4J93A

Crystal structure of the n-terminal domain of hiv-1 capsid in complex with inhibitor bi-1
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
146
structure length
146
Chain Sequence
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/viral protein inhibitor
source organism Human immunodeficiency virus 1
publication title Discovery of Novel Small-Molecule HIV-1 Replication Inhibitors That Stabilize Capsid Complexes.
pubmed doi rcsb
molecule keywords Gag protein
total genus 50
structure length 146
sequence length 146
ec nomenclature
pdb deposition date 2013-02-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 4j93A00
1U7KA 4E91A 4NX4C 1M9DC 4B4NA 5HGMA 1AK4C 4LQWC 1QRJA 4XFZA 1GWPA 5HGOA 2PWOA 2M8PA 5HGNA 4U0BA 4INBA 2LF4A 1M9CC 4XRQA 4DGAC 2X2DD 2XGYA 1L6NA 4U0DA 2WLVB 3H4EA 4QNBA 4PH0A 1D1DA 2M8NA 3MGEA 1AFVA 4U0FA 2GONA 3H47A 4DGEC 2V4XA 2Y4ZA 4HTWA 3NTEA 2KGFA 2GOLB 1M9FC 2X83A 4U0CA 5JPAA 2PWMA 4XFXA 5HGKA 1M9EC 4U0EA 4U0AA 1EM9A 1EIAA 4XFYA 2PXRC 1M9XC 2EIAA 4J93A 5HGLA 2WLVA 2XGUA 3BP9A 4PH2A 2X82A 1P7NA 2M8LA 2XGVA 2JPRA 4XROA 1M9YC 2XDEA 1G03A 3P05A 4WYMA 4PH3A 4E92A 1E6JP
chains in the Genus database with same CATH superfamily
1U7KA 4E91A 4NX4C 1M9DC 4B4NA 5HGMA 1AK4C 4LQWC 1QRJA 4XFZA 1GWPA 5HGOA 2PWOA 2M8PA 5HGNA 4U0BA 4INBA 2LF4A 1M9CC 4XRQA 4DGAC 2X2DD 2XGYA 1L6NA 4U0DA 2WLVB 3H4EA 4QNBA 4PH0A 1D1DA 2M8NA 3MGEA 1AFVA 4U0FA 2GONA 3H47A 4DGEC 2V4XA 2Y4ZA 4HTWA 3NTEA 2KGFA 2GOLB 1M9FC 2X83A 4U0CA 5JPAA 2PWMA 4XFXA 5HGKA 1M9EC 4U0EA 4U0AA 1EM9A 1EIAA 4XFYA 2PXRC 1M9XC 2EIAA 4J93A 5HGLA 2WLVA 2XGUA 3BP9A 4PH2A 2X82A 1P7NA 2M8LA 2XGVA 2JPRA 4XROA 1M9YC 2XDEA 1G03A 3P05A 4WYMA 4PH3A 4E92A 1E6JP
chains in the Genus database with same CATH topology
1U7KA 4E91A 4NX4C 1M9DC 4B4NA 5HGMA 1AK4C 4LQWC 1QRJA 4XFZA 1GWPA 5HGOA 2PWOA 2M8PA 5HGNA 4U0BA 4INBA 2LF4A 1M9CC 4XRQA 4DGAC 2X2DD 2XGYA 1L6NA 4U0DA 2WLVB 3H4EA 4QNBA 4PH0A 1D1DA 2M8NA 3MGEA 1AFVA 4U0FA 2GONA 3H47A 4DGEC 2V4XA 2Y4ZA 4HTWA 3NTEA 2KGFA 2GOLB 1M9FC 2X83A 4U0CA 5JPAA 2PWMA 4XFXA 5HGKA 1M9EC 4U0EA 4U0AA 1EM9A 1EIAA 4XFYA 2PXRC 1M9XC 2EIAA 4J93A 5HGLA 2WLVA 2XGUA 3BP9A 4PH2A 2X82A 1P7NA 2M8LA 2XGVA 2JPRA 4XROA 1M9YC 2XDEA 1G03A 3P05A 4WYMA 4PH3A 4E92A 1E6JP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U7K A;  4E91 A;  4NX4 C;  1M9D C;  4B4N A;  5HGM A;  1AK4 C;  