4J93A

Crystal structure of the n-terminal domain of hiv-1 capsid in complex with inhibitor bi-1
Total Genus 50
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
146
structure length
146
Chain Sequence
b'PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Discovery of Novel Small-Molecule HIV-1 Replication Inhibitors That Stabilize Capsid Complexes.
pubmed doi rcsb
molecule keywords Gag protein
source organism Human immunodeficiency virus 1
molecule tags Viral protein/viral protein inhibitor
total genus 50
structure length 146
sequence length 146
ec nomenclature
pdb deposition date 2013-02-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 4j93A00
4WYMA 4XRQA 2X82A 4U0BA 4U0EA 5HGLA 3NTEA 4INBA 2PWOA 4B4NA 1L6NA 3H4EA 3H47A 4PH2A 1EIAA 2XGYA 4XFZA 4LQWC 2PXRC 4U0FA 3P05A 2LF4A 1M9DC 2X83A 2V4XA 4DGAC 1D1DA 4U0AA 4PH3A 4XFYA 2XGUA 1M9CC 4XFXA 1G03A 2PWMA 2XDEA 4E92A 2GOLB 4XROA 1GWPA 2KGFA 3BP9A 1P7NA 5HGOA 2XGVA 2WLVB 4DGEC 5JPAA 2GONA 2EIAA 2WLVA 1U7KA 1E6JP 2M8PA 4E91A 1QRJA 5HGMA 4HTWA 4U0CA 2JPRA 5HGKA 1EM9A 4NX4C 2Y4ZA 1AK4C 4U0DA 1M9XC 2M8NA 1AFVA 1M9YC 1M9EC 4PH0A 4QNBA 2M8LA 5HGNA 1M9FC 3MGEA 4J93A 2X2DD
chains in the Genus database with same CATH superfamily
4WYMA 4XRQA 2X82A 4U0BA 4U0EA 5HGLA 3NTEA 4INBA 2PWOA 4B4NA 1L6NA 3H4EA 3H47A 4PH2A 1EIAA 2XGYA 4XFZA 4LQWC 2PXRC 4U0FA 3P05A 2LF4A 1M9DC 2X83A 2V4XA 4DGAC 1D1DA 4U0AA 4PH3A 4XFYA 2XGUA 1M9CC 4XFXA 1G03A 2PWMA 2XDEA 4E92A 2GOLB 4XROA 1GWPA 2KGFA 3BP9A 1P7NA 5HGOA 2XGVA 2WLVB 4DGEC 5JPAA 2GONA 2EIAA 2WLVA 1U7KA 1E6JP 2M8PA 4E91A 1QRJA 5HGMA 4HTWA 4U0CA 2JPRA 5HGKA 1EM9A 4NX4C 2Y4ZA 1AK4C 4U0DA 1M9XC 2M8NA 1AFVA 1M9YC 1M9EC 4PH0A 4QNBA 2M8LA 5HGNA 1M9FC 3MGEA 4J93A 2X2DD
chains in the Genus database with same CATH topology
4WYMA 4XRQA 2X82A 4U0BA 4U0EA 5HGLA 3NTEA 4INBA 2PWOA 4B4NA 1L6NA 3H4EA 3H47A 4PH2A 1EIAA 2XGYA 4XFZA 4LQWC 2PXRC 4U0FA 3P05A 2LF4A 1M9DC 2X83A 2V4XA 4DGAC 1D1DA 4U0AA 4PH3A 4XFYA 2XGUA 1M9CC 4XFXA 1G03A 2PWMA 2XDEA 4E92A 2GOLB 4XROA 1GWPA 2KGFA 3BP9A 1P7NA 5HGOA 2XGVA 2WLVB 4DGEC 5JPAA 2GONA 2EIAA 2WLVA 1U7KA 1E6JP 2M8PA 4E91A 1QRJA 5HGMA 4HTWA 4U0CA 2JPRA 5HGKA 1EM9A 4NX4C 2Y4ZA 1AK4C 4U0DA 1M9XC 2M8NA 1AFVA 1M9YC 1M9EC 4PH0A 4QNBA 2M8LA 5HGNA 1M9FC 3MGEA 4J93A 2X2DD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WYM A;  4XRQ A;  2X82 