  3Q93 A;  3RH7 A;  4HVY A;  1PUS A;  2DHO A;  3X0R A;  2A6T A;  1QVJ A;  1Q27 A;  3QSJ A;  5FSL A;  2A8T A;  3O61 A;  3G0Q A;  1F3Y A;  2XSQ A;  3DUP A;  1XSB A;  1NQZ A;  4YPH A;  4S2X A;  1K2E A;  1OW2 A;  3A6V A;  4J7H A;  1VIQ A;  4J7G A;  3J7Y e;  3ID9 A;  2B2K A;  2B06 A;  5GHJ A;  3EF5 A;  3F13 A;  3GZ5 A;  2G73 A;  3F6A A;  5C7T A;  5BON A;  1PPX A;  2J8Q A;  4YOQ A;  3X0N A;  1NQY A;  3MDG A;  4YPR A;  1SZ3 A;  2YVN A;  3BM4 A;  1IRY A;  1VHZ A;  4IJX A;  5GHP A;  2ICJ A;  1MR2 A;  1XSA A;  2QKM B;  3A6U A;  5ANU A;  5C7Q A;  4C9W A;  1RRS A;  2DSC A;  4MPO A;  3EES A;  3GZ6 A;  3X0Q A;  5DD4 A;  3O69 A;  3ZR0 A;  1PPV A;  3P5T A;  2A8R A;  3FSP A;  3GZ8 A;  5FSK A;  3BAP A;  3O52 A;  1V8M A;  3ACA A;  1X51 A;  2KDV A;  2RRK A;  1PPW A;  1VCD A;  3BHO A;  4JZU A;  5GHN A;  2VNP A;  3R03 A;  2DSB A;  2PNY A;  4KTB A;  4ICK A;  3X0P A;  5IW4 A;  4DYW A;  1MP2 A;  1GA7 A;  4S2W A;  1MQE A;  1I9A A;  4KYX A;  2GB5 A;  3O8S A;  2QJO A;  2JVB A;  5ANV A;  3EEU A;  1TUM A;  5CFI A;  4ZG0 A;  3OGA A;  3I7V A;  5ISY A;  5HZX A;  3O6Z A;  4NFX A;  3SHD A;  5FSO A;  2YVP A;  3I9X A;  3Q91 A;  5I8U A;  3ZR1 A;  3L85 A;  5LPG A;  1V8S A;  3N9U A;  2YYH A;  3Q1P A;  1NFZ A;  1V8L A;  1V8U A;  1V8W A;  1VHG A;  5GHQ A;  1SOI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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