4J7QA

Crystal structure of saccharomyces cerevisiae sfh3 complexed with phosphatidylinositol
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
330
structure length
322
Chain Sequence
KNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVYWPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
molecule keywords Phosphatidylinositol transfer protein PDR16
publication title Structural determinants for phosphatidylinositol recognition by Sfh3 and substrate-induced dimer-monomer transition during lipid transfer cycles.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 111
structure length 322
sequence length 330
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00650 CRAL_TRIO CRAL/TRIO domain
A PF03765 CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.525.10 Alpha Beta 3-Layer(aba) Sandwich Phosphatidylinositol Transfer Protein Sec14p CRAL-TRIO lipid binding domain 4j7qA00
1OLMA 1AUAA 3HX3A 1R5LA 4J7PA 4CIZA 3P7ZA 2E2XA 4J7QA 1O6UA 4OMKA 1OLME 4CJ6A 1OIZA 3B7QA 3B7NA 4OMJA 4M8ZA 4FMMA 2D4QA 3B74A 3W68A 3PEGA 3Q8GA 3B7ZA 4UYBA 3HY5A 4TLGA 3W67A 1OIPA 3PG7A
chains in the Genus database with same CATH superfamily
1OLMA 1AUAA 3HX3A 1R5LA 4J7PA 4CIZA 3P7ZA 2E2XA 4J7QA 1O6UA 4OMKA 1OLME 4CJ6A 1OIZA 3B7QA 3B7NA 4OMJA 4M8ZA 4FMMA 2D4QA 3B74A 3W68A 3PEGA 3Q8GA 3B7ZA 4UYBA 3HY5A 4TLGA 3W67A 1OIPA 3PG7A
chains in the Genus database with same CATH topology
1OLMA 1AUAA 3HX3A 1R5LA 4J7PA 4CIZA 3P7ZA 2E2XA 4J7QA 1O6UA 4OMKA 1OLME 4CJ6A 1OIZA 3B7QA 3B7NA 4OMJA 4M8ZA 4FMMA 2D4QA 3B74A 3W68A 3PEGA 3Q8GA 3B7ZA 4UYBA 3HY5A 4TLGA 3W67A 1OIPA 3PG7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OLM A;  1AUA A;  3HX3 A;  1R5L A;  4J7P A;  4CIZ A;  3P7Z A;  2E2X A;  4J7Q A;  1O6U A;  4OMK A;  1OLM E;  4CJ6 A;  1OIZ A;  3B7Q A;  3B7N A;  4OMJ A;  4M8Z A;  4FMM A;  2D4Q A;  3B74 A;  3W68 A;  3PEG A;  3Q8G A;  3B7Z A;  4UYB A;  3HY5 A;  4TLG A;  3W67 A;  1OIP A;  3PG7 A; 
#chains in the Genus database with same CATH topology
 1OLM A;  1AUA A;  3HX3 A;  1R5L A;  4J7P A;  4CIZ A;  3P7Z A;  2E2X A;  4J7Q A;  1O6U A;  4OMK A;  1OLM E;  4CJ6 A;  1OIZ A;  3B7Q A;  3B7N A;  4OMJ A;  4M8Z A;  4FMM A;  2D4Q A;  3B74 A;  3W68 A;  3PEG A;  3Q8G A;  3B7Z A;  4UYB A;  3HY5 A;  4TLG A;  3W67 A;  1OIP A;  3PG7 A; 
#chains in the Genus database with same CATH homology
 1OLM A;  1AUA A;  3HX3 A;  1R5L A;  4J7P A;  4CIZ A;  3P7Z A;  2E2X A;  4J7Q A;  1O6U A;  4OMK A;  1OLM E;  4CJ6 A;  1OIZ A;  3B7Q A;  3B7N A;  4OMJ A;  4M8Z A;  4FMM A;  2D4Q A;  3B74 A;  3W68 A;  3PEG A;  3Q8G A;  3B7Z A;  4UYB A;  3HY5 A;  4TLG A;  3W67 A;  1OIP A;  3PG7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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