4J93A

Crystal structure of the n-terminal domain of hiv-1 capsid in complex with inhibitor bi-1
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
146
structure length
146
Chain Sequence
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/viral protein inhibitor
molecule keywords Gag protein
publication title Discovery of Novel Small-Molecule HIV-1 Replication Inhibitors That Stabilize Capsid Complexes.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
total genus 50
structure length 146
sequence length 146
ec nomenclature
pdb deposition date 2013-02-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 4j93A00
1AK4C 1AFVA 1QRJA 4QNBA 1M9CC 2XGVA 5JPAA 2PXRC 1P7NA 2KGFA 4U0AA 3H47A 2JPRA 5HGMA 4U0EA 1EIAA 4E92A 1M9DC 1M9FC 5HGNA 2XDEA 4DGEC 4XRQA 2XGYA 4B4NA 4HTWA 2EIAA 3BP9A 2WLVB 1D1DA 4J93A 2M8NA 2M8PA 4NX4C 1G03A 4LQWC 1E6JP 5HGKA 2PWOA 4XFXA 1U7KA 2X83A 1L6NA 3P05A 2Y4ZA 2X2DD 4U0BA 2X82A 2XGUA 3NTEA 4XFYA 4U0DA 5HGLA 1M9YC 3H4EA 2GOLB 4PH0A 4U0FA 2WLVA 1GWPA 2M8LA 4PH3A 2GONA 4XROA 1EM9A 2LF4A 2PWMA 3MGEA 1M9XC 2V4XA 5HGOA 4WYMA 4INBA 4PH2A 4E91A 4DGAC 1M9EC 4U0CA 4XFZA
chains in the Genus database with same CATH superfamily
1AK4C 1AFVA 1QRJA 4QNBA 1M9CC 2XGVA 5JPAA 2PXRC 1P7NA 2KGFA 4U0AA 3H47A 2JPRA 5HGMA 4U0EA 1EIAA 4E92A 1M9DC 1M9FC 5HGNA 2XDEA 4DGEC 4XRQA 2XGYA 4B4NA 4HTWA 2EIAA 3BP9A 2WLVB 1D1DA 4J93A 2M8NA 2M8PA 4NX4C 1G03A 4LQWC 1E6JP 5HGKA 2PWOA 4XFXA 1U7KA 2X83A 1L6NA 3P05A 2Y4ZA 2X2DD 4U0BA 2X82A 2XGUA 3NTEA 4XFYA 4U0DA 5HGLA 1M9YC 3H4EA 2GOLB 4PH0A 4U0FA 2WLVA 1GWPA 2M8LA 4PH3A 2GONA 4XROA 1EM9A 2LF4A 2PWMA 3MGEA 1M9XC 2V4XA 5HGOA 4WYMA 4INBA 4PH2A 4E91A 4DGAC 1M9EC 4U0CA 4XFZA
chains in the Genus database with same CATH topology
1AK4C 1AFVA 1QRJA 4QNBA 1M9CC 2XGVA 5JPAA 2PXRC 1P7NA 2KGFA 4U0AA 3H47A 2JPRA 5HGMA 4U0EA 1EIAA 4E92A 1M9DC 1M9FC 5HGNA 2XDEA 4DGEC 4XRQA 2XGYA 4B4NA 4HTWA 2EIAA 3BP9A 2WLVB 1D1DA 4J93A 2M8NA 2M8PA 4NX4C 1G03A 4LQWC 1E6JP 5HGKA 2PWOA 4XFXA 1U7KA 2X83A 1L6NA 3P05A 2Y4ZA 2X2DD 4U0BA 2X82A 2XGUA 3NTEA 4XFYA 4U0DA 5HGLA 1M9YC 3H4EA 2GOLB 4PH0A 4U0FA 2WLVA 1GWPA 2M8LA 4PH3A 2GONA 4XROA 1EM9A 2LF4A 2PWMA 3MGEA 1M9XC 2V4XA 5HGOA 4WYMA 4INBA 4PH2A 4E91A 4DGAC 1M9EC 4U0CA 4XFZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AK4 C;  1AFV A;  1QRJ A;  4QNB A;  1M9C C;  2XGV A;  5JPA A;  2PXR