4LQW C;  1QRJ A;  4XFZ A;  1GWP A;  5HGO A;  2PWO A;  2M8P A;  5HGN A;  4U0B A;  4INB A;  2LF4 A;  1M9C C;  4XRQ A;  4DGA C;  2X2D D;  2XGY A;  1L6N A;  4U0D A;  2WLV B;  3H4E A;  4QNB A;  4PH0 A;  1D1D A;  2M8N A;  3MGE A;  1AFV A;  4U0F A;  2GON A;  3H47 A;  4DGE C;  2V4X A;  2Y4Z A;  4HTW A;  3NTE A;  2KGF A;  2GOL B;  1M9F C;  2X83 A;  4U0C A;  5JPA A;  2PWM A;  4XFX A;  5HGK A;  1M9E C;  4U0E A;  4U0A A;  1EM9 A;  1EIA A;  4XFY A;  2PXR C;  1M9X C;  2EIA A;  4J93 A;  5HGL A;  2WLV A;  2XGU A;  3BP9 A;  4PH2 A;  2X82 A;  1P7N A;  2M8L A;  2XGV A;  2JPR A;  4XRO A;  1M9Y C;  2XDE A;  1G03 A;  3P05 A;  4WYM A;  4PH3 A;  4E92 A;  1E6J P; 
#chains in the Genus database with same CATH topology
 1U7K A;  4E91 A;  4NX4 C;  1M9D C;  4B4N A;  5HGM A;  1AK4 C;  4LQW C;  1QRJ A;  4XFZ A;  1GWP A;  5HGO A;  2PWO A;  2M8P A;  5HGN A;  4U0B A;  4INB A;  2LF4 A;  1M9C C;  4XRQ A;  4DGA C;  2X2D D;  2XGY A;  1L6N A;  4U0D A;  2WLV B;  3H4E A;  4QNB A;  4PH0 A;  1D1D A;  2M8N A;  3MGE A;  1AFV A;  4U0F A;  2GON A;  3H47 A;  4DGE C;  2V4X A;  2Y4Z A;  4HTW A;  3NTE A;  2KGF A;  2GOL B;  1M9F C;  2X83 A;  4U0C A;  5JPA A;  2PWM A;  4XFX A;  5HGK A;  1M9E C;  4U0E A;  4U0A A;  1EM9 A;  1EIA A;  4XFY A;  2PXR C;  1M9X C;  2EIA A;  4J93 A;  5HGL A;  2WLV A;  2XGU A;  3BP9 A;  4PH2 A;  2X82 A;  1P7N A;  2M8L A;  2XGV A;  2JPR A;  4XRO A;  1M9Y C;  2XDE A;  1G03 A;  3P05 A;  4WYM A;  4PH3 A;  4E92 A;  1E6J P; 
#chains in the Genus database with same CATH homology
 1U7K A;  4E91 A;  4NX4 C;  1M9D C;  4B4N A;  5HGM A;  1AK4 C;  4LQW C;  1QRJ A;  4XFZ A;  1GWP A;  5HGO A;  2PWO A;  2M8P A;  5HGN A;  4U0B A;  4INB A;  2LF4 A;  1M9C C;  4XRQ A;  4DGA C;  2X2D D;  2XGY A;  1L6N A;  4U0D A;  2WLV B;  3H4E A;  4QNB A;  4PH0 A;  1D1D A;  2M8N A;  3MGE A;  1AFV A;  4U0F A;  2GON A;  3H47 A;  4DGE C;  2V4X A;  2Y4Z A;  4HTW A;  3NTE A;  2KGF A;  2GOL B;  1M9F C;  2X83 A;  4U0C A;  5JPA A;  2PWM A;  4XFX A;  5HGK A;  1M9E C;  4U0E A;  4U0A A;  1EM9 A;  1EIA A;  4XFY A;  2PXR C;  1M9X C;  2EIA A;  4J93 A;  5HGL A;  2WLV A;  2XGU A;  3BP9 A;  4PH2 A;  2X82 A;  1P7N A;  2M8L A;  2XGV A;  2JPR A;  4XRO A;  1M9Y C;  2XDE A;  1G03 A;  3P05 A;  4WYM A;  4PH3 A;  4E92 A;  1E6J P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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