4J9WA

Crystal structure of the complex of a hydroxyproline epimerase (target efi-506499, pseudomonas fluorescens pf-5) with the inhibitor pyrrole-2-carboxylate
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
310
structure length
310
Chain Sequence
MKKITVIDSHTGGEPTRLVIDGFPDLGRGSMAERLQILEREHDQWRRACVLEPRGSDVLVGALLCQPQAGDACAGVIFFNNSGYLGMCGHGTIGLVRSLYHLGRIDQGVHRIETPVGTVEATLHEDLSVSVRNVPAYRYRTQVMLQLPGHGKVHGDIAWGGNWFFLISDHGQRIALDNVEALTHYTRDVRQALEAAGITGAEGGVIDHIELFADDPQADSRNFVLCPGKAYDRSPCGTGTSAKLACLAADGKLAPGQAWRQASVIGSQFSAHYEKVGEQLIPILRGSAHISAEATLLLDDSDPFVWGIGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the complex of a hydroxyproline epimerase (TARGET EFI-506499, PSEUDOMONAS FLUORESCENS PF-5) with the inhibitor pyrrole-2-carboxylate
rcsb
source organism Pseudomonas protegens
molecule tags Isomerase/isomerase inhibitor complex
molecule keywords Proline racemase family protein
total genus 86
structure length 310
sequence length 310
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4j9wA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4j9wA01
1U1WA 4IJZA 1W61A 1YM5A 4K8LA 1U0KA 4K7GB 2PW0A 4K7XA 3G7KA 4JBDA 1SDJA 2GKEA 1XUAA 2H9FA 3EJXA 4JUUA 1GQZA 2Q9JA 4Q60A 5H2YA 2GKJA 2Q9HA 4DUNA 1BWZA 4J9WA 3EDNA 5IWEA 1W62A 3EKMA 1T6KA 4IK0A 2AZPA 4LB0A 4Q2HA 1U1VA 1XUBA 2OTNA 2PVZA 4JD7A 5HA4A 4JCIA 3FVEA 5H2GA 1S7JA 1TM0A 1QY9A 5M47A 4J9XA 1QYAA 1U1XA
chains in the Genus database with same CATH superfamily
1YM5A 2PW0A 1SDJA 4OA3A 4GL6A 2Q9JA 3ICJA 2ZVFA 3PVHA 5H2YA 2GKJA 5IWEA 2IW4A 2OTNA 4JCIA 1U1XA 5ANPA 4IJZA 1W61A 1U0KA 3WQZA 4LG3A 4JUUA 2KW7A 2MPBA 3EDNA 4LS9A 3EKMA 4LB0A 2ZXRA 4RPAA 1I74A 5M47A 3G98A 2YMAA 2EB0A 2QB7A 2QB8A 1U1WA 1K23A 4K8LA 4K7GB 4K7XA 2GKEA 1XUAA 2H9FA 1GQZA 2ZXOA 4DUNA 1BWZA 4J9WA 1IR6A 1T6KA 1WPMA 2AZPA 2QB6A 1U1VA 1WPPA 4JD7A 2PVZA 5H2GA 2HAWA 1QY9A 1K20A 2ZXPA 3DEVA 3PW9A 3G7KA 4JBDA 3EJXA 4Q60A 2Q9HA 1W62A 3IGHX 4IK0A 3PTJA 3W5WA 4Q2HA 5HA4A 1XUBA 2LT2A 3FVEA 1S7JA 1TM0A 2ENXA 4PY9A 2KPTA 4J9XA 1QYAA
chains in the Genus database with same CATH topology
1YM5A 2PW0A 1SDJA 4OA3A 4GL6A 2Q9JA 3ICJA 2ZVFA 3PVHA 5H2YA 2GKJA 5IWEA 2IW4A 2OTNA 4JCIA 1U1XA 5ANPA 4IJZA 1W61A 1U0KA 3WQZA 4LG3A 4JUUA 2KW7A 2MPBA 3EDNA 4LS9A 3EKMA 4LB0A 2ZXRA 4RPAA 1I74A 5M47A 3G98A 2YMAA 2EB0A 2QB7A 2QB8A 1U1WA 1K23A 4K8LA 4K7GB 4K7XA 2GKEA 1XUAA 2H9FA 1GQZA 2ZXOA 4DUNA 1BWZA 4J9WA 1IR6A 1T6KA 1WPMA 2AZPA 2QB6A 1U1VA 1WPPA 4JD7A 2PVZA 5H2GA 2HAWA 1QY9A 1K20A 2ZXPA 3DEVA 