C;  1P7N A;  2KGF A;  4U0A A;  3H47 A;  2JPR A;  5HGM A;  4U0E A;  1EIA A;  4E92 A;  1M9D C;  1M9F C;  5HGN A;  2XDE A;  4DGE C;  4XRQ A;  2XGY A;  4B4N A;  4HTW A;  2EIA A;  3BP9 A;  2WLV B;  1D1D A;  4J93 A;  2M8N A;  2M8P A;  4NX4 C;  1G03 A;  4LQW C;  1E6J P;  5HGK A;  2PWO A;  4XFX A;  1U7K A;  2X83 A;  1L6N A;  3P05 A;  2Y4Z A;  2X2D D;  4U0B A;  2X82 A;  2XGU A;  3NTE A;  4XFY A;  4U0D A;  5HGL A;  1M9Y C;  3H4E A;  2GOL B;  4PH0 A;  4U0F A;  2WLV A;  1GWP A;  2M8L A;  4PH3 A;  2GON A;  4XRO A;  1EM9 A;  2LF4 A;  2PWM A;  3MGE A;  1M9X C;  2V4X A;  5HGO A;  4WYM A;  4INB A;  4PH2 A;  4E91 A;  4DGA C;  1M9E C;  4U0C A;  4XFZ A; 
#chains in the Genus database with same CATH topology
 1AK4 C;  1AFV A;  1QRJ A;  4QNB A;  1M9C C;  2XGV A;  5JPA A;  2PXR C;  1P7N A;  2KGF A;  4U0A A;  3H47 A;  2JPR A;  5HGM A;  4U0E A;  1EIA A;  4E92 A;  1M9D C;  1M9F C;  5HGN A;  2XDE A;  4DGE C;  4XRQ A;  2XGY A;  4B4N A;  4HTW A;  2EIA A;  3BP9 A;  2WLV B;  1D1D A;  4J93 A;  2M8N A;  2M8P A;  4NX4 C;  1G03 A;  4LQW C;  1E6J P;  5HGK A;  2PWO A;  4XFX A;  1U7K A;  2X83 A;  1L6N A;  3P05 A;  2Y4Z A;  2X2D D;  4U0B A;  2X82 A;  2XGU A;  3NTE A;  4XFY A;  4U0D A;  5HGL A;  1M9Y C;  3H4E A;  2GOL B;  4PH0 A;  4U0F A;  2WLV A;  1GWP A;  2M8L A;  4PH3 A;  2GON A;  4XRO A;  1EM9 A;  2LF4 A;  2PWM A;  3MGE A;  1M9X C;  2V4X A;  5HGO A;  4WYM A;  4INB A;  4PH2 A;  4E91 A;  4DGA C;  1M9E C;  4U0C A;  4XFZ A; 
#chains in the Genus database with same CATH homology
 1AK4 C;  1AFV A;  1QRJ A;  4QNB A;  1M9C C;  2XGV A;  5JPA A;  2PXR C;  1P7N A;  2KGF A;  4U0A A;  3H47 A;  2JPR A;  5HGM A;  4U0E A;  1EIA A;  4E92 A;  1M9D C;  1M9F C;  5HGN A;  2XDE A;  4DGE C;  4XRQ A;  2XGY A;  4B4N A;  4HTW A;  2EIA A;  3BP9 A;  2WLV B;  1D1D A;  4J93 A;  2M8N A;  2M8P A;  4NX4 C;  1G03 A;  4LQW C;  1E6J P;  5HGK A;  2PWO A;  4XFX A;  1U7K A;  2X83 A;  1L6N A;  3P05 A;  2Y4Z A;  2X2D D;  4U0B A;  2X82 A;  2XGU A;  3NTE A;  4XFY A;  4U0D A;  5HGL A;  1M9Y C;  3H4E A;  2GOL B;  4PH0 A;  4U0F A;  2WLV A;  1GWP A;  2M8L A;  4PH3 A;  2GON A;  4XRO A;  1EM9 A;  2LF4 A;  2PWM A;  3MGE A;  1M9X C;  2V4X A;  5HGO A;  4WYM A;  4INB A;  4PH2 A;  4E91 A;  4DGA C;  1M9E C;  4U0C A;  4XFZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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