A;  4U0B A;  4U0E A;  5HGL A;  3NTE A;  4INB A;  2PWO A;  4B4N A;  1L6N A;  3H4E A;  3H47 A;  4PH2 A;  1EIA A;  2XGY A;  4XFZ A;  4LQW C;  2PXR C;  4U0F A;  3P05 A;  2LF4 A;  1M9D C;  2X83 A;  2V4X A;  4DGA C;  1D1D A;  4U0A A;  4PH3 A;  4XFY A;  2XGU A;  1M9C C;  4XFX A;  1G03 A;  2PWM A;  2XDE A;  4E92 A;  2GOL B;  4XRO A;  1GWP A;  2KGF A;  3BP9 A;  1P7N A;  5HGO A;  2XGV A;  2WLV B;  4DGE C;  5JPA A;  2GON A;  2EIA A;  2WLV A;  1U7K A;  1E6J P;  2M8P A;  4E91 A;  1QRJ A;  5HGM A;  4HTW A;  4U0C A;  2JPR A;  5HGK A;  1EM9 A;  4NX4 C;  2Y4Z A;  1AK4 C;  4U0D A;  1M9X C;  2M8N A;  1AFV A;  1M9Y C;  1M9E C;  4PH0 A;  4QNB A;  2M8L A;  5HGN A;  1M9F C;  3MGE A;  4J93 A;  2X2D D; 
#chains in the Genus database with same CATH topology
 4WYM A;  4XRQ A;  2X82 A;  4U0B A;  4U0E A;  5HGL A;  3NTE A;  4INB A;  2PWO A;  4B4N A;  1L6N A;  3H4E A;  3H47 A;  4PH2 A;  1EIA A;  2XGY A;  4XFZ A;  4LQW C;  2PXR C;  4U0F A;  3P05 A;  2LF4 A;  1M9D C;  2X83 A;  2V4X A;  4DGA C;  1D1D A;  4U0A A;  4PH3 A;  4XFY A;  2XGU A;  1M9C C;  4XFX A;  1G03 A;  2PWM A;  2XDE A;  4E92 A;  2GOL B;  4XRO A;  1GWP A;  2KGF A;  3BP9 A;  1P7N A;  5HGO A;  2XGV A;  2WLV B;  4DGE C;  5JPA A;  2GON A;  2EIA A;  2WLV A;  1U7K A;  1E6J P;  2M8P A;  4E91 A;  1QRJ A;  5HGM A;  4HTW A;  4U0C A;  2JPR A;  5HGK A;  1EM9 A;  4NX4 C;  2Y4Z A;  1AK4 C;  4U0D A;  1M9X C;  2M8N A;  1AFV A;  1M9Y C;  1M9E C;  4PH0 A;  4QNB A;  2M8L A;  5HGN A;  1M9F C;  3MGE A;  4J93 A;  2X2D D; 
#chains in the Genus database with same CATH homology
 4WYM A;  4XRQ A;  2X82 A;  4U0B A;  4U0E A;  5HGL A;  3NTE A;  4INB A;  2PWO A;  4B4N A;  1L6N A;  3H4E A;  3H47 A;  4PH2 A;  1EIA A;  2XGY A;  4XFZ A;  4LQW C;  2PXR C;  4U0F A;  3P05 A;  2LF4 A;  1M9D C;  2X83 A;  2V4X A;  4DGA C;  1D1D A;  4U0A A;  4PH3 A;  4XFY A;  2XGU A;  1M9C C;  4XFX A;  1G03 A;  2PWM A;  2XDE A;  4E92 A;  2GOL B;  4XRO A;  1GWP A;  2KGF A;  3BP9 A;  1P7N A;  5HGO A;  2XGV A;  2WLV B;  4DGE C;  5JPA A;  2GON A;  2EIA A;  2WLV A;  1U7K A;  1E6J P;  2M8P A;  4E91 A;  1QRJ A;  5HGM A;  4HTW A;  4U0C A;  2JPR A;  5HGK A;  1EM9 A;  4NX4 C;  2Y4Z A;  1AK4 C;  4U0D A;  1M9X C;  2M8N A;  1AFV A;  1M9Y C;  1M9E C;  4PH0 A;  4QNB A;  2M8L A;  5HGN A;  1M9F C;  3MGE A;  4J93 A;  2X2D D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...