4J7PA

Crystal structure of saccharomyces cerevisiae sfh3
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
330
structure length
323
Chain Sequence
KNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVYWPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural determinants for phosphatidylinositol recognition by Sfh3 and substrate-induced dimer-monomer transition during lipid transfer cycles.
pubmed doi rcsb
molecule tags Lipid transport
source organism Saccharomyces cerevisiae
molecule keywords Phosphatidylinositol transfer protein PDR16
total genus 111
structure length 323
sequence length 330
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00650 CRAL_TRIO CRAL/TRIO domain
A PF03765 CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.525.10 Alpha Beta 3-Layer(aba) Sandwich Phosphatidylinositol Transfer Protein Sec14p CRAL-TRIO lipid binding domain 4j7pA00
1O6UA 4M8ZA 1OIPA 4OMKA 4CIZA 2D4QA 3PEGA 1AUAA 3HX3A 3P7ZA 4J7QA 3W67A 1OLMA 3B7NA 3HY5A 3B7ZA 3PG7A 1OLME 4TLGA 2E2XA 3B7QA 1R5LA 4UYBA 3Q8GA 4OMJA 3B74A 4FMMA 4CJ6A 3W68A 1OIZA 4J7PA
chains in the Genus database with same CATH superfamily
1O6UA 4M8ZA 1OIPA 4OMKA 4CIZA 2D4QA 3PEGA 1AUAA 3HX3A 3P7ZA 4J7QA 3W67A 1OLMA 3B7NA 3HY5A 3B7ZA 3PG7A 1OLME 4TLGA 2E2XA 3B7QA 1R5LA 4UYBA 3Q8GA 4OMJA 3B74A 4FMMA 4CJ6A 3W68A 1OIZA 4J7PA
chains in the Genus database with same CATH topology
1O6UA 4M8ZA 1OIPA 4OMKA 4CIZA 2D4QA 3PEGA 1AUAA 3HX3A 3P7ZA 4J7QA 3W67A 1OLMA 3B7NA 3HY5A 3B7ZA 3PG7A 1OLME 4TLGA 2E2XA 3B7QA 1R5LA 4UYBA 3Q8GA 4OMJA 3B74A 4FMMA 4CJ6A 3W68A 1OIZA 4J7PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O6U A;  4M8Z A;  1OIP A;  4OMK A;  4CIZ A;  2D4Q A;  3PEG A;  1AUA A;  3HX3 A;  3P7Z A;  4J7Q A;  3W67 A;  1OLM A;  3B7N A;  3HY5 A;  3B7Z A;  3PG7 A;  1OLM E;  4TLG A;  2E2X A;  3B7Q A;  1R5L A;  4UYB A;  3Q8G A;  4OMJ A;  3B74 A;  4FMM A;  4CJ6 A;  3W68 A;  1OIZ A;  4J7P A; 
#chains in the Genus database with same CATH topology
 1O6U A;  4M8Z A;  1OIP A;  4OMK A;  4CIZ A;  2D4Q A;  3PEG A;  1AUA A;  3HX3 A;  3P7Z A;  4J7Q A;  3W67 A;  1OLM A;  3B7N A;  3HY5 A;  3B7Z A;  3PG7 A;  1OLM E;  4TLG A;  2E2X A;  3B7Q A;  1R5L A;  4UYB A;  3Q8G A;  4OMJ A;  3B74 A;  4FMM A;  4CJ6 A;  3W68 A;  1OIZ A;  4J7P A; 
#chains in the Genus database with same CATH homology
 1O6U A;  4M8Z A;  1OIP A;  4OMK A;  4CIZ A;  2D4Q A;  3PEG A;  1AUA A;  3HX3 A;  3P7Z A;  4J7Q A;  3W67 A;  1OLM A;  3B7N A;  3HY5 A;  3B7Z A;  3PG7 A;  1OLM E;  4TLG A;  2E2X A;  3B7Q A;  1R5L A;  4UYB A;  3Q8G A;  4OMJ A;  3B74 A;  4FMM A;  4CJ6 A;  3W68 A;  1OIZ A;  4J7P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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