3PW9A 3G7KA 4JBDA 3EJXA 4Q60A 2Q9HA 1W62A 3IGHX 4IK0A 3PTJA 3W5WA 4Q2HA 5HA4A 1XUBA 2LT2A 3FVEA 1S7JA 1TM0A 2ENXA 4PY9A 2KPTA 4J9XA 1QYAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U1W A;  4IJZ A;  1W61 A;  1YM5 A;  4K8L A;  1U0K A;  4K7G B;  2PW0 A;  4K7X A;  3G7K A;  4JBD A;  1SDJ A;  2GKE A;  1XUA A;  2H9F A;  3EJX A;  4JUU A;  1GQZ A;  2Q9J A;  4Q60 A;  5H2Y A;  2GKJ A;  2Q9H A;  4DUN A;  1BWZ A;  4J9W A;  3EDN A;  5IWE A;  1W62 A;  3EKM A;  1T6K A;  4IK0 A;  2AZP A;  4LB0 A;  4Q2H A;  1U1V A;  1XUB A;  2OTN A;  2PVZ A;  4JD7 A;  5HA4 A;  4JCI A;  3FVE A;  5H2G A;  1S7J A;  1TM0 A;  1QY9 A;  5M47 A;  4J9X A;  1QYA A;  1U1X A; 
#chains in the Genus database with same CATH topology
 1YM5 A;  2PW0 A;  1SDJ A;  4OA3 A;  4GL6 A;  2Q9J A;  3ICJ A;  2ZVF A;  3PVH A;  5H2Y A;  2GKJ A;  5IWE A;  2IW4 A;  2OTN A;  4JCI A;  1U1X A;  5ANP A;  4IJZ A;  1W61 A;  1U0K A;  3WQZ A;  4LG3 A;  4JUU A;  2KW7 A;  2MPB A;  3EDN A;  4LS9 A;  3EKM A;  4LB0 A;  2ZXR A;  4RPA A;  1I74 A;  5M47 A;  3G98 A;  2YMA A;  2EB0 A;  2QB7 A;  2QB8 A;  1U1W A;  1K23 A;  4K8L A;  4K7G B;  4K7X A;  2GKE A;  1XUA A;  2H9F A;  1GQZ A;  2ZXO A;  4DUN A;  1BWZ A;  4J9W A;  1IR6 A;  1T6K A;  1WPM A;  2AZP A;  2QB6 A;  1U1V A;  1WPP A;  4JD7 A;  2PVZ A;  5H2G A;  2HAW A;  1QY9 A;  1K20 A;  2ZXP A;  3DEV A;  3PW9 A;  3G7K A;  4JBD A;  3EJX A;  4Q60 A;  2Q9H A;  1W62 A;  3IGH X;  4IK0 A;  3PTJ A;  3W5W A;  4Q2H A;  5HA4 A;  1XUB A;  2LT2 A;  3FVE A;  1S7J A;  1TM0 A;  2ENX A;  4PY9 A;  2KPT A;  4J9X A;  1QYA A; 
#chains in the Genus database with same CATH homology
 1YM5 A;  2PW0 A;  1SDJ A;  4OA3 A;  4GL6 A;  2Q9J A;  3ICJ A;  2ZVF A;  3PVH A;  5H2Y A;  2GKJ A;  5IWE A;  2IW4 A;  2OTN A;  4JCI A;  1U1X A;  5ANP A;  4IJZ A;  1W61 A;  1U0K A;  3WQZ A;  4LG3 A;  4JUU A;  2KW7 A;  2MPB A;  3EDN A;  4LS9 A;  3EKM A;  4LB0 A;  2ZXR A;  4RPA A;  1I74 A;  5M47 A;  3G98 A;  2YMA A;  2EB0 A;  2QB7 A;  2QB8 A;  1U1W A;  1K23 A;  4K8L A;  4K7G B;  4K7X A;  2GKE A;  1XUA A;  2H9F A;  1GQZ A;  2ZXO A;  4DUN A;  1BWZ A;  4J9W A;  1IR6 A;  1T6K A;  1WPM A;  2AZP A;  2QB6 A;  1U1V A;  1WPP A;  4JD7 A;  2PVZ A;  5H2G A;  2HAW A;  1QY9 A;  1K20 A;  2ZXP A;  3DEV A;  3PW9 A;  3G7K A;  4JBD A;  3EJX A;  4Q60 A;  2Q9H A;  1W62 A;  3IGH X;  4IK0 A;  3PTJ A;  3W5W A;  4Q2H A;  5HA4 A;  1XUB A;  2LT2 A;  3FVE A;  1S7J A;  1TM0 A;  2ENX A;  4PY9 A;  2KPT A;  4J9X A;  1QYA A